Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11020 and EX31_RS11025 are separated by 448 nucleotides EX31_RS11025 and EX31_RS11030 overlap by 4 nucleotides
EX31_RS11020: EX31_RS11020 - SDR family oxidoreductase, at 132,944 to 133,684
_RS11020
EX31_RS11025: EX31_RS11025 - efflux RND transporter permease subunit, at 134,133 to 137,222
_RS11025
EX31_RS11030: EX31_RS11030 - efflux RND transporter periplasmic adaptor subunit, at 137,219 to 138,328
_RS11030
Position (kb) 134
135
136
137
138 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 133.206 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.242 kb on - strand, within EX31_RS11020 at 133.242 kb on - strand, within EX31_RS11020 at 133.242 kb on - strand, within EX31_RS11020 at 133.242 kb on - strand, within EX31_RS11020 at 133.266 kb on + strand, within EX31_RS11020 at 133.342 kb on + strand, within EX31_RS11020 at 133.343 kb on - strand, within EX31_RS11020 at 133.343 kb on - strand, within EX31_RS11020 at 133.343 kb on - strand, within EX31_RS11020 at 133.653 kb on - strand at 133.654 kb on + strand at 133.654 kb on + strand at 133.654 kb on + strand at 133.654 kb on + strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.655 kb on - strand at 133.658 kb on + strand at 133.659 kb on - strand at 133.698 kb on + strand at 133.699 kb on - strand at 133.706 kb on - strand at 133.707 kb on + strand at 133.707 kb on + strand at 133.708 kb on - strand at 133.708 kb on - strand at 133.708 kb on - strand at 133.719 kb on - strand at 133.719 kb on - strand at 133.719 kb on - strand at 133.771 kb on - strand at 133.780 kb on + strand at 133.781 kb on - strand at 133.794 kb on + strand at 133.795 kb on - strand at 133.795 kb on - strand at 133.795 kb on - strand at 133.795 kb on - strand at 133.865 kb on + strand at 133.865 kb on + strand at 133.865 kb on + strand at 133.866 kb on - strand at 133.866 kb on - strand at 133.866 kb on - strand at 134.135 kb on - strand at 134.135 kb on - strand at 134.135 kb on - strand at 134.135 kb on - strand at 134.139 kb on + strand at 134.140 kb on - strand at 134.197 kb on + strand at 134.197 kb on + strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.198 kb on - strand at 134.258 kb on + strand at 134.258 kb on + strand at 134.259 kb on - strand at 134.259 kb on - strand at 134.261 kb on - strand at 134.261 kb on - strand at 134.419 kb on - strand at 134.592 kb on - strand, within EX31_RS11025 at 134.592 kb on - strand, within EX31_RS11025 at 134.670 kb on - strand, within EX31_RS11025 at 134.709 kb on - strand, within EX31_RS11025 at 134.973 kb on - strand, within EX31_RS11025 at 135.186 kb on - strand, within EX31_RS11025 at 135.212 kb on - strand, within EX31_RS11025 at 135.232 kb on + strand, within EX31_RS11025 at 135.425 kb on + strand, within EX31_RS11025 at 135.427 kb on + strand, within EX31_RS11025 at 135.427 kb on + strand, within EX31_RS11025 at 135.428 kb on - strand, within EX31_RS11025 at 135.506 kb on + strand, within EX31_RS11025 at 135.540 kb on + strand, within EX31_RS11025 at 135.541 kb on - strand, within EX31_RS11025 at 135.597 kb on + strand, within EX31_RS11025 at 135.597 kb on + strand, within EX31_RS11025 at 135.597 kb on + strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.598 kb on - strand, within EX31_RS11025 at 135.600 kb on - strand, within EX31_RS11025 at 135.600 kb on - strand, within EX31_RS11025 at 135.600 kb on - strand, within EX31_RS11025 at 135.600 kb on - strand, within EX31_RS11025 at 135.608 kb on + strand, within EX31_RS11025 at 135.636 kb on + strand, within EX31_RS11025 at 135.685 kb on + strand, within EX31_RS11025 at 135.686 kb on - strand, within EX31_RS11025 at 135.686 kb on - strand, within EX31_RS11025 at 135.686 kb on - strand, within EX31_RS11025 at 135.761 kb on - strand, within EX31_RS11025 at 135.761 kb on - strand, within EX31_RS11025 at 135.768 kb on - strand, within EX31_RS11025 at 135.836 kb on - strand, within EX31_RS11025 at 135.836 kb on - strand, within EX31_RS11025 at 135.836 kb on - strand, within EX31_RS11025 at 135.959 kb on - strand, within EX31_RS11025 at 136.053 kb on - strand, within EX31_RS11025 at 136.349 kb on + strand, within EX31_RS11025 at 136.464 kb on + strand, within EX31_RS11025 at 136.465 kb on - strand, within EX31_RS11025 at 136.465 kb on - strand, within EX31_RS11025 at 136.465 kb on - strand, within EX31_RS11025 at 136.465 kb on - strand, within EX31_RS11025 at 136.871 kb on + strand, within EX31_RS11025 at 136.871 kb on + strand, within EX31_RS11025 at 136.872 kb on - strand, within EX31_RS11025 at 136.872 kb on - strand, within EX31_RS11025 at 136.872 kb on - strand, within EX31_RS11025 at 136.872 kb on - strand, within EX31_RS11025 at 136.937 kb on + strand at 136.937 kb on + strand at 136.937 kb on + strand at 136.960 kb on + strand at 136.960 kb on + strand at 136.961 kb on - strand at 136.978 kb on + strand at 136.979 kb on - strand at 136.997 kb on + strand at 136.998 kb on - strand at 137.066 kb on + strand at 137.066 kb on + strand at 137.067 kb on - strand at 137.067 kb on - strand at 137.067 kb on - strand at 137.268 kb on - strand at 137.445 kb on + strand, within EX31_RS11030 at 137.445 kb on + strand, within EX31_RS11030 at 137.446 kb on - strand, within EX31_RS11030 at 137.446 kb on - strand, within EX31_RS11030 at 137.446 kb on - strand, within EX31_RS11030 at 137.489 kb on - strand, within EX31_RS11030 at 137.552 kb on + strand, within EX31_RS11030 at 137.552 kb on + strand, within EX31_RS11030 at 137.552 kb on + strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.553 kb on - strand, within EX31_RS11030 at 137.556 kb on + strand, within EX31_RS11030 at 137.556 kb on + strand, within EX31_RS11030 at 137.556 kb on + strand, within EX31_RS11030 at 137.556 kb on + strand, within EX31_RS11030 at 137.556 kb on + strand, within EX31_RS11030 at 137.556 kb on + strand, within EX31_RS11030 at 137.556 kb on + strand, within EX31_RS11030 at 137.556 kb on + strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.557 kb on - strand, within EX31_RS11030 at 137.632 kb on + strand, within EX31_RS11030 at 137.633 kb on - strand, within EX31_RS11030 at 137.643 kb on + strand, within EX31_RS11030 at 137.643 kb on + strand, within EX31_RS11030 at 137.643 kb on + strand, within EX31_RS11030 at 137.643 kb on + strand, within EX31_RS11030 at 137.644 kb on - strand, within EX31_RS11030 at 137.644 kb on - strand, within EX31_RS11030 at 137.644 kb on - strand, within EX31_RS11030 at 137.644 kb on - strand, within EX31_RS11030 at 137.644 kb on - strand, within EX31_RS11030 at 137.914 kb on - strand, within EX31_RS11030 at 138.173 kb on - strand, within EX31_RS11030
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 133,206 - EX31_RS11020 0.35 -0.8 133,240 - EX31_RS11020 0.40 +0.2 133,240 - EX31_RS11020 0.40 +0.2 133,240 - EX31_RS11020 0.40 +0.2 133,240 - EX31_RS11020 0.40 +0.6 133,240 - EX31_RS11020 0.40 -2.2 133,241 + EX31_RS11020 0.40 +1.2 133,241 + EX31_RS11020 0.40 -0.8 133,241 + EX31_RS11020 0.40 +0.2 133,241 + EX31_RS11020 0.40 +4.0 133,241 + EX31_RS11020 0.40 -1.8 133,242 - EX31_RS11020 0.40 +0.5 133,242 - EX31_RS11020 0.40 -1.4 133,242 - EX31_RS11020 0.40 +1.2 133,242 - EX31_RS11020 0.40 -1.4 133,266 + EX31_RS11020 0.43 +0.2 133,342 + EX31_RS11020 0.54 +0.5 133,343 - EX31_RS11020 0.54 -2.8 133,343 - EX31_RS11020 0.54 +1.3 133,343 - EX31_RS11020 0.54 +2.4 133,653 - +0.5 133,654 + -0.4 133,654 + +2.0 133,654 + -2.0 133,654 + +2.7 133,655 - -2.5 133,655 - -0.8 133,655 - +0.9 133,655 - +0.3 133,655 - +2.5 133,655 - +0.8 133,655 - +1.4 133,655 - -0.8 133,655 - -1.7 133,655 - -0.4 133,655 - +1.6 133,655 - +0.2 133,658 + +0.2 133,659 - -2.7 133,698 + -1.7 133,699 - -0.8 133,706 - +1.0 133,707 + +0.2 133,707 + +1.2 133,708 - +1.2 133,708 - +1.0 133,708 - +0.2 133,719 - -1.3 133,719 - -1.5 133,719 - -2.8 133,771 - +2.9 133,780 + -1.4 133,781 - +1.4 133,794 + +0.4 133,795 - -1.4 133,795 - +1.2 133,795 - +1.2 133,795 - -1.2 133,865 + +1.2 133,865 + +1.2 133,865 + +0.6 133,866 - -0.2 133,866 - +4.2 133,866 - +1.0 134,135 - -1.8 134,135 - +1.3 134,135 - -2.2 134,135 - -2.3 134,139 + +0.2 134,140 - -0.8 134,197 + -2.0 134,197 + -1.2 134,198 - +1.9 134,198 - +0.2 134,198 - +4.0 134,198 - +1.4 134,198 - +1.5 134,198 - +0.0 134,198 - +2.7 134,198 - +2.2 134,198 - +2.9 134,198 - +0.2 134,198 - -1.7 134,258 + +3.7 134,258 + +0.3 134,259 - -1.7 134,259 - +1.8 134,261 - +0.2 134,261 - +0.2 134,419 - -1.8 134,592 - EX31_RS11025 0.15 -1.2 134,592 - EX31_RS11025 0.15 -2.0 134,670 - EX31_RS11025 0.17 -0.8 134,709 - EX31_RS11025 0.19 +0.2 134,973 - EX31_RS11025 0.27 +3.0 135,186 - EX31_RS11025 0.34 -1.4 135,212 - EX31_RS11025 0.35 -2.0 135,232 + EX31_RS11025 0.36 -1.4 135,425 + EX31_RS11025 0.42 -0.8 135,427 + EX31_RS11025 0.42 +1.0 135,427 + EX31_RS11025 0.42 -0.8 135,428 - EX31_RS11025 0.42 -0.3 135,506 + EX31_RS11025 0.44 +2.9 135,540 + EX31_RS11025 0.46 -0.8 135,541 - EX31_RS11025 0.46 +2.7 135,597 + EX31_RS11025 0.47 -1.4 135,597 + EX31_RS11025 0.47 -0.4 135,597 + EX31_RS11025 0.47 +2.2 135,598 - EX31_RS11025 0.47 -1.4 135,598 - EX31_RS11025 0.47 +0.3 135,598 - EX31_RS11025 0.47 +1.3 135,598 - EX31_RS11025 0.47 -0.4 135,598 - EX31_RS11025 0.47 +1.7 135,598 - EX31_RS11025 0.47 +1.6 135,598 - EX31_RS11025 0.47 -0.4 135,598 - EX31_RS11025 0.47 +1.8 135,598 - EX31_RS11025 0.47 -1.2 135,598 - EX31_RS11025 0.47 -0.4 135,598 - EX31_RS11025 0.47 -2.3 135,598 - EX31_RS11025 0.47 -2.8 135,600 - EX31_RS11025 0.47 +1.9 135,600 - EX31_RS11025 0.47 +1.2 135,600 - EX31_RS11025 0.47 +0.2 135,600 - EX31_RS11025 0.47 -1.8 135,608 + EX31_RS11025 0.48 +0.4 135,636 + EX31_RS11025 0.49 +0.2 135,685 + EX31_RS11025 0.50 -1.4 135,686 - EX31_RS11025 0.50 -0.1 135,686 - EX31_RS11025 0.50 -2.3 135,686 - EX31_RS11025 0.50 +0.2 135,761 - EX31_RS11025 0.53 +3.2 135,761 - EX31_RS11025 0.53 +2.2 135,768 - EX31_RS11025 0.53 -2.0 135,836 - EX31_RS11025 0.55 +1.2 135,836 - EX31_RS11025 0.55 +1.2 135,836 - EX31_RS11025 0.55 +0.1 135,959 - EX31_RS11025 0.59 -2.9 136,053 - EX31_RS11025 0.62 -1.2 136,349 + EX31_RS11025 0.72 +0.9 136,464 + EX31_RS11025 0.75 -1.4 136,465 - EX31_RS11025 0.75 +1.3 136,465 - EX31_RS11025 0.75 +1.7 136,465 - EX31_RS11025 0.75 -0.8 136,465 - EX31_RS11025 0.75 +0.1 136,871 + EX31_RS11025 0.89 +1.7 136,871 + EX31_RS11025 0.89 -1.2 136,872 - EX31_RS11025 0.89 +0.7 136,872 - EX31_RS11025 0.89 -2.3 136,872 - EX31_RS11025 0.89 +0.2 136,872 - EX31_RS11025 0.89 -0.4 136,937 + +1.2 136,937 + +3.1 136,937 + -1.4 136,960 + +2.2 136,960 + -2.0 136,961 - +0.6 136,978 + +0.2 136,979 - +1.2 136,997 + -0.8 136,998 - -0.4 137,066 + +1.0 137,066 + +2.8 137,067 - -1.8 137,067 - +4.6 137,067 - +0.2 137,268 - -2.2 137,445 + EX31_RS11030 0.20 +1.5 137,445 + EX31_RS11030 0.20 +0.2 137,446 - EX31_RS11030 0.20 -0.8 137,446 - EX31_RS11030 0.20 -0.8 137,446 - EX31_RS11030 0.20 -2.0 137,489 - EX31_RS11030 0.24 -2.4 137,552 + EX31_RS11030 0.30 +3.4 137,552 + EX31_RS11030 0.30 -1.2 137,552 + EX31_RS11030 0.30 -0.4 137,553 - EX31_RS11030 0.30 -2.0 137,553 - EX31_RS11030 0.30 +1.7 137,553 - EX31_RS11030 0.30 +1.0 137,553 - EX31_RS11030 0.30 -2.2 137,553 - EX31_RS11030 0.30 -0.7 137,553 - EX31_RS11030 0.30 +1.6 137,553 - EX31_RS11030 0.30 +0.2 137,553 - EX31_RS11030 0.30 +0.2 137,553 - EX31_RS11030 0.30 -2.3 137,553 - EX31_RS11030 0.30 +1.8 137,553 - EX31_RS11030 0.30 +0.8 137,553 - EX31_RS11030 0.30 +0.3 137,553 - EX31_RS11030 0.30 +0.1 137,553 - EX31_RS11030 0.30 +1.2 137,556 + EX31_RS11030 0.30 -2.0 137,556 + EX31_RS11030 0.30 -2.9 137,556 + EX31_RS11030 0.30 +0.3 137,556 + EX31_RS11030 0.30 +1.4 137,556 + EX31_RS11030 0.30 +1.2 137,556 + EX31_RS11030 0.30 +0.5 137,556 + EX31_RS11030 0.30 +1.2 137,556 + EX31_RS11030 0.30 +0.6 137,557 - EX31_RS11030 0.30 -2.0 137,557 - EX31_RS11030 0.30 +0.2 137,557 - EX31_RS11030 0.30 -0.4 137,557 - EX31_RS11030 0.30 -0.8 137,557 - EX31_RS11030 0.30 -2.3 137,557 - EX31_RS11030 0.30 +2.4 137,557 - EX31_RS11030 0.30 +1.2 137,557 - EX31_RS11030 0.30 -3.8 137,557 - EX31_RS11030 0.30 +0.7 137,557 - EX31_RS11030 0.30 -3.2 137,557 - EX31_RS11030 0.30 +0.2 137,557 - EX31_RS11030 0.30 -0.4 137,557 - EX31_RS11030 0.30 +1.9 137,557 - EX31_RS11030 0.30 -2.2 137,632 + EX31_RS11030 0.37 +1.5 137,633 - EX31_RS11030 0.37 -0.8 137,643 + EX31_RS11030 0.38 +0.2 137,643 + EX31_RS11030 0.38 +2.2 137,643 + EX31_RS11030 0.38 -0.4 137,643 + EX31_RS11030 0.38 -0.8 137,644 - EX31_RS11030 0.38 -1.4 137,644 - EX31_RS11030 0.38 -2.7 137,644 - EX31_RS11030 0.38 +2.6 137,644 - EX31_RS11030 0.38 -0.4 137,644 - EX31_RS11030 0.38 -2.5 137,914 - EX31_RS11030 0.63 -0.8 138,173 - EX31_RS11030 0.86 -0.8
Or see this region's nucleotide sequence