Strain Fitness in Rahnella sp. WP5 around EX31_RS09895

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09890 and EX31_RS09895 are separated by 350 nucleotidesEX31_RS09895 and EX31_RS09900 are separated by 463 nucleotidesEX31_RS09900 and EX31_RS09905 are separated by 114 nucleotides EX31_RS09890: EX31_RS09890 - HTH-type transcriptional regulator CysB, at 185,691 to 186,665 _RS09890 EX31_RS09895: EX31_RS09895 - type I DNA topoisomerase, at 187,016 to 189,613 _RS09895 EX31_RS09900: EX31_RS09900 - YciN family protein, at 190,077 to 190,328 _RS09900 EX31_RS09905: EX31_RS09905 - protease SohB, at 190,443 to 191,486 _RS09905 Position (kb) 187 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 186.074 kb on + strand, within EX31_RS09890at 186.074 kb on + strand, within EX31_RS09890at 186.075 kb on - strand, within EX31_RS09890at 186.075 kb on - strand, within EX31_RS09890at 186.075 kb on - strand, within EX31_RS09890at 186.077 kb on - strand, within EX31_RS09890at 186.077 kb on - strand, within EX31_RS09890at 186.077 kb on - strand, within EX31_RS09890at 186.126 kb on - strand, within EX31_RS09890at 186.176 kb on - strand, within EX31_RS09890at 186.203 kb on - strand, within EX31_RS09890at 186.291 kb on - strand, within EX31_RS09890at 186.330 kb on - strand, within EX31_RS09890at 186.363 kb on - strand, within EX31_RS09890at 186.363 kb on - strand, within EX31_RS09890at 186.363 kb on - strand, within EX31_RS09890at 186.380 kb on - strand, within EX31_RS09890at 186.380 kb on - strand, within EX31_RS09890at 186.400 kb on + strand, within EX31_RS09890at 186.405 kb on - strand, within EX31_RS09890at 186.405 kb on - strand, within EX31_RS09890at 186.405 kb on - strand, within EX31_RS09890at 186.405 kb on - strand, within EX31_RS09890at 186.405 kb on - strand, within EX31_RS09890at 186.405 kb on - strand, within EX31_RS09890at 186.405 kb on - strand, within EX31_RS09890at 186.441 kb on - strand, within EX31_RS09890at 186.448 kb on - strand, within EX31_RS09890at 186.448 kb on - strand, within EX31_RS09890at 186.448 kb on - strand, within EX31_RS09890at 186.448 kb on - strand, within EX31_RS09890at 186.448 kb on - strand, within EX31_RS09890at 186.587 kb on - strandat 186.587 kb on - strandat 186.587 kb on - strandat 186.627 kb on - strandat 186.666 kb on - strandat 186.672 kb on + strandat 186.672 kb on + strandat 186.673 kb on - strandat 186.673 kb on - strandat 186.673 kb on - strandat 186.673 kb on - strandat 186.673 kb on - strandat 186.860 kb on + strandat 186.860 kb on + strandat 186.861 kb on - strandat 186.861 kb on - strandat 186.861 kb on - strandat 186.875 kb on + strandat 186.876 kb on - strandat 186.920 kb on + strandat 186.921 kb on - strandat 186.921 kb on - strandat 186.934 kb on + strandat 186.935 kb on - strandat 186.942 kb on - strandat 187.003 kb on - strandat 187.003 kb on - strandat 187.003 kb on - strandat 187.003 kb on - strandat 187.018 kb on - strandat 187.040 kb on - strandat 187.040 kb on - strandat 187.040 kb on - strandat 187.040 kb on - strandat 187.095 kb on - strandat 187.095 kb on - strandat 187.095 kb on - strandat 187.095 kb on - strandat 187.095 kb on - strandat 187.095 kb on - strandat 187.099 kb on - strandat 187.099 kb on - strandat 187.099 kb on - strandat 187.099 kb on - strandat 187.099 kb on - strandat 187.099 kb on - strandat 187.099 kb on - strandat 187.139 kb on - strandat 187.139 kb on - strandat 187.309 kb on - strand, within EX31_RS09895at 187.432 kb on - strand, within EX31_RS09895at 187.432 kb on - strand, within EX31_RS09895at 187.432 kb on - strand, within EX31_RS09895at 187.432 kb on - strand, within EX31_RS09895at 187.432 kb on - strand, within EX31_RS09895at 187.436 kb on - strand, within EX31_RS09895at 187.436 kb on - strand, within EX31_RS09895at 187.504 kb on - strand, within EX31_RS09895at 189.667 kb on - strandat 189.697 kb on - strandat 189.699 kb on - strandat 189.792 kb on - strandat 189.836 kb on - strandat 189.889 kb on + strandat 189.889 kb on + strandat 189.890 kb on - strandat 189.890 kb on - strandat 189.890 kb on - strandat 189.915 kb on + strandat 189.916 kb on - strandat 189.916 kb on - strandat 189.916 kb on - strandat 189.978 kb on - strandat 190.045 kb on - strandat 190.045 kb on - strandat 190.057 kb on + strandat 190.057 kb on + strandat 190.057 kb on + strandat 190.057 kb on + strandat 190.057 kb on + strandat 190.057 kb on + strandat 190.058 kb on - strandat 190.058 kb on - strandat 190.058 kb on - strandat 190.069 kb on + strandat 190.073 kb on + strandat 190.073 kb on + strandat 190.073 kb on + strandat 190.088 kb on + strandat 190.088 kb on + strandat 190.100 kb on + strandat 190.155 kb on + strand, within EX31_RS09900at 190.155 kb on + strand, within EX31_RS09900at 190.155 kb on + strand, within EX31_RS09900at 190.155 kb on + strand, within EX31_RS09900at 190.156 kb on - strand, within EX31_RS09900at 190.156 kb on - strand, within EX31_RS09900at 190.271 kb on + strand, within EX31_RS09900at 190.271 kb on + strand, within EX31_RS09900at 190.271 kb on + strand, within EX31_RS09900at 190.272 kb on - strand, within EX31_RS09900at 190.272 kb on - strand, within EX31_RS09900at 190.274 kb on + strand, within EX31_RS09900at 190.274 kb on + strand, within EX31_RS09900at 190.274 kb on + strand, within EX31_RS09900at 190.274 kb on + strand, within EX31_RS09900at 190.274 kb on + strand, within EX31_RS09900at 190.274 kb on + strand, within EX31_RS09900at 190.275 kb on - strand, within EX31_RS09900at 190.343 kb on + strandat 190.343 kb on + strandat 190.346 kb on + strandat 190.346 kb on + strandat 190.346 kb on + strandat 190.346 kb on + strandat 190.347 kb on - strandat 190.353 kb on - strandat 190.354 kb on + strandat 190.354 kb on + strandat 190.354 kb on + strandat 190.354 kb on + strandat 190.354 kb on + strandat 190.354 kb on + strandat 190.354 kb on + strandat 190.354 kb on + strandat 190.355 kb on - strandat 190.355 kb on - strandat 190.379 kb on + strandat 190.393 kb on - strandat 190.421 kb on + strandat 190.422 kb on - strandat 190.444 kb on + strandat 190.444 kb on + strandat 190.444 kb on + strandat 190.471 kb on - strandat 190.471 kb on - strandat 190.563 kb on + strand, within EX31_RS09905at 190.564 kb on - strand, within EX31_RS09905

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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186,074 + EX31_RS09890 0.39 -1.2
186,074 + EX31_RS09890 0.39 -0.8
186,075 - EX31_RS09890 0.39 -0.8
186,075 - EX31_RS09890 0.39 +1.6
186,075 - EX31_RS09890 0.39 +0.9
186,077 - EX31_RS09890 0.40 +0.6
186,077 - EX31_RS09890 0.40 +2.2
186,077 - EX31_RS09890 0.40 +4.5
186,126 - EX31_RS09890 0.45 -0.8
186,176 - EX31_RS09890 0.50 -0.4
186,203 - EX31_RS09890 0.53 +0.4
186,291 - EX31_RS09890 0.62 -1.4
186,330 - EX31_RS09890 0.66 -0.4
186,363 - EX31_RS09890 0.69 +2.5
186,363 - EX31_RS09890 0.69 +3.2
186,363 - EX31_RS09890 0.69 +0.2
186,380 - EX31_RS09890 0.71 +1.3
186,380 - EX31_RS09890 0.71 +1.7
186,400 + EX31_RS09890 0.73 +1.2
186,405 - EX31_RS09890 0.73 -2.3
186,405 - EX31_RS09890 0.73 -2.0
186,405 - EX31_RS09890 0.73 -2.4
186,405 - EX31_RS09890 0.73 +1.2
186,405 - EX31_RS09890 0.73 +0.5
186,405 - EX31_RS09890 0.73 -0.5
186,405 - EX31_RS09890 0.73 -1.2
186,441 - EX31_RS09890 0.77 +1.2
186,448 - EX31_RS09890 0.78 +2.2
186,448 - EX31_RS09890 0.78 -1.8
186,448 - EX31_RS09890 0.78 -1.2
186,448 - EX31_RS09890 0.78 -2.3
186,448 - EX31_RS09890 0.78 -2.3
186,587 - +1.2
186,587 - -2.8
186,587 - +1.6
186,627 - +1.5
186,666 - -1.7
186,672 + +0.2
186,672 + -1.7
186,673 - +1.3
186,673 - -2.0
186,673 - -0.7
186,673 - +1.3
186,673 - -0.4
186,860 + +0.2
186,860 + +2.2
186,861 - +1.0
186,861 - +0.7
186,861 - +2.4
186,875 + +0.2
186,876 - -2.2
186,920 + -1.7
186,921 - +2.6
186,921 - -2.7
186,934 + +1.9
186,935 - +0.8
186,942 - -0.8
187,003 - -3.1
187,003 - +0.6
187,003 - -3.2
187,003 - +0.2
187,018 - +3.4
187,040 - +0.7
187,040 - +1.2
187,040 - +2.0
187,040 - -2.0
187,095 - -1.8
187,095 - -1.8
187,095 - +1.6
187,095 - +0.2
187,095 - +1.2
187,095 - +2.5
187,099 - +1.3
187,099 - +2.5
187,099 - +0.3
187,099 - -1.7
187,099 - -1.7
187,099 - +0.8
187,099 - +2.2
187,139 - +1.3
187,139 - -1.7
187,309 - EX31_RS09895 0.11 +0.6
187,432 - EX31_RS09895 0.16 -1.7
187,432 - EX31_RS09895 0.16 +1.2
187,432 - EX31_RS09895 0.16 -1.2
187,432 - EX31_RS09895 0.16 -0.4
187,432 - EX31_RS09895 0.16 +3.7
187,436 - EX31_RS09895 0.16 -1.2
187,436 - EX31_RS09895 0.16 +0.2
187,504 - EX31_RS09895 0.19 -0.4
189,667 - -1.7
189,697 - -1.3
189,699 - +1.6
189,792 - -0.1
189,836 - +0.9
189,889 + +0.7
189,889 + +0.2
189,890 - +1.0
189,890 - -0.8
189,890 - -1.8
189,915 + +3.5
189,916 - +0.2
189,916 - +1.7
189,916 - -0.8
189,978 - -1.4
190,045 - -1.2
190,045 - +0.8
190,057 + -0.8
190,057 + +2.5
190,057 + -1.2
190,057 + -2.2
190,057 + +2.7
190,057 + -2.5
190,058 - -1.2
190,058 - +1.4
190,058 - +1.2
190,069 + -0.3
190,073 + -1.2
190,073 + -2.3
190,073 + -2.3
190,088 + -0.4
190,088 + -2.0
190,100 + +5.4
190,155 + EX31_RS09900 0.31 -1.4
190,155 + EX31_RS09900 0.31 -2.8
190,155 + EX31_RS09900 0.31 +0.2
190,155 + EX31_RS09900 0.31 +0.6
190,156 - EX31_RS09900 0.31 -1.4
190,156 - EX31_RS09900 0.31 -1.2
190,271 + EX31_RS09900 0.77 +2.4
190,271 + EX31_RS09900 0.77 -1.7
190,271 + EX31_RS09900 0.77 -1.4
190,272 - EX31_RS09900 0.77 +0.2
190,272 - EX31_RS09900 0.77 -2.2
190,274 + EX31_RS09900 0.78 +1.6
190,274 + EX31_RS09900 0.78 +0.5
190,274 + EX31_RS09900 0.78 +1.9
190,274 + EX31_RS09900 0.78 +2.7
190,274 + EX31_RS09900 0.78 +0.9
190,274 + EX31_RS09900 0.78 +2.7
190,275 - EX31_RS09900 0.79 +1.2
190,343 + -1.4
190,343 + -1.1
190,346 + -1.2
190,346 + -1.8
190,346 + -1.4
190,346 + -0.3
190,347 - +1.8
190,353 - +3.0
190,354 + +2.9
190,354 + +1.2
190,354 + +0.2
190,354 + +1.3
190,354 + +0.5
190,354 + +0.7
190,354 + -0.8
190,354 + +3.7
190,355 - -0.5
190,355 - -2.0
190,379 + +0.1
190,393 - +2.5
190,421 + -1.4
190,422 - +0.2
190,444 + +1.2
190,444 + +1.6
190,444 + -1.7
190,471 - +0.2
190,471 - +2.7
190,563 + EX31_RS09905 0.11 -1.2
190,564 - EX31_RS09905 0.12 -0.4

Or see this region's nucleotide sequence