Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08650 and EX31_RS08655 are separated by 450 nucleotides EX31_RS08655 and EX31_RS08660 are separated by 201 nucleotides EX31_RS08660 and EX31_RS08665 are separated by 298 nucleotides
EX31_RS08650: EX31_RS08650 - transcriptional regulator ArgR, at 236,685 to 237,155
_RS08650
EX31_RS08655: EX31_RS08655 - peroxide/acid stress response protein YhcN, at 237,606 to 237,869
_RS08655
EX31_RS08660: EX31_RS08660 - peroxide/acid stress response protein YhcN, at 238,071 to 238,334
_RS08660
EX31_RS08665: EX31_RS08665 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 238,633 to 240,018
_RS08665
Position (kb) 237
238 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 236.639 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.661 kb on - strand at 236.661 kb on - strand at 236.861 kb on + strand, within EX31_RS08650 at 236.883 kb on + strand, within EX31_RS08650 at 236.883 kb on + strand, within EX31_RS08650 at 237.071 kb on + strand, within EX31_RS08650 at 237.071 kb on + strand, within EX31_RS08650 at 237.153 kb on + strand at 237.213 kb on - strand at 237.213 kb on - strand at 237.213 kb on - strand at 237.213 kb on - strand at 237.250 kb on + strand at 237.250 kb on + strand at 237.312 kb on - strand at 237.340 kb on - strand at 237.340 kb on - strand at 237.368 kb on + strand at 237.448 kb on + strand at 237.539 kb on + strand at 237.539 kb on + strand at 237.539 kb on + strand at 237.539 kb on + strand at 237.539 kb on + strand at 237.540 kb on - strand at 237.540 kb on - strand at 237.540 kb on - strand at 237.540 kb on - strand at 237.540 kb on - strand at 237.541 kb on + strand at 237.541 kb on + strand at 237.541 kb on + strand at 237.581 kb on + strand at 237.585 kb on - strand at 237.585 kb on - strand at 237.614 kb on + strand at 237.614 kb on + strand at 237.615 kb on - strand at 237.620 kb on + strand at 237.620 kb on + strand at 237.621 kb on - strand at 237.634 kb on + strand, within EX31_RS08655 at 237.634 kb on + strand, within EX31_RS08655 at 237.634 kb on + strand, within EX31_RS08655 at 237.634 kb on + strand, within EX31_RS08655 at 237.634 kb on + strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.683 kb on + strand, within EX31_RS08655 at 237.684 kb on - strand, within EX31_RS08655 at 237.713 kb on + strand, within EX31_RS08655 at 237.713 kb on + strand, within EX31_RS08655 at 237.714 kb on - strand, within EX31_RS08655 at 237.714 kb on - strand, within EX31_RS08655 at 237.714 kb on - strand, within EX31_RS08655 at 237.779 kb on + strand, within EX31_RS08655 at 237.779 kb on + strand, within EX31_RS08655 at 237.780 kb on - strand, within EX31_RS08655 at 237.780 kb on - strand, within EX31_RS08655 at 237.800 kb on + strand, within EX31_RS08655 at 237.801 kb on - strand, within EX31_RS08655 at 237.836 kb on + strand, within EX31_RS08655 at 237.836 kb on + strand, within EX31_RS08655 at 237.836 kb on + strand, within EX31_RS08655 at 237.836 kb on + strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.840 kb on + strand, within EX31_RS08655 at 237.840 kb on + strand, within EX31_RS08655 at 237.841 kb on - strand, within EX31_RS08655 at 237.841 kb on - strand, within EX31_RS08655 at 237.841 kb on - strand, within EX31_RS08655 at 237.867 kb on + strand at 237.867 kb on + strand at 237.951 kb on + strand at 237.951 kb on + strand at 237.951 kb on + strand at 237.951 kb on + strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.969 kb on - strand at 237.987 kb on + strand at 237.988 kb on - strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.991 kb on - strand at 237.991 kb on - strand at 237.991 kb on - strand at 237.991 kb on - strand at 238.001 kb on + strand at 238.002 kb on - strand at 238.079 kb on + strand at 238.080 kb on - strand at 238.080 kb on - strand at 238.082 kb on + strand at 238.083 kb on - strand at 238.088 kb on + strand at 238.088 kb on + strand at 238.088 kb on + strand at 238.089 kb on - strand at 238.089 kb on - strand at 238.100 kb on + strand, within EX31_RS08660 at 238.100 kb on + strand, within EX31_RS08660 at 238.100 kb on + strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660 at 238.244 kb on + strand, within EX31_RS08660 at 238.244 kb on + strand, within EX31_RS08660 at 238.326 kb on + strand at 238.332 kb on + strand at 238.345 kb on + strand at 238.358 kb on + strand at 238.488 kb on + strand at 238.563 kb on + strand at 238.564 kb on - strand at 238.564 kb on - strand at 238.612 kb on - strand at 238.612 kb on - strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.690 kb on + strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.691 kb on - strand at 238.692 kb on + strand at 238.692 kb on + strand at 238.693 kb on - strand at 238.693 kb on - strand at 238.693 kb on - strand at 238.725 kb on + strand at 238.726 kb on - strand at 238.726 kb on - strand at 238.726 kb on - strand at 238.759 kb on - strand at 238.803 kb on + strand, within EX31_RS08665 at 238.803 kb on + strand, within EX31_RS08665 at 238.803 kb on + strand, within EX31_RS08665 at 238.803 kb on + strand, within EX31_RS08665 at 238.803 kb on + strand, within EX31_RS08665 at 238.803 kb on + strand, within EX31_RS08665 at 238.803 kb on + strand, within EX31_RS08665 at 238.803 kb on + strand, within EX31_RS08665 at 238.804 kb on - strand, within EX31_RS08665 at 238.839 kb on + strand, within EX31_RS08665 at 238.839 kb on + strand, within EX31_RS08665 at 238.839 kb on + strand, within EX31_RS08665 at 238.839 kb on + strand, within EX31_RS08665 at 238.839 kb on + strand, within EX31_RS08665 at 238.840 kb on - strand, within EX31_RS08665 at 238.840 kb on - strand, within EX31_RS08665 at 238.840 kb on - strand, within EX31_RS08665 at 238.840 kb on - strand, within EX31_RS08665 at 238.853 kb on - strand, within EX31_RS08665 at 238.853 kb on - strand, within EX31_RS08665 at 238.853 kb on - strand, within EX31_RS08665 at 238.853 kb on - strand, within EX31_RS08665
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 236,639 + +1.3 236,660 + +1.3 236,660 + +1.8 236,660 + +2.6 236,660 + +0.3 236,660 + +0.3 236,660 + -1.8 236,660 + -3.5 236,660 + +0.5 236,660 + +1.4 236,660 + -2.4 236,661 - +0.1 236,661 - -2.3 236,861 + EX31_RS08650 0.37 -3.4 236,883 + EX31_RS08650 0.42 -3.2 236,883 + EX31_RS08650 0.42 -0.7 237,071 + EX31_RS08650 0.82 -1.2 237,071 + EX31_RS08650 0.82 +0.3 237,153 + -0.7 237,213 - -0.1 237,213 - +0.9 237,213 - +1.6 237,213 - -1.2 237,250 + -0.2 237,250 + +1.7 237,312 - -2.3 237,340 - +0.6 237,340 - +1.3 237,368 + +0.6 237,448 + -2.1 237,539 + +1.6 237,539 + -0.2 237,539 + -1.7 237,539 + +1.6 237,539 + +4.0 237,540 - +2.2 237,540 - +1.0 237,540 - +0.5 237,540 - +1.8 237,540 - +1.2 237,541 + -0.7 237,541 + +0.8 237,541 + +2.1 237,581 + -0.3 237,585 - -0.9 237,585 - +1.6 237,614 + +0.1 237,614 + -1.5 237,615 - +0.8 237,620 + +0.3 237,620 + -1.2 237,621 - +0.1 237,634 + EX31_RS08655 0.11 +1.5 237,634 + EX31_RS08655 0.11 +1.1 237,634 + EX31_RS08655 0.11 -2.4 237,634 + EX31_RS08655 0.11 -1.9 237,634 + EX31_RS08655 0.11 +1.1 237,635 - EX31_RS08655 0.11 +0.7 237,635 - EX31_RS08655 0.11 -0.2 237,635 - EX31_RS08655 0.11 +1.3 237,635 - EX31_RS08655 0.11 +0.1 237,635 - EX31_RS08655 0.11 +0.7 237,635 - EX31_RS08655 0.11 +0.9 237,683 + EX31_RS08655 0.29 -2.4 237,684 - EX31_RS08655 0.30 +0.9 237,713 + EX31_RS08655 0.41 +1.2 237,713 + EX31_RS08655 0.41 +1.0 237,714 - EX31_RS08655 0.41 -4.2 237,714 - EX31_RS08655 0.41 -1.8 237,714 - EX31_RS08655 0.41 +2.0 237,779 + EX31_RS08655 0.66 +1.3 237,779 + EX31_RS08655 0.66 -2.0 237,780 - EX31_RS08655 0.66 +0.3 237,780 - EX31_RS08655 0.66 -2.9 237,800 + EX31_RS08655 0.73 +0.1 237,801 - EX31_RS08655 0.74 +0.6 237,836 + EX31_RS08655 0.87 -2.5 237,836 + EX31_RS08655 0.87 +1.7 237,836 + EX31_RS08655 0.87 -0.7 237,836 + EX31_RS08655 0.87 -0.9 237,837 - EX31_RS08655 0.88 +1.7 237,837 - EX31_RS08655 0.88 +3.4 237,837 - EX31_RS08655 0.88 -0.2 237,837 - EX31_RS08655 0.88 +0.6 237,837 - EX31_RS08655 0.88 +0.3 237,837 - EX31_RS08655 0.88 +0.0 237,840 + EX31_RS08655 0.89 -1.2 237,840 + EX31_RS08655 0.89 +0.1 237,841 - EX31_RS08655 0.89 +2.6 237,841 - EX31_RS08655 0.89 -0.5 237,841 - EX31_RS08655 0.89 +1.8 237,867 + +1.1 237,867 + -0.1 237,951 + +0.3 237,951 + -3.0 237,951 + -2.4 237,951 + -0.7 237,952 - +3.4 237,952 - -1.4 237,952 - -0.9 237,952 - +4.5 237,952 - +1.1 237,952 - -0.4 237,952 - -0.7 237,969 - +0.5 237,987 + +0.9 237,988 - -2.8 237,990 + +1.9 237,990 + +0.2 237,990 + -1.7 237,990 + +0.6 237,990 + -1.2 237,990 + +1.4 237,990 + -0.4 237,990 + -2.5 237,991 - -2.6 237,991 - -2.3 237,991 - +1.1 237,991 - +1.6 238,001 + +2.1 238,002 - -2.7 238,079 + -1.2 238,080 - +0.4 238,080 - +0.4 238,082 + -0.9 238,083 - -0.2 238,088 + +1.6 238,088 + +0.8 238,088 + -0.7 238,089 - +1.4 238,089 - +0.6 238,100 + EX31_RS08660 0.11 +1.2 238,100 + EX31_RS08660 0.11 -2.9 238,100 + EX31_RS08660 0.11 +0.3 238,101 - EX31_RS08660 0.11 -0.9 238,101 - EX31_RS08660 0.11 +0.5 238,101 - EX31_RS08660 0.11 -1.5 238,101 - EX31_RS08660 0.11 -2.8 238,101 - EX31_RS08660 0.11 +2.2 238,244 + EX31_RS08660 0.66 +0.1 238,244 + EX31_RS08660 0.66 -2.9 238,326 + -1.7 238,332 + -2.1 238,345 + +1.4 238,358 + +1.1 238,488 + +0.8 238,563 + -1.2 238,564 - -0.7 238,564 - +0.7 238,612 - -0.3 238,612 - -2.1 238,690 + +0.0 238,690 + -1.4 238,690 + -2.1 238,690 + -0.1 238,690 + +0.4 238,690 + +0.2 238,690 + +1.3 238,690 + +2.4 238,690 + +1.1 238,690 + +1.6 238,690 + -2.1 238,690 + -1.8 238,690 + +1.1 238,690 + +1.5 238,690 + -0.1 238,691 - -0.1 238,691 - -0.7 238,691 - +0.4 238,691 - +0.5 238,691 - -2.4 238,691 - +1.1 238,691 - +0.4 238,691 - -0.4 238,691 - +0.4 238,691 - +1.8 238,691 - -0.4 238,691 - +0.0 238,691 - -1.9 238,691 - -0.4 238,691 - -1.4 238,691 - -1.7 238,691 - +0.3 238,691 - -0.9 238,691 - -0.4 238,691 - +0.6 238,691 - -0.4 238,691 - +1.7 238,691 - +0.6 238,692 + +1.7 238,692 + -0.2 238,693 - +0.5 238,693 - -0.1 238,693 - -2.7 238,725 + -0.7 238,726 - +1.5 238,726 - +0.2 238,726 - +1.5 238,759 - +2.9 238,803 + EX31_RS08665 0.12 +1.7 238,803 + EX31_RS08665 0.12 +1.2 238,803 + EX31_RS08665 0.12 +1.1 238,803 + EX31_RS08665 0.12 +1.2 238,803 + EX31_RS08665 0.12 -0.2 238,803 + EX31_RS08665 0.12 -2.3 238,803 + EX31_RS08665 0.12 +0.8 238,803 + EX31_RS08665 0.12 -0.9 238,804 - EX31_RS08665 0.12 +0.7 238,839 + EX31_RS08665 0.15 +2.2 238,839 + EX31_RS08665 0.15 -0.0 238,839 + EX31_RS08665 0.15 -1.7 238,839 + EX31_RS08665 0.15 -1.8 238,839 + EX31_RS08665 0.15 -0.5 238,840 - EX31_RS08665 0.15 -1.1 238,840 - EX31_RS08665 0.15 +1.9 238,840 - EX31_RS08665 0.15 +0.5 238,840 - EX31_RS08665 0.15 -1.7 238,853 - EX31_RS08665 0.16 -1.9 238,853 - EX31_RS08665 0.16 -1.3 238,853 - EX31_RS08665 0.16 -1.5 238,853 - EX31_RS08665 0.16 -0.7
Or see this region's nucleotide sequence