Strain Fitness in Rahnella sp. WP5 around EX31_RS09190

Experiment: NLDM_metabolites (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS09180 and EX31_RS09185 are separated by 17 nucleotidesEX31_RS09185 and EX31_RS09190 are separated by 1 nucleotidesEX31_RS09190 and EX31_RS09195 are separated by 30 nucleotides EX31_RS09180: EX31_RS09180 - ABC transporter substrate-binding protein, at 32,653 to 34,170 _RS09180 EX31_RS09185: EX31_RS09185 - ABC transporter permease, at 34,188 to 35,132 _RS09185 EX31_RS09190: EX31_RS09190 - ABC transporter permease, at 35,134 to 36,009 _RS09190 EX31_RS09195: EX31_RS09195 - gamma-glutamyltransferase family protein, at 36,040 to 37,647 _RS09195 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2 3at 34.168 kb on + strandat 34.168 kb on + strandat 34.169 kb on - strandat 34.169 kb on - strandat 34.193 kb on - strandat 34.193 kb on - strandat 34.351 kb on - strand, within EX31_RS09185at 34.450 kb on + strand, within EX31_RS09185at 34.451 kb on - strand, within EX31_RS09185at 34.643 kb on + strand, within EX31_RS09185at 34.643 kb on + strand, within EX31_RS09185at 34.643 kb on + strand, within EX31_RS09185at 34.686 kb on + strand, within EX31_RS09185at 34.686 kb on + strand, within EX31_RS09185at 34.821 kb on + strand, within EX31_RS09185at 34.822 kb on - strand, within EX31_RS09185at 34.822 kb on - strand, within EX31_RS09185at 34.822 kb on - strand, within EX31_RS09185at 35.022 kb on + strand, within EX31_RS09185at 35.097 kb on + strandat 35.098 kb on - strandat 35.098 kb on - strandat 35.473 kb on - strand, within EX31_RS09190at 35.683 kb on + strand, within EX31_RS09190at 35.683 kb on + strand, within EX31_RS09190at 35.684 kb on - strand, within EX31_RS09190at 35.685 kb on + strand, within EX31_RS09190at 35.685 kb on + strand, within EX31_RS09190at 35.738 kb on - strand, within EX31_RS09190at 35.738 kb on - strand, within EX31_RS09190at 35.802 kb on + strand, within EX31_RS09190at 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.053 kb on - strandat 36.328 kb on + strand, within EX31_RS09195at 36.364 kb on + strand, within EX31_RS09195at 36.364 kb on + strand, within EX31_RS09195at 36.365 kb on - strand, within EX31_RS09195at 36.365 kb on - strand, within EX31_RS09195at 36.636 kb on - strand, within EX31_RS09195at 36.636 kb on - strand, within EX31_RS09195at 36.978 kb on + strand, within EX31_RS09195at 36.978 kb on + strand, within EX31_RS09195at 36.978 kb on + strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
remove
34,168 + +0.6
34,168 + -2.2
34,169 - -0.4
34,169 - -1.4
34,193 - -0.4
34,193 - -1.4
34,351 - EX31_RS09185 0.17 +1.2
34,450 + EX31_RS09185 0.28 +2.1
34,451 - EX31_RS09185 0.28 +1.2
34,643 + EX31_RS09185 0.48 +0.9
34,643 + EX31_RS09185 0.48 -0.4
34,643 + EX31_RS09185 0.48 +1.2
34,686 + EX31_RS09185 0.53 +1.3
34,686 + EX31_RS09185 0.53 -1.6
34,821 + EX31_RS09185 0.67 -0.4
34,822 - EX31_RS09185 0.67 +0.2
34,822 - EX31_RS09185 0.67 -2.0
34,822 - EX31_RS09185 0.67 +1.0
35,022 + EX31_RS09185 0.88 +1.0
35,097 + -1.2
35,098 - +1.4
35,098 - +2.6
35,473 - EX31_RS09190 0.39 -0.8
35,683 + EX31_RS09190 0.63 +0.8
35,683 + EX31_RS09190 0.63 -0.4
35,684 - EX31_RS09190 0.63 -0.4
35,685 + EX31_RS09190 0.63 -1.8
35,685 + EX31_RS09190 0.63 -0.8
35,738 - EX31_RS09190 0.69 -0.4
35,738 - EX31_RS09190 0.69 -1.8
35,802 + EX31_RS09190 0.76 -2.6
36,037 + -1.6
36,037 + +3.5
36,037 + +2.4
36,037 + -0.1
36,037 + +1.4
36,037 + -1.6
36,037 + +0.2
36,037 + +2.7
36,037 + -0.8
36,038 - -2.3
36,038 - -1.2
36,038 - +1.2
36,038 - +2.5
36,038 - +1.2
36,053 - -1.4
36,328 + EX31_RS09195 0.18 +2.5
36,364 + EX31_RS09195 0.20 -0.5
36,364 + EX31_RS09195 0.20 -1.6
36,365 - EX31_RS09195 0.20 +0.5
36,365 - EX31_RS09195 0.20 -1.2
36,636 - EX31_RS09195 0.37 +0.5
36,636 - EX31_RS09195 0.37 -0.4
36,978 + EX31_RS09195 0.58 -1.8
36,978 + EX31_RS09195 0.58 -1.2
36,978 + EX31_RS09195 0.58 -1.4
36,979 - EX31_RS09195 0.58 -0.8
36,979 - EX31_RS09195 0.58 +0.2
36,979 - EX31_RS09195 0.58 -1.4
36,979 - EX31_RS09195 0.58 -1.2

Or see this region's nucleotide sequence