Strain Fitness in Rahnella sp. WP5 around EX31_RS10990

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10985 and EX31_RS10990 are separated by 35 nucleotidesEX31_RS10990 and EX31_RS10995 are separated by 145 nucleotidesEX31_RS10995 and EX31_RS11000 are separated by 84 nucleotides EX31_RS10985: EX31_RS10985 - phosphoethanolamine--lipid A transferase, at 125,001 to 126,635 _RS10985 EX31_RS10990: EX31_RS10990 - LysR family transcriptional regulator, at 126,671 to 127,567 _RS10990 EX31_RS10995: EX31_RS10995 - phenolic acid decarboxylase, at 127,713 to 128,219 _RS10995 EX31_RS11000: EX31_RS11000 - alpha/beta hydrolase, at 128,304 to 129,317 _RS11000 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 125.754 kb on + strand, within EX31_RS10985at 125.775 kb on + strand, within EX31_RS10985at 125.776 kb on - strand, within EX31_RS10985at 125.934 kb on - strand, within EX31_RS10985at 126.032 kb on + strand, within EX31_RS10985at 126.036 kb on + strand, within EX31_RS10985at 126.156 kb on + strand, within EX31_RS10985at 126.192 kb on - strand, within EX31_RS10985at 126.192 kb on - strand, within EX31_RS10985at 126.249 kb on - strand, within EX31_RS10985at 126.257 kb on + strand, within EX31_RS10985at 126.260 kb on + strand, within EX31_RS10985at 126.261 kb on - strand, within EX31_RS10985at 126.261 kb on - strand, within EX31_RS10985at 126.279 kb on + strand, within EX31_RS10985at 126.323 kb on + strand, within EX31_RS10985at 126.327 kb on + strand, within EX31_RS10985at 126.327 kb on + strand, within EX31_RS10985at 126.387 kb on + strand, within EX31_RS10985at 126.387 kb on + strand, within EX31_RS10985at 126.388 kb on - strand, within EX31_RS10985at 126.388 kb on - strand, within EX31_RS10985at 126.465 kb on + strand, within EX31_RS10985at 126.621 kb on - strandat 126.633 kb on + strandat 126.633 kb on + strandat 126.633 kb on + strandat 126.634 kb on - strandat 126.760 kb on + strandat 126.760 kb on + strandat 126.761 kb on - strand, within EX31_RS10990at 126.761 kb on - strand, within EX31_RS10990at 126.761 kb on - strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.762 kb on + strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.763 kb on - strand, within EX31_RS10990at 126.976 kb on + strand, within EX31_RS10990at 126.977 kb on - strand, within EX31_RS10990at 127.092 kb on - strand, within EX31_RS10990at 127.122 kb on + strand, within EX31_RS10990at 127.122 kb on + strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.123 kb on - strand, within EX31_RS10990at 127.124 kb on + strand, within EX31_RS10990at 127.124 kb on + strand, within EX31_RS10990at 127.125 kb on - strand, within EX31_RS10990at 127.125 kb on - strand, within EX31_RS10990at 127.125 kb on - strand, within EX31_RS10990at 127.145 kb on + strand, within EX31_RS10990at 127.146 kb on - strand, within EX31_RS10990at 127.146 kb on - strand, within EX31_RS10990at 127.146 kb on - strand, within EX31_RS10990at 127.242 kb on + strand, within EX31_RS10990at 127.437 kb on - strand, within EX31_RS10990at 127.437 kb on - strand, within EX31_RS10990at 127.453 kb on - strand, within EX31_RS10990at 127.526 kb on + strandat 127.526 kb on + strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.582 kb on + strandat 127.583 kb on - strandat 127.583 kb on - strandat 127.583 kb on - strandat 127.655 kb on - strandat 127.710 kb on - strandat 127.710 kb on - strandat 127.710 kb on - strandat 127.710 kb on - strandat 127.710 kb on - strandat 127.767 kb on + strand, within EX31_RS10995at 127.767 kb on + strand, within EX31_RS10995at 127.767 kb on + strand, within EX31_RS10995at 127.768 kb on - strand, within EX31_RS10995at 127.768 kb on - strand, within EX31_RS10995at 127.768 kb on - strand, within EX31_RS10995at 127.792 kb on - strand, within EX31_RS10995at 127.800 kb on + strand, within EX31_RS10995at 127.801 kb on - strand, within EX31_RS10995at 127.801 kb on - strand, within EX31_RS10995at 127.881 kb on + strand, within EX31_RS10995at 127.881 kb on + strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.882 kb on - strand, within EX31_RS10995at 127.884 kb on - strand, within EX31_RS10995at 128.051 kb on + strand, within EX31_RS10995at 128.051 kb on + strand, within EX31_RS10995at 128.052 kb on - strand, within EX31_RS10995at 128.126 kb on + strand, within EX31_RS10995at 128.195 kb on + strandat 128.237 kb on + strandat 128.238 kb on - strandat 128.382 kb on - strandat 128.409 kb on - strand, within EX31_RS11000at 128.409 kb on - strand, within EX31_RS11000at 128.440 kb on + strand, within EX31_RS11000at 128.441 kb on - strand, within EX31_RS11000at 128.441 kb on - strand, within EX31_RS11000at 128.461 kb on - strand, within EX31_RS11000at 128.461 kb on - strand, within EX31_RS11000at 128.529 kb on + strand, within EX31_RS11000at 128.552 kb on - strand, within EX31_RS11000

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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125,754 + EX31_RS10985 0.46 +1.2
125,775 + EX31_RS10985 0.47 +1.2
125,776 - EX31_RS10985 0.47 -2.0
125,934 - EX31_RS10985 0.57 +1.6
126,032 + EX31_RS10985 0.63 -2.5
126,036 + EX31_RS10985 0.63 -2.8
126,156 + EX31_RS10985 0.71 -2.5
126,192 - EX31_RS10985 0.73 -2.0
126,192 - EX31_RS10985 0.73 -0.8
126,249 - EX31_RS10985 0.76 +2.0
126,257 + EX31_RS10985 0.77 -0.8
126,260 + EX31_RS10985 0.77 +1.2
126,261 - EX31_RS10985 0.77 +2.5
126,261 - EX31_RS10985 0.77 +1.4
126,279 + EX31_RS10985 0.78 +1.4
126,323 + EX31_RS10985 0.81 +1.7
126,327 + EX31_RS10985 0.81 +1.5
126,327 + EX31_RS10985 0.81 +0.2
126,387 + EX31_RS10985 0.85 +1.2
126,387 + EX31_RS10985 0.85 +1.2
126,388 - EX31_RS10985 0.85 -1.4
126,388 - EX31_RS10985 0.85 +0.2
126,465 + EX31_RS10985 0.90 +1.0
126,621 - +2.0
126,633 + -1.4
126,633 + -2.1
126,633 + +1.9
126,634 - -1.2
126,760 + +0.2
126,760 + -1.2
126,761 - EX31_RS10990 0.10 -0.4
126,761 - EX31_RS10990 0.10 -2.4
126,761 - EX31_RS10990 0.10 +1.2
126,762 + EX31_RS10990 0.10 -0.8
126,762 + EX31_RS10990 0.10 +1.0
126,762 + EX31_RS10990 0.10 -1.4
126,762 + EX31_RS10990 0.10 +1.4
126,762 + EX31_RS10990 0.10 +0.2
126,762 + EX31_RS10990 0.10 +0.2
126,762 + EX31_RS10990 0.10 -2.0
126,763 - EX31_RS10990 0.10 -1.2
126,763 - EX31_RS10990 0.10 +1.2
126,763 - EX31_RS10990 0.10 +2.5
126,763 - EX31_RS10990 0.10 +1.0
126,763 - EX31_RS10990 0.10 -3.2
126,763 - EX31_RS10990 0.10 +1.2
126,976 + EX31_RS10990 0.34 +1.3
126,977 - EX31_RS10990 0.34 -0.2
127,092 - EX31_RS10990 0.47 -1.4
127,122 + EX31_RS10990 0.50 -1.2
127,122 + EX31_RS10990 0.50 -1.7
127,123 - EX31_RS10990 0.50 -0.4
127,123 - EX31_RS10990 0.50 +0.2
127,123 - EX31_RS10990 0.50 -2.3
127,123 - EX31_RS10990 0.50 -1.4
127,123 - EX31_RS10990 0.50 +2.2
127,123 - EX31_RS10990 0.50 +0.7
127,124 + EX31_RS10990 0.51 -2.2
127,124 + EX31_RS10990 0.51 +0.7
127,125 - EX31_RS10990 0.51 -2.0
127,125 - EX31_RS10990 0.51 -1.0
127,125 - EX31_RS10990 0.51 -1.9
127,145 + EX31_RS10990 0.53 -1.0
127,146 - EX31_RS10990 0.53 +2.4
127,146 - EX31_RS10990 0.53 +0.3
127,146 - EX31_RS10990 0.53 -1.2
127,242 + EX31_RS10990 0.64 +0.2
127,437 - EX31_RS10990 0.85 +0.2
127,437 - EX31_RS10990 0.85 -0.4
127,453 - EX31_RS10990 0.87 +1.2
127,526 + +1.5
127,526 + +0.2
127,527 - +1.2
127,527 - -0.4
127,582 + +1.2
127,583 - +2.2
127,583 - -0.8
127,583 - -1.4
127,655 - +1.7
127,710 - -0.8
127,710 - +0.4
127,710 - -2.0
127,710 - +1.4
127,710 - -1.2
127,767 + EX31_RS10995 0.11 +0.3
127,767 + EX31_RS10995 0.11 +0.0
127,767 + EX31_RS10995 0.11 +1.5
127,768 - EX31_RS10995 0.11 -2.8
127,768 - EX31_RS10995 0.11 +1.2
127,768 - EX31_RS10995 0.11 +2.5
127,792 - EX31_RS10995 0.16 +3.1
127,800 + EX31_RS10995 0.17 -1.4
127,801 - EX31_RS10995 0.17 +1.5
127,801 - EX31_RS10995 0.17 +0.2
127,881 + EX31_RS10995 0.33 +0.2
127,881 + EX31_RS10995 0.33 +1.2
127,882 - EX31_RS10995 0.33 -1.8
127,882 - EX31_RS10995 0.33 -1.8
127,882 - EX31_RS10995 0.33 -1.4
127,882 - EX31_RS10995 0.33 -0.8
127,882 - EX31_RS10995 0.33 +1.2
127,882 - EX31_RS10995 0.33 +1.2
127,884 - EX31_RS10995 0.34 +1.5
128,051 + EX31_RS10995 0.67 -1.2
128,051 + EX31_RS10995 0.67 +1.3
128,052 - EX31_RS10995 0.67 +1.2
128,126 + EX31_RS10995 0.81 +1.2
128,195 + +0.2
128,237 + +0.3
128,238 - -0.4
128,382 - +0.9
128,409 - EX31_RS11000 0.10 +1.2
128,409 - EX31_RS11000 0.10 +1.2
128,440 + EX31_RS11000 0.13 -0.2
128,441 - EX31_RS11000 0.14 +1.3
128,441 - EX31_RS11000 0.14 +1.7
128,461 - EX31_RS11000 0.15 +2.7
128,461 - EX31_RS11000 0.15 +1.2
128,529 + EX31_RS11000 0.22 -2.0
128,552 - EX31_RS11000 0.24 -2.4

Or see this region's nucleotide sequence