Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10600 and EX31_RS10605 are separated by 317 nucleotides EX31_RS10605 and EX31_RS10610 are separated by 62 nucleotides EX31_RS10610 and EX31_RS10615 are separated by 130 nucleotides
EX31_RS10600: EX31_RS10600 - long-chain-fatty-acid--CoA ligase FadD, at 31,859 to 33,556
_RS10600
EX31_RS10605: EX31_RS10605 - Slp family lipoprotein, at 33,874 to 34,506
_RS10605
EX31_RS10610: EX31_RS10610 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 34,569 to 35,270
_RS10610
EX31_RS10615: EX31_RS10615 - ATP-dependent DNA helicase, at 35,401 to 37,314
_RS10615
Position (kb) 33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.920 kb on - strand, within EX31_RS10600 at 32.941 kb on + strand, within EX31_RS10600 at 32.964 kb on + strand, within EX31_RS10600 at 32.964 kb on + strand, within EX31_RS10600 at 32.965 kb on - strand, within EX31_RS10600 at 33.024 kb on + strand, within EX31_RS10600 at 33.047 kb on - strand, within EX31_RS10600 at 33.048 kb on + strand, within EX31_RS10600 at 33.049 kb on - strand, within EX31_RS10600 at 33.049 kb on - strand, within EX31_RS10600 at 33.049 kb on - strand, within EX31_RS10600 at 33.124 kb on + strand, within EX31_RS10600 at 33.157 kb on + strand, within EX31_RS10600 at 33.157 kb on + strand, within EX31_RS10600 at 33.157 kb on + strand, within EX31_RS10600 at 33.431 kb on - strand at 33.431 kb on - strand at 33.461 kb on - strand at 33.461 kb on - strand at 33.492 kb on + strand at 33.559 kb on + strand at 33.560 kb on - strand at 33.698 kb on + strand at 33.699 kb on - strand at 33.699 kb on - strand at 33.752 kb on - strand at 33.752 kb on - strand at 33.752 kb on - strand at 33.817 kb on - strand at 33.913 kb on - strand at 33.913 kb on - strand at 33.913 kb on - strand at 33.913 kb on - strand at 33.913 kb on - strand at 33.916 kb on - strand at 33.916 kb on - strand at 33.916 kb on - strand at 33.916 kb on - strand at 33.916 kb on - strand at 33.916 kb on - strand at 33.918 kb on - strand at 34.047 kb on - strand, within EX31_RS10605 at 34.135 kb on + strand, within EX31_RS10605 at 34.136 kb on - strand, within EX31_RS10605 at 34.178 kb on + strand, within EX31_RS10605 at 34.179 kb on - strand, within EX31_RS10605 at 34.179 kb on - strand, within EX31_RS10605 at 34.179 kb on - strand, within EX31_RS10605 at 34.179 kb on - strand, within EX31_RS10605 at 34.418 kb on - strand, within EX31_RS10605 at 34.458 kb on + strand at 34.462 kb on - strand at 34.469 kb on - strand at 34.500 kb on + strand at 34.501 kb on - strand at 34.508 kb on - strand at 34.596 kb on - strand at 34.605 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.302 kb on - strand at 35.313 kb on - strand at 35.313 kb on - strand at 35.313 kb on - strand at 35.358 kb on - strand at 35.358 kb on - strand at 35.358 kb on - strand at 35.360 kb on - strand at 35.360 kb on - strand at 35.386 kb on - strand at 35.403 kb on - strand at 35.403 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 32,920 - EX31_RS10600 0.62 +0.7 32,941 + EX31_RS10600 0.64 -0.2 32,964 + EX31_RS10600 0.65 -1.8 32,964 + EX31_RS10600 0.65 -1.7 32,965 - EX31_RS10600 0.65 -1.4 33,024 + EX31_RS10600 0.69 +3.0 33,047 - EX31_RS10600 0.70 -0.4 33,048 + EX31_RS10600 0.70 +3.2 33,049 - EX31_RS10600 0.70 -1.2 33,049 - EX31_RS10600 0.70 -0.8 33,049 - EX31_RS10600 0.70 -2.5 33,124 + EX31_RS10600 0.74 -3.0 33,157 + EX31_RS10600 0.76 -0.8 33,157 + EX31_RS10600 0.76 -1.7 33,157 + EX31_RS10600 0.76 +2.0 33,431 - +2.4 33,431 - +1.2 33,461 - -0.8 33,461 - -0.4 33,492 + -0.4 33,559 + -1.7 33,560 - -2.9 33,698 + +1.3 33,699 - +0.2 33,699 - -0.6 33,752 - +3.2 33,752 - +0.2 33,752 - -0.8 33,817 - +1.2 33,913 - +0.6 33,913 - -0.4 33,913 - -2.0 33,913 - -0.0 33,913 - -0.4 33,916 - -0.6 33,916 - -0.8 33,916 - -2.5 33,916 - -0.8 33,916 - +1.3 33,916 - -1.2 33,918 - -1.8 34,047 - EX31_RS10605 0.27 -1.0 34,135 + EX31_RS10605 0.41 -1.7 34,136 - EX31_RS10605 0.41 -0.8 34,178 + EX31_RS10605 0.48 +0.2 34,179 - EX31_RS10605 0.48 +0.9 34,179 - EX31_RS10605 0.48 -1.7 34,179 - EX31_RS10605 0.48 -1.4 34,179 - EX31_RS10605 0.48 -2.2 34,418 - EX31_RS10605 0.86 -0.4 34,458 + -1.4 34,462 - +2.2 34,469 - +0.9 34,500 + -0.8 34,501 - +1.0 34,508 - +2.0 34,596 - +0.6 34,605 - +1.0 35,302 - +2.6 35,302 - -2.5 35,302 - +1.2 35,302 - -0.2 35,302 - +0.9 35,302 - +1.7 35,302 - +1.2 35,313 - +1.5 35,313 - +1.8 35,313 - +3.2 35,358 - +1.3 35,358 - -0.4 35,358 - -2.8 35,360 - +0.2 35,360 - +1.2 35,386 - -0.8 35,403 - -1.8 35,403 - -0.8
Or see this region's nucleotide sequence