Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09725 and EX31_RS09730 are separated by 318 nucleotides EX31_RS09730 and EX31_RS09735 are separated by 215 nucleotides
EX31_RS09725: EX31_RS09725 - PQQ-dependent sugar dehydrogenase, at 146,089 to 147,240
_RS09725
EX31_RS09730: EX31_RS09730 - sugar ABC transporter substrate-binding protein, at 147,559 to 148,632
_RS09730
EX31_RS09735: EX31_RS09735 - glycoside-pentoside-hexuronide family transporter, at 148,848 to 150,215
_RS09735
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 146.562 kb on + strand, within EX31_RS09725 at 146.795 kb on - strand, within EX31_RS09725 at 146.903 kb on + strand, within EX31_RS09725 at 146.903 kb on + strand, within EX31_RS09725 at 147.214 kb on + strand at 147.215 kb on - strand at 147.240 kb on + strand at 147.241 kb on - strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.262 kb on - strand at 147.284 kb on - strand at 147.353 kb on - strand at 147.353 kb on - strand at 147.354 kb on + strand at 147.380 kb on - strand at 147.383 kb on + strand at 147.384 kb on - strand at 147.388 kb on + strand at 147.442 kb on + strand at 147.744 kb on + strand, within EX31_RS09730 at 147.778 kb on - strand, within EX31_RS09730 at 147.789 kb on + strand, within EX31_RS09730 at 147.789 kb on + strand, within EX31_RS09730 at 147.881 kb on - strand, within EX31_RS09730 at 147.918 kb on + strand, within EX31_RS09730 at 148.048 kb on - strand, within EX31_RS09730 at 148.106 kb on - strand, within EX31_RS09730 at 148.113 kb on + strand, within EX31_RS09730 at 148.113 kb on + strand, within EX31_RS09730 at 148.113 kb on + strand, within EX31_RS09730 at 148.191 kb on + strand, within EX31_RS09730 at 148.279 kb on + strand, within EX31_RS09730 at 148.282 kb on - strand, within EX31_RS09730 at 148.335 kb on - strand, within EX31_RS09730 at 148.474 kb on + strand, within EX31_RS09730 at 148.475 kb on - strand, within EX31_RS09730 at 148.673 kb on + strand at 148.674 kb on - strand at 148.752 kb on - strand at 148.752 kb on - strand at 148.762 kb on - strand at 148.786 kb on - strand at 148.818 kb on - strand at 148.832 kb on + strand at 148.938 kb on + strand at 148.939 kb on - strand at 148.984 kb on - strand at 148.984 kb on - strand at 149.091 kb on + strand, within EX31_RS09735 at 149.092 kb on - strand, within EX31_RS09735 at 149.139 kb on + strand, within EX31_RS09735 at 149.140 kb on - strand, within EX31_RS09735 at 149.140 kb on - strand, within EX31_RS09735 at 149.140 kb on - strand, within EX31_RS09735 at 149.140 kb on - strand, within EX31_RS09735 at 149.193 kb on + strand, within EX31_RS09735 at 149.193 kb on + strand, within EX31_RS09735 at 149.194 kb on - strand, within EX31_RS09735 at 149.194 kb on - strand, within EX31_RS09735 at 149.194 kb on - strand, within EX31_RS09735 at 149.194 kb on - strand, within EX31_RS09735 at 149.194 kb on - strand, within EX31_RS09735 at 149.194 kb on - strand, within EX31_RS09735 at 149.195 kb on + strand, within EX31_RS09735 at 149.214 kb on + strand, within EX31_RS09735 at 149.214 kb on + strand, within EX31_RS09735 at 149.214 kb on + strand, within EX31_RS09735 at 149.214 kb on + strand, within EX31_RS09735 at 149.215 kb on - strand, within EX31_RS09735 at 149.215 kb on - strand, within EX31_RS09735 at 149.215 kb on - strand, within EX31_RS09735 at 149.215 kb on - strand, within EX31_RS09735 at 149.215 kb on - strand, within EX31_RS09735 at 149.258 kb on + strand, within EX31_RS09735 at 149.258 kb on + strand, within EX31_RS09735 at 149.259 kb on - strand, within EX31_RS09735 at 149.279 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.329 kb on + strand, within EX31_RS09735 at 149.330 kb on - strand, within EX31_RS09735 at 149.330 kb on - strand, within EX31_RS09735 at 149.330 kb on - strand, within EX31_RS09735 at 149.330 kb on - strand, within EX31_RS09735 at 149.358 kb on - strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.604 kb on + strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.605 kb on - strand, within EX31_RS09735 at 149.607 kb on + strand, within EX31_RS09735 at 149.607 kb on + strand, within EX31_RS09735 at 149.607 kb on + strand, within EX31_RS09735 at 149.616 kb on + strand, within EX31_RS09735 at 149.616 kb on + strand, within EX31_RS09735 at 149.616 kb on + strand, within EX31_RS09735 at 149.617 kb on - strand, within EX31_RS09735 at 149.617 kb on - strand, within EX31_RS09735
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 146,562 + EX31_RS09725 0.41 -0.3 146,795 - EX31_RS09725 0.61 -0.8 146,903 + EX31_RS09725 0.71 -0.1 146,903 + EX31_RS09725 0.71 +2.2 147,214 + +1.2 147,215 - +0.2 147,240 + +1.6 147,241 - -0.4 147,261 + -0.4 147,261 + -1.2 147,262 - -1.7 147,284 - -2.0 147,353 - +1.3 147,353 - +0.7 147,354 + +0.2 147,380 - +1.2 147,383 + -2.3 147,384 - +3.2 147,388 + +0.4 147,442 + +0.9 147,744 + EX31_RS09730 0.17 +3.9 147,778 - EX31_RS09730 0.20 +2.2 147,789 + EX31_RS09730 0.21 +0.2 147,789 + EX31_RS09730 0.21 -1.2 147,881 - EX31_RS09730 0.30 +1.6 147,918 + EX31_RS09730 0.33 +1.8 148,048 - EX31_RS09730 0.46 +1.2 148,106 - EX31_RS09730 0.51 +1.2 148,113 + EX31_RS09730 0.52 -1.8 148,113 + EX31_RS09730 0.52 +0.3 148,113 + EX31_RS09730 0.52 -1.2 148,191 + EX31_RS09730 0.59 +0.8 148,279 + EX31_RS09730 0.67 -0.8 148,282 - EX31_RS09730 0.67 +5.0 148,335 - EX31_RS09730 0.72 +1.6 148,474 + EX31_RS09730 0.85 +1.3 148,475 - EX31_RS09730 0.85 -2.3 148,673 + +0.2 148,674 - +1.2 148,752 - -0.3 148,752 - -2.2 148,762 - -1.2 148,786 - -0.4 148,818 - +0.2 148,832 + +1.2 148,938 + -1.2 148,939 - -0.4 148,984 - -1.2 148,984 - -1.2 149,091 + EX31_RS09735 0.18 +0.8 149,092 - EX31_RS09735 0.18 +3.7 149,139 + EX31_RS09735 0.21 -0.1 149,140 - EX31_RS09735 0.21 -0.8 149,140 - EX31_RS09735 0.21 -2.6 149,140 - EX31_RS09735 0.21 +0.6 149,140 - EX31_RS09735 0.21 +3.1 149,193 + EX31_RS09735 0.25 +2.0 149,193 + EX31_RS09735 0.25 -0.8 149,194 - EX31_RS09735 0.25 +1.6 149,194 - EX31_RS09735 0.25 +3.2 149,194 - EX31_RS09735 0.25 -0.8 149,194 - EX31_RS09735 0.25 -0.6 149,194 - EX31_RS09735 0.25 +2.6 149,194 - EX31_RS09735 0.25 +3.7 149,195 + EX31_RS09735 0.25 +3.5 149,214 + EX31_RS09735 0.27 +2.0 149,214 + EX31_RS09735 0.27 -0.1 149,214 + EX31_RS09735 0.27 +1.2 149,214 + EX31_RS09735 0.27 -1.4 149,215 - EX31_RS09735 0.27 +0.2 149,215 - EX31_RS09735 0.27 -0.8 149,215 - EX31_RS09735 0.27 -0.4 149,215 - EX31_RS09735 0.27 +1.0 149,215 - EX31_RS09735 0.27 -1.8 149,258 + EX31_RS09735 0.30 +0.2 149,258 + EX31_RS09735 0.30 -0.8 149,259 - EX31_RS09735 0.30 -0.8 149,279 + EX31_RS09735 0.32 -0.0 149,329 + EX31_RS09735 0.35 -2.7 149,329 + EX31_RS09735 0.35 +3.2 149,329 + EX31_RS09735 0.35 -1.7 149,329 + EX31_RS09735 0.35 -2.4 149,329 + EX31_RS09735 0.35 -2.4 149,329 + EX31_RS09735 0.35 +1.6 149,330 - EX31_RS09735 0.35 -1.4 149,330 - EX31_RS09735 0.35 +0.2 149,330 - EX31_RS09735 0.35 -1.4 149,330 - EX31_RS09735 0.35 +2.2 149,358 - EX31_RS09735 0.37 +1.2 149,604 + EX31_RS09735 0.55 -1.4 149,604 + EX31_RS09735 0.55 -1.2 149,604 + EX31_RS09735 0.55 +0.8 149,604 + EX31_RS09735 0.55 +3.5 149,604 + EX31_RS09735 0.55 +1.2 149,605 - EX31_RS09735 0.55 +1.2 149,605 - EX31_RS09735 0.55 +2.6 149,605 - EX31_RS09735 0.55 +1.4 149,605 - EX31_RS09735 0.55 -1.4 149,605 - EX31_RS09735 0.55 -1.6 149,607 + EX31_RS09735 0.55 +0.9 149,607 + EX31_RS09735 0.55 +3.5 149,607 + EX31_RS09735 0.55 +0.7 149,616 + EX31_RS09735 0.56 -2.0 149,616 + EX31_RS09735 0.56 +0.0 149,616 + EX31_RS09735 0.56 -0.3 149,617 - EX31_RS09735 0.56 -0.6 149,617 - EX31_RS09735 0.56 -1.2
Or see this region's nucleotide sequence