Strain Fitness in Rahnella sp. WP5 around EX31_RS09255

Experiment: NLDM_metabolites (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS09250 and EX31_RS09255 are separated by 142 nucleotidesEX31_RS09255 and EX31_RS09260 are separated by 36 nucleotides EX31_RS09250: EX31_RS09250 - ABC transporter permease subunit, at 48,151 to 49,071 _RS09250 EX31_RS09255: EX31_RS09255 - glutathione ABC transporter substrate-binding protein, at 49,214 to 50,758 _RS09255 EX31_RS09260: EX31_RS09260 - ABC transporter ATP-binding protein, at 50,795 to 52,663 _RS09260 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 48.433 kb on + strand, within EX31_RS09250at 48.461 kb on + strand, within EX31_RS09250at 48.462 kb on - strand, within EX31_RS09250at 48.552 kb on + strand, within EX31_RS09250at 48.553 kb on - strand, within EX31_RS09250at 48.553 kb on - strand, within EX31_RS09250at 48.553 kb on - strand, within EX31_RS09250at 48.570 kb on + strand, within EX31_RS09250at 48.809 kb on - strand, within EX31_RS09250at 48.809 kb on - strand, within EX31_RS09250at 48.830 kb on + strand, within EX31_RS09250at 48.959 kb on + strand, within EX31_RS09250at 48.960 kb on - strand, within EX31_RS09250at 49.071 kb on + strandat 49.071 kb on + strandat 49.071 kb on + strandat 49.137 kb on + strandat 49.167 kb on + strandat 49.220 kb on - strandat 49.220 kb on - strandat 49.363 kb on - strandat 49.437 kb on + strand, within EX31_RS09255at 49.437 kb on + strand, within EX31_RS09255at 49.438 kb on - strand, within EX31_RS09255at 49.440 kb on + strand, within EX31_RS09255at 49.440 kb on + strand, within EX31_RS09255at 49.440 kb on + strand, within EX31_RS09255at 49.441 kb on - strand, within EX31_RS09255at 49.450 kb on + strand, within EX31_RS09255at 49.451 kb on - strand, within EX31_RS09255at 49.451 kb on - strand, within EX31_RS09255at 49.452 kb on + strand, within EX31_RS09255at 49.453 kb on - strand, within EX31_RS09255at 49.539 kb on + strand, within EX31_RS09255at 49.676 kb on - strand, within EX31_RS09255at 49.766 kb on - strand, within EX31_RS09255at 49.766 kb on - strand, within EX31_RS09255at 49.767 kb on + strand, within EX31_RS09255at 49.767 kb on + strand, within EX31_RS09255at 49.767 kb on + strand, within EX31_RS09255at 49.767 kb on + strand, within EX31_RS09255at 49.767 kb on + strand, within EX31_RS09255at 49.767 kb on + strand, within EX31_RS09255at 49.767 kb on + strand, within EX31_RS09255at 49.767 kb on + strand, within EX31_RS09255at 49.768 kb on - strand, within EX31_RS09255at 49.768 kb on - strand, within EX31_RS09255at 49.768 kb on - strand, within EX31_RS09255at 49.768 kb on - strand, within EX31_RS09255at 49.883 kb on - strand, within EX31_RS09255at 49.888 kb on - strand, within EX31_RS09255at 49.892 kb on - strand, within EX31_RS09255at 49.950 kb on + strand, within EX31_RS09255at 49.951 kb on - strand, within EX31_RS09255at 49.951 kb on - strand, within EX31_RS09255at 49.951 kb on - strand, within EX31_RS09255at 49.951 kb on - strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.981 kb on + strand, within EX31_RS09255at 50.115 kb on - strand, within EX31_RS09255at 50.139 kb on + strand, within EX31_RS09255at 50.140 kb on - strand, within EX31_RS09255at 50.140 kb on - strand, within EX31_RS09255at 50.140 kb on - strand, within EX31_RS09255at 50.140 kb on - strand, within EX31_RS09255at 50.148 kb on + strand, within EX31_RS09255at 50.171 kb on - strand, within EX31_RS09255at 50.390 kb on - strand, within EX31_RS09255at 50.522 kb on - strand, within EX31_RS09255at 50.621 kb on - strandat 50.661 kb on + strandat 50.661 kb on + strandat 50.661 kb on + strandat 50.661 kb on + strandat 50.662 kb on - strandat 50.737 kb on + strandat 50.797 kb on - strandat 50.836 kb on - strandat 50.960 kb on - strandat 51.024 kb on + strand, within EX31_RS09260at 51.024 kb on + strand, within EX31_RS09260at 51.080 kb on - strand, within EX31_RS09260at 51.356 kb on + strand, within EX31_RS09260at 51.602 kb on - strand, within EX31_RS09260at 51.602 kb on - strand, within EX31_RS09260at 51.718 kb on - strand, within EX31_RS09260at 51.718 kb on - strand, within EX31_RS09260at 51.718 kb on - strand, within EX31_RS09260at 51.718 kb on - strand, within EX31_RS09260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
remove
48,433 + EX31_RS09250 0.31 -0.8
48,461 + EX31_RS09250 0.34 -1.2
48,462 - EX31_RS09250 0.34 +1.2
48,552 + EX31_RS09250 0.44 -1.2
48,553 - EX31_RS09250 0.44 +0.7
48,553 - EX31_RS09250 0.44 +3.4
48,553 - EX31_RS09250 0.44 -0.3
48,570 + EX31_RS09250 0.45 -1.2
48,809 - EX31_RS09250 0.71 -2.2
48,809 - EX31_RS09250 0.71 +1.2
48,830 + EX31_RS09250 0.74 +1.0
48,959 + EX31_RS09250 0.88 +0.2
48,960 - EX31_RS09250 0.88 -0.4
49,071 + +4.2
49,071 + -2.3
49,071 + +2.2
49,137 + -0.8
49,167 + -1.4
49,220 - -0.0
49,220 - -2.7
49,363 - -2.2
49,437 + EX31_RS09255 0.14 -1.4
49,437 + EX31_RS09255 0.14 -1.4
49,438 - EX31_RS09255 0.14 +0.7
49,440 + EX31_RS09255 0.15 -0.4
49,440 + EX31_RS09255 0.15 +1.6
49,440 + EX31_RS09255 0.15 +4.0
49,441 - EX31_RS09255 0.15 -2.7
49,450 + EX31_RS09255 0.15 -1.6
49,451 - EX31_RS09255 0.15 -1.2
49,451 - EX31_RS09255 0.15 -0.6
49,452 + EX31_RS09255 0.15 -0.4
49,453 - EX31_RS09255 0.15 -0.4
49,539 + EX31_RS09255 0.21 -1.4
49,676 - EX31_RS09255 0.30 +1.2
49,766 - EX31_RS09255 0.36 +1.7
49,766 - EX31_RS09255 0.36 +1.2
49,767 + EX31_RS09255 0.36 -1.8
49,767 + EX31_RS09255 0.36 +1.8
49,767 + EX31_RS09255 0.36 -1.4
49,767 + EX31_RS09255 0.36 -2.0
49,767 + EX31_RS09255 0.36 +2.7
49,767 + EX31_RS09255 0.36 -0.8
49,767 + EX31_RS09255 0.36 -1.6
49,767 + EX31_RS09255 0.36 +0.6
49,768 - EX31_RS09255 0.36 -0.4
49,768 - EX31_RS09255 0.36 +3.0
49,768 - EX31_RS09255 0.36 +1.0
49,768 - EX31_RS09255 0.36 +3.3
49,883 - EX31_RS09255 0.43 -1.6
49,888 - EX31_RS09255 0.44 +5.1
49,892 - EX31_RS09255 0.44 -1.4
49,950 + EX31_RS09255 0.48 -0.8
49,951 - EX31_RS09255 0.48 -0.8
49,951 - EX31_RS09255 0.48 -1.4
49,951 - EX31_RS09255 0.48 +1.2
49,951 - EX31_RS09255 0.48 -2.0
49,959 + EX31_RS09255 0.48 +1.2
49,959 + EX31_RS09255 0.48 -1.8
49,959 + EX31_RS09255 0.48 +1.2
49,959 + EX31_RS09255 0.48 -0.0
49,959 + EX31_RS09255 0.48 -1.4
49,960 - EX31_RS09255 0.48 +0.2
49,960 - EX31_RS09255 0.48 +1.2
49,960 - EX31_RS09255 0.48 +1.2
49,960 - EX31_RS09255 0.48 -2.2
49,960 - EX31_RS09255 0.48 -0.4
49,981 + EX31_RS09255 0.50 -1.6
50,115 - EX31_RS09255 0.58 +1.9
50,139 + EX31_RS09255 0.60 +0.8
50,140 - EX31_RS09255 0.60 -0.4
50,140 - EX31_RS09255 0.60 -0.1
50,140 - EX31_RS09255 0.60 +0.2
50,140 - EX31_RS09255 0.60 +0.2
50,148 + EX31_RS09255 0.60 +0.6
50,171 - EX31_RS09255 0.62 -0.8
50,390 - EX31_RS09255 0.76 -1.8
50,522 - EX31_RS09255 0.85 -1.4
50,621 - +0.2
50,661 + -0.8
50,661 + -0.8
50,661 + +0.7
50,661 + +0.2
50,662 - -0.8
50,737 + +1.0
50,797 - +0.2
50,836 - -2.0
50,960 - +2.2
51,024 + EX31_RS09260 0.12 -0.8
51,024 + EX31_RS09260 0.12 -1.4
51,080 - EX31_RS09260 0.15 -1.2
51,356 + EX31_RS09260 0.30 -0.4
51,602 - EX31_RS09260 0.43 +5.0
51,602 - EX31_RS09260 0.43 +1.2
51,718 - EX31_RS09260 0.49 +3.0
51,718 - EX31_RS09260 0.49 +0.2
51,718 - EX31_RS09260 0.49 +0.8
51,718 - EX31_RS09260 0.49 -2.6

Or see this region's nucleotide sequence