Strain Fitness in Rahnella sp. WP5 around EX31_RS10710

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10705 and EX31_RS10710 are separated by 49 nucleotidesEX31_RS10710 and EX31_RS10715 overlap by 4 nucleotidesEX31_RS10715 and EX31_RS10720 are separated by 216 nucleotides EX31_RS10705: EX31_RS10705 - adhesin, at 58,080 to 59,216 _RS10705 EX31_RS10710: EX31_RS10710 - hypothetical protein, at 59,266 to 59,682 _RS10710 EX31_RS10715: EX31_RS10715 - hypothetical protein, at 59,679 to 59,903 _RS10715 EX31_RS10720: EX31_RS10720 - NAD(P)H:quinone oxidoreductase, at 60,120 to 60,809 _RS10720 Position (kb) 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 58.287 kb on - strand, within EX31_RS10705at 58.327 kb on + strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.367 kb on - strand, within EX31_RS10705at 58.374 kb on + strand, within EX31_RS10705at 58.374 kb on + strand, within EX31_RS10705at 58.375 kb on - strand, within EX31_RS10705at 58.388 kb on + strand, within EX31_RS10705at 58.388 kb on + strand, within EX31_RS10705at 58.388 kb on + strand, within EX31_RS10705at 58.388 kb on + strand, within EX31_RS10705at 58.389 kb on - strand, within EX31_RS10705at 58.389 kb on - strand, within EX31_RS10705at 58.389 kb on - strand, within EX31_RS10705at 58.392 kb on + strand, within EX31_RS10705at 58.392 kb on + strand, within EX31_RS10705at 58.392 kb on + strand, within EX31_RS10705at 58.392 kb on + strand, within EX31_RS10705at 58.393 kb on - strand, within EX31_RS10705at 58.393 kb on - strand, within EX31_RS10705at 58.393 kb on - strand, within EX31_RS10705at 58.395 kb on + strand, within EX31_RS10705at 58.395 kb on + strand, within EX31_RS10705at 58.395 kb on + strand, within EX31_RS10705at 58.396 kb on - strand, within EX31_RS10705at 58.473 kb on - strand, within EX31_RS10705at 58.511 kb on + strand, within EX31_RS10705at 58.513 kb on + strand, within EX31_RS10705at 58.514 kb on - strand, within EX31_RS10705at 58.514 kb on - strand, within EX31_RS10705at 58.514 kb on - strand, within EX31_RS10705at 58.628 kb on + strand, within EX31_RS10705at 58.650 kb on - strand, within EX31_RS10705at 58.796 kb on + strand, within EX31_RS10705at 58.796 kb on + strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.798 kb on + strand, within EX31_RS10705at 58.816 kb on - strand, within EX31_RS10705at 58.816 kb on - strand, within EX31_RS10705at 58.936 kb on - strand, within EX31_RS10705at 58.936 kb on - strand, within EX31_RS10705at 58.936 kb on - strand, within EX31_RS10705at 59.177 kb on + strandat 59.178 kb on - strandat 59.178 kb on - strandat 59.214 kb on + strandat 59.215 kb on - strandat 59.317 kb on - strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.452 kb on + strand, within EX31_RS10710at 59.490 kb on + strand, within EX31_RS10710at 59.496 kb on + strand, within EX31_RS10710at 59.533 kb on + strand, within EX31_RS10710at 59.533 kb on + strand, within EX31_RS10710at 59.533 kb on + strand, within EX31_RS10710at 59.534 kb on - strand, within EX31_RS10710at 59.535 kb on + strand, within EX31_RS10710at 59.536 kb on - strand, within EX31_RS10710at 59.615 kb on - strand, within EX31_RS10710at 59.615 kb on - strand, within EX31_RS10710at 59.617 kb on + strand, within EX31_RS10710at 59.617 kb on + strand, within EX31_RS10710at 59.662 kb on + strandat 59.730 kb on + strand, within EX31_RS10715at 59.730 kb on + strand, within EX31_RS10715at 59.730 kb on + strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.733 kb on - strand, within EX31_RS10715at 59.733 kb on - strand, within EX31_RS10715at 59.923 kb on + strandat 59.923 kb on + strandat 59.924 kb on - strandat 59.925 kb on + strandat 59.967 kb on + strandat 59.968 kb on - strandat 59.968 kb on - strandat 59.970 kb on + strandat 59.970 kb on + strandat 59.970 kb on + strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.972 kb on + strandat 59.972 kb on + strandat 59.973 kb on - strandat 59.973 kb on - strandat 59.973 kb on - strandat 59.973 kb on - strandat 59.974 kb on + strandat 59.974 kb on + strandat 59.974 kb on + strandat 59.974 kb on + strandat 59.975 kb on - strandat 59.975 kb on - strandat 59.975 kb on - strandat 59.975 kb on - strandat 59.975 kb on - strandat 60.015 kb on + strandat 60.016 kb on - strandat 60.016 kb on - strandat 60.016 kb on - strandat 60.048 kb on + strandat 60.049 kb on - strandat 60.149 kb on + strandat 60.205 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.316 kb on + strand, within EX31_RS10720at 60.418 kb on - strand, within EX31_RS10720at 60.542 kb on - strand, within EX31_RS10720at 60.542 kb on - strand, within EX31_RS10720at 60.542 kb on - strand, within EX31_RS10720at 60.584 kb on + strand, within EX31_RS10720at 60.584 kb on + strand, within EX31_RS10720at 60.584 kb on + strand, within EX31_RS10720

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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58,287 - EX31_RS10705 0.18 -0.4
58,327 + EX31_RS10705 0.22 +1.5
58,328 - EX31_RS10705 0.22 +2.2
58,328 - EX31_RS10705 0.22 +0.2
58,328 - EX31_RS10705 0.22 -0.4
58,328 - EX31_RS10705 0.22 +0.8
58,328 - EX31_RS10705 0.22 +1.4
58,367 - EX31_RS10705 0.25 -1.4
58,374 + EX31_RS10705 0.26 -0.4
58,374 + EX31_RS10705 0.26 -2.3
58,375 - EX31_RS10705 0.26 -1.7
58,388 + EX31_RS10705 0.27 -1.7
58,388 + EX31_RS10705 0.27 -0.4
58,388 + EX31_RS10705 0.27 +1.3
58,388 + EX31_RS10705 0.27 -1.8
58,389 - EX31_RS10705 0.27 +1.7
58,389 - EX31_RS10705 0.27 +0.9
58,389 - EX31_RS10705 0.27 +0.8
58,392 + EX31_RS10705 0.27 +0.2
58,392 + EX31_RS10705 0.27 +0.2
58,392 + EX31_RS10705 0.27 +1.7
58,392 + EX31_RS10705 0.27 +0.7
58,393 - EX31_RS10705 0.28 -0.3
58,393 - EX31_RS10705 0.28 -2.0
58,393 - EX31_RS10705 0.28 -1.4
58,395 + EX31_RS10705 0.28 -2.5
58,395 + EX31_RS10705 0.28 -0.4
58,395 + EX31_RS10705 0.28 -1.2
58,396 - EX31_RS10705 0.28 -1.4
58,473 - EX31_RS10705 0.35 +0.7
58,511 + EX31_RS10705 0.38 +0.2
58,513 + EX31_RS10705 0.38 -1.8
58,514 - EX31_RS10705 0.38 -1.4
58,514 - EX31_RS10705 0.38 +3.2
58,514 - EX31_RS10705 0.38 -2.2
58,628 + EX31_RS10705 0.48 +0.7
58,650 - EX31_RS10705 0.50 +1.3
58,796 + EX31_RS10705 0.63 -2.8
58,796 + EX31_RS10705 0.63 +2.4
58,797 - EX31_RS10705 0.63 +1.2
58,797 - EX31_RS10705 0.63 -2.8
58,797 - EX31_RS10705 0.63 +1.6
58,797 - EX31_RS10705 0.63 -3.3
58,797 - EX31_RS10705 0.63 -1.8
58,797 - EX31_RS10705 0.63 -2.3
58,797 - EX31_RS10705 0.63 +0.5
58,798 + EX31_RS10705 0.63 -1.8
58,816 - EX31_RS10705 0.65 +1.2
58,816 - EX31_RS10705 0.65 -2.3
58,936 - EX31_RS10705 0.75 +0.6
58,936 - EX31_RS10705 0.75 -0.8
58,936 - EX31_RS10705 0.75 -1.7
59,177 + -2.8
59,178 - +0.7
59,178 - +0.2
59,214 + -0.9
59,215 - +0.2
59,317 - EX31_RS10710 0.12 +0.2
59,374 + EX31_RS10710 0.26 +2.5
59,374 + EX31_RS10710 0.26 -1.8
59,374 + EX31_RS10710 0.26 +0.9
59,374 + EX31_RS10710 0.26 +1.2
59,374 + EX31_RS10710 0.26 -0.4
59,374 + EX31_RS10710 0.26 +1.2
59,375 - EX31_RS10710 0.26 -0.4
59,375 - EX31_RS10710 0.26 +2.5
59,375 - EX31_RS10710 0.26 +2.2
59,375 - EX31_RS10710 0.26 -0.4
59,375 - EX31_RS10710 0.26 +0.9
59,375 - EX31_RS10710 0.26 +1.0
59,375 - EX31_RS10710 0.26 -0.8
59,377 - EX31_RS10710 0.27 +0.9
59,377 - EX31_RS10710 0.27 -0.4
59,377 - EX31_RS10710 0.27 -0.2
59,377 - EX31_RS10710 0.27 +1.0
59,452 + EX31_RS10710 0.45 +0.2
59,490 + EX31_RS10710 0.54 -1.7
59,496 + EX31_RS10710 0.55 -2.4
59,533 + EX31_RS10710 0.64 +2.3
59,533 + EX31_RS10710 0.64 +4.8
59,533 + EX31_RS10710 0.64 -2.7
59,534 - EX31_RS10710 0.64 -0.8
59,535 + EX31_RS10710 0.65 +0.2
59,536 - EX31_RS10710 0.65 +2.0
59,615 - EX31_RS10710 0.84 -1.2
59,615 - EX31_RS10710 0.84 +1.2
59,617 + EX31_RS10710 0.84 +1.4
59,617 + EX31_RS10710 0.84 +2.7
59,662 + -0.4
59,730 + EX31_RS10715 0.23 +3.6
59,730 + EX31_RS10715 0.23 +1.6
59,730 + EX31_RS10715 0.23 -0.8
59,731 - EX31_RS10715 0.23 +1.7
59,731 - EX31_RS10715 0.23 -1.7
59,731 - EX31_RS10715 0.23 +1.2
59,731 - EX31_RS10715 0.23 +0.5
59,731 - EX31_RS10715 0.23 -2.3
59,732 + EX31_RS10715 0.24 +1.2
59,732 + EX31_RS10715 0.24 -0.8
59,732 + EX31_RS10715 0.24 +1.2
59,732 + EX31_RS10715 0.24 -0.8
59,732 + EX31_RS10715 0.24 -1.2
59,732 + EX31_RS10715 0.24 -2.4
59,733 - EX31_RS10715 0.24 -0.8
59,733 - EX31_RS10715 0.24 -0.8
59,923 + -1.7
59,923 + +0.2
59,924 - +0.6
59,925 + -0.4
59,967 + +0.2
59,968 - +1.7
59,968 - -1.7
59,970 + +1.5
59,970 + -0.8
59,970 + -1.8
59,971 - +0.8
59,971 - -2.2
59,971 - +2.2
59,971 - +1.9
59,971 - +0.9
59,972 + +1.5
59,972 + -0.4
59,973 - +1.8
59,973 - -2.0
59,973 - -2.0
59,973 - +0.2
59,974 + -0.1
59,974 + -0.4
59,974 + +1.8
59,974 + -2.0
59,975 - -0.8
59,975 - +1.3
59,975 - +2.0
59,975 - +2.5
59,975 - +1.7
60,015 + +2.7
60,016 - +0.2
60,016 - -0.8
60,016 - +2.4
60,048 + +1.2
60,049 - -2.3
60,149 + +0.4
60,205 + EX31_RS10720 0.12 -1.4
60,243 + EX31_RS10720 0.18 +4.3
60,243 + EX31_RS10720 0.18 +0.2
60,243 + EX31_RS10720 0.18 +0.3
60,243 + EX31_RS10720 0.18 +0.2
60,243 + EX31_RS10720 0.18 -0.8
60,244 - EX31_RS10720 0.18 -0.4
60,244 - EX31_RS10720 0.18 -0.4
60,244 - EX31_RS10720 0.18 +0.2
60,244 - EX31_RS10720 0.18 +1.6
60,244 - EX31_RS10720 0.18 +0.2
60,316 + EX31_RS10720 0.28 -2.3
60,418 - EX31_RS10720 0.43 -2.0
60,542 - EX31_RS10720 0.61 -1.7
60,542 - EX31_RS10720 0.61 +0.2
60,542 - EX31_RS10720 0.61 -1.2
60,584 + EX31_RS10720 0.67 +0.2
60,584 + EX31_RS10720 0.67 -1.1
60,584 + EX31_RS10720 0.67 +0.6

Or see this region's nucleotide sequence