Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09840 and EX31_RS09845 are separated by 272 nucleotides EX31_RS09845 and EX31_RS09850 are separated by 231 nucleotides EX31_RS09850 and EX31_RS09855 are separated by 12 nucleotides
EX31_RS09840: EX31_RS09840 - L-ribulose-5-phosphate 4-epimerase, at 176,300 to 176,995
_RS09840
EX31_RS09845: EX31_RS09845 - osmotically-inducible lipoprotein OsmB, at 177,268 to 177,486
_RS09845
EX31_RS09850: EX31_RS09850 - stress response translation initiation inhibitor YciH, at 177,718 to 178,047
_RS09850
EX31_RS09855: EX31_RS09855 - orotidine-5'-phosphate decarboxylase, at 178,060 to 178,788
_RS09855
Position (kb) 177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 176.301 kb on + strand at 176.302 kb on - strand at 176.314 kb on - strand at 176.347 kb on + strand at 176.347 kb on + strand at 176.348 kb on - strand at 176.413 kb on - strand, within EX31_RS09840 at 176.498 kb on + strand, within EX31_RS09840 at 176.499 kb on - strand, within EX31_RS09840 at 176.499 kb on - strand, within EX31_RS09840 at 176.575 kb on - strand, within EX31_RS09840 at 176.634 kb on + strand, within EX31_RS09840 at 176.710 kb on + strand, within EX31_RS09840 at 176.746 kb on - strand, within EX31_RS09840 at 176.924 kb on - strand, within EX31_RS09840 at 176.966 kb on + strand at 176.970 kb on - strand at 176.970 kb on - strand at 176.990 kb on + strand at 176.990 kb on + strand at 177.012 kb on + strand at 177.013 kb on - strand at 177.013 kb on - strand at 177.077 kb on - strand at 177.095 kb on + strand at 177.095 kb on + strand at 177.183 kb on + strand at 177.206 kb on + strand at 177.206 kb on + strand at 177.207 kb on - strand at 177.226 kb on + strand at 177.226 kb on + strand at 177.230 kb on + strand at 177.283 kb on - strand at 177.351 kb on + strand, within EX31_RS09845 at 177.352 kb on - strand, within EX31_RS09845 at 177.428 kb on + strand, within EX31_RS09845 at 177.437 kb on + strand, within EX31_RS09845 at 177.437 kb on + strand, within EX31_RS09845 at 177.437 kb on + strand, within EX31_RS09845 at 177.437 kb on + strand, within EX31_RS09845 at 177.459 kb on + strand, within EX31_RS09845 at 177.460 kb on - strand, within EX31_RS09845 at 177.480 kb on + strand at 177.501 kb on + strand at 177.502 kb on - strand at 177.508 kb on + strand at 177.512 kb on + strand at 177.549 kb on - strand at 177.648 kb on - strand at 177.685 kb on - strand at 177.685 kb on - strand at 177.688 kb on - strand at 177.709 kb on - strand at 178.021 kb on + strand at 178.022 kb on - strand at 178.140 kb on - strand, within EX31_RS09855 at 178.140 kb on - strand, within EX31_RS09855 at 178.140 kb on - strand, within EX31_RS09855 at 178.180 kb on - strand, within EX31_RS09855 at 178.292 kb on - strand, within EX31_RS09855 at 178.292 kb on - strand, within EX31_RS09855 at 178.367 kb on - strand, within EX31_RS09855 at 178.367 kb on - strand, within EX31_RS09855 at 178.367 kb on - strand, within EX31_RS09855
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 176,301 + -2.7 176,302 - -0.4 176,314 - +0.2 176,347 + +0.2 176,347 + +0.7 176,348 - -2.0 176,413 - EX31_RS09840 0.16 +1.2 176,498 + EX31_RS09840 0.28 +0.2 176,499 - EX31_RS09840 0.29 -2.5 176,499 - EX31_RS09840 0.29 +0.8 176,575 - EX31_RS09840 0.40 +0.8 176,634 + EX31_RS09840 0.48 -2.3 176,710 + EX31_RS09840 0.59 -2.0 176,746 - EX31_RS09840 0.64 -0.4 176,924 - EX31_RS09840 0.90 +0.5 176,966 + +0.8 176,970 - -1.2 176,970 - +2.0 176,990 + +1.2 176,990 + -0.8 177,012 + -1.7 177,013 - -1.2 177,013 - -0.8 177,077 - -1.4 177,095 + +0.2 177,095 + +1.0 177,183 + -0.8 177,206 + -1.7 177,206 + -3.2 177,207 - +0.2 177,226 + +0.5 177,226 + -1.4 177,230 + -2.4 177,283 - +1.7 177,351 + EX31_RS09845 0.38 +1.7 177,352 - EX31_RS09845 0.38 -1.4 177,428 + EX31_RS09845 0.73 -1.4 177,437 + EX31_RS09845 0.77 -1.4 177,437 + EX31_RS09845 0.77 -1.2 177,437 + EX31_RS09845 0.77 +0.6 177,437 + EX31_RS09845 0.77 -2.5 177,459 + EX31_RS09845 0.87 +0.2 177,460 - EX31_RS09845 0.88 +3.5 177,480 + -0.8 177,501 + +0.2 177,502 - +2.5 177,508 + -3.2 177,512 + -1.4 177,549 - -0.8 177,648 - +1.2 177,685 - +0.2 177,685 - +2.4 177,688 - +3.2 177,709 - -1.7 178,021 + -1.7 178,022 - -0.4 178,140 - EX31_RS09855 0.11 +0.2 178,140 - EX31_RS09855 0.11 -1.4 178,140 - EX31_RS09855 0.11 -2.0 178,180 - EX31_RS09855 0.16 -2.0 178,292 - EX31_RS09855 0.32 +0.5 178,292 - EX31_RS09855 0.32 +1.9 178,367 - EX31_RS09855 0.42 -2.4 178,367 - EX31_RS09855 0.42 -0.1 178,367 - EX31_RS09855 0.42 +0.7
Or see this region's nucleotide sequence