Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08740 and EX31_RS08745 are separated by 87 nucleotides EX31_RS08745 and EX31_RS08750 are separated by 39 nucleotides EX31_RS08750 and EX31_RS25265 are separated by 4 nucleotides EX31_RS25265 and EX31_RS08755 are separated by 5 nucleotides EX31_RS08755 and EX31_RS08760 are separated by 150 nucleotides
EX31_RS08740: EX31_RS08740 - opacity-associated protein OapA, at 258,101 to 258,811
_RS08740
EX31_RS08745: EX31_RS08745 - 50S ribosomal protein L9, at 258,899 to 259,351
_RS08745
EX31_RS08750: EX31_RS08750 - 30S ribosomal protein S18, at 259,391 to 259,618
_RS08750
EX31_RS25265: EX31_RS25265 - primosomal replication protein N, at 259,623 to 259,940
_RS25265
EX31_RS08755: EX31_RS08755 - 30S ribosomal protein S6, at 259,946 to 260,338
_RS08755
EX31_RS08760: EX31_RS08760 - esterase, at 260,489 to 261,238
_RS08760
Position (kb) 259
260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 258.393 kb on + strand, within EX31_RS08740 at 258.393 kb on + strand, within EX31_RS08740 at 258.393 kb on + strand, within EX31_RS08740 at 258.394 kb on - strand, within EX31_RS08740 at 258.404 kb on + strand, within EX31_RS08740 at 258.404 kb on + strand, within EX31_RS08740 at 258.404 kb on + strand, within EX31_RS08740 at 258.404 kb on + strand, within EX31_RS08740 at 258.404 kb on + strand, within EX31_RS08740 at 258.405 kb on - strand, within EX31_RS08740 at 258.405 kb on - strand, within EX31_RS08740 at 258.406 kb on + strand, within EX31_RS08740 at 258.406 kb on + strand, within EX31_RS08740 at 258.407 kb on - strand, within EX31_RS08740 at 258.407 kb on - strand, within EX31_RS08740 at 258.422 kb on + strand, within EX31_RS08740 at 258.422 kb on + strand, within EX31_RS08740 at 258.422 kb on + strand, within EX31_RS08740 at 258.422 kb on + strand, within EX31_RS08740 at 258.423 kb on - strand, within EX31_RS08740 at 258.423 kb on - strand, within EX31_RS08740 at 258.423 kb on - strand, within EX31_RS08740 at 258.423 kb on - strand, within EX31_RS08740 at 258.455 kb on - strand, within EX31_RS08740 at 258.535 kb on + strand, within EX31_RS08740 at 258.536 kb on - strand, within EX31_RS08740 at 258.563 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.610 kb on + strand, within EX31_RS08740 at 258.611 kb on - strand, within EX31_RS08740 at 258.611 kb on - strand, within EX31_RS08740 at 258.611 kb on - strand, within EX31_RS08740 at 258.613 kb on + strand, within EX31_RS08740 at 258.614 kb on - strand, within EX31_RS08740 at 258.614 kb on - strand, within EX31_RS08740 at 258.622 kb on - strand, within EX31_RS08740 at 258.630 kb on + strand, within EX31_RS08740 at 258.648 kb on + strand, within EX31_RS08740 at 258.648 kb on + strand, within EX31_RS08740 at 258.673 kb on + strand, within EX31_RS08740 at 258.673 kb on + strand, within EX31_RS08740 at 258.674 kb on - strand, within EX31_RS08740 at 258.674 kb on - strand, within EX31_RS08740 at 258.702 kb on + strand, within EX31_RS08740 at 258.702 kb on + strand, within EX31_RS08740 at 258.702 kb on + strand, within EX31_RS08740 at 258.702 kb on + strand, within EX31_RS08740 at 258.702 kb on + strand, within EX31_RS08740 at 258.702 kb on + strand, within EX31_RS08740 at 258.703 kb on - strand, within EX31_RS08740 at 258.760 kb on + strand at 258.773 kb on - strand at 258.806 kb on - strand at 258.821 kb on + strand at 258.821 kb on + strand at 258.886 kb on - strand at 258.921 kb on - strand at 258.921 kb on - strand at 258.921 kb on - strand at 258.921 kb on - strand at 258.921 kb on - strand at 258.939 kb on - strand at 259.019 kb on - strand, within EX31_RS08745 at 259.019 kb on - strand, within EX31_RS08745 at 259.073 kb on - strand, within EX31_RS08745 at 259.119 kb on - strand, within EX31_RS08745 at 259.378 kb on - strand at 259.378 kb on - strand at 260.481 kb on + strand at 260.490 kb on + strand at 260.545 kb on + strand at 260.545 kb on + strand at 260.545 kb on + strand at 260.545 kb on + strand at 260.546 kb on - strand at 260.546 kb on - strand at 260.546 kb on - strand at 260.569 kb on + strand, within EX31_RS08760 at 260.570 kb on - strand, within EX31_RS08760 at 260.581 kb on + strand, within EX31_RS08760
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 258,393 + EX31_RS08740 0.41 +0.4 258,393 + EX31_RS08740 0.41 +0.4 258,393 + EX31_RS08740 0.41 -0.4 258,394 - EX31_RS08740 0.41 +3.2 258,404 + EX31_RS08740 0.43 -0.6 258,404 + EX31_RS08740 0.43 -2.1 258,404 + EX31_RS08740 0.43 +1.5 258,404 + EX31_RS08740 0.43 -3.0 258,404 + EX31_RS08740 0.43 +0.6 258,405 - EX31_RS08740 0.43 -0.4 258,405 - EX31_RS08740 0.43 +1.1 258,406 + EX31_RS08740 0.43 +0.4 258,406 + EX31_RS08740 0.43 -1.4 258,407 - EX31_RS08740 0.43 -0.7 258,407 - EX31_RS08740 0.43 -2.1 258,422 + EX31_RS08740 0.45 -0.1 258,422 + EX31_RS08740 0.45 +1.5 258,422 + EX31_RS08740 0.45 -0.4 258,422 + EX31_RS08740 0.45 -1.4 258,423 - EX31_RS08740 0.45 +1.1 258,423 - EX31_RS08740 0.45 -1.7 258,423 - EX31_RS08740 0.45 +0.6 258,423 - EX31_RS08740 0.45 -0.4 258,455 - EX31_RS08740 0.50 -1.0 258,535 + EX31_RS08740 0.61 -2.2 258,536 - EX31_RS08740 0.61 -1.4 258,563 + EX31_RS08740 0.65 +0.3 258,610 + EX31_RS08740 0.72 +0.8 258,610 + EX31_RS08740 0.72 +2.1 258,610 + EX31_RS08740 0.72 -1.4 258,610 + EX31_RS08740 0.72 -0.6 258,610 + EX31_RS08740 0.72 +1.7 258,610 + EX31_RS08740 0.72 -0.6 258,610 + EX31_RS08740 0.72 +1.6 258,610 + EX31_RS08740 0.72 +0.3 258,610 + EX31_RS08740 0.72 +1.5 258,610 + EX31_RS08740 0.72 +2.7 258,611 - EX31_RS08740 0.72 -0.7 258,611 - EX31_RS08740 0.72 -0.4 258,611 - EX31_RS08740 0.72 +1.5 258,613 + EX31_RS08740 0.72 +0.7 258,614 - EX31_RS08740 0.72 +1.1 258,614 - EX31_RS08740 0.72 +1.6 258,622 - EX31_RS08740 0.73 -2.6 258,630 + EX31_RS08740 0.74 -0.1 258,648 + EX31_RS08740 0.77 +0.6 258,648 + EX31_RS08740 0.77 -2.9 258,673 + EX31_RS08740 0.80 -0.0 258,673 + EX31_RS08740 0.80 +0.2 258,674 - EX31_RS08740 0.81 -0.3 258,674 - EX31_RS08740 0.81 +1.9 258,702 + EX31_RS08740 0.85 +0.8 258,702 + EX31_RS08740 0.85 -0.1 258,702 + EX31_RS08740 0.85 +1.6 258,702 + EX31_RS08740 0.85 -2.4 258,702 + EX31_RS08740 0.85 -0.8 258,702 + EX31_RS08740 0.85 +0.2 258,703 - EX31_RS08740 0.85 +2.4 258,760 + -0.4 258,773 - +0.4 258,806 - -1.2 258,821 + +0.9 258,821 + -2.7 258,886 - -2.7 258,921 - -0.7 258,921 - +1.9 258,921 - -2.1 258,921 - +0.6 258,921 - -1.4 258,939 - -0.7 259,019 - EX31_RS08745 0.26 -1.2 259,019 - EX31_RS08745 0.26 -0.4 259,073 - EX31_RS08745 0.38 +0.6 259,119 - EX31_RS08745 0.49 -1.9 259,378 - +0.1 259,378 - -0.4 260,481 + -1.5 260,490 + -1.2 260,545 + +0.1 260,545 + +0.5 260,545 + -1.7 260,545 + -1.8 260,546 - +1.0 260,546 - +1.5 260,546 - +0.1 260,569 + EX31_RS08760 0.11 +1.4 260,570 - EX31_RS08760 0.11 -1.1 260,581 + EX31_RS08760 0.12 -0.4
Or see this region's nucleotide sequence