Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08645 and EX31_RS08650 are separated by 463 nucleotides EX31_RS08650 and EX31_RS08655 are separated by 450 nucleotides EX31_RS08655 and EX31_RS08660 are separated by 201 nucleotides
EX31_RS08645: EX31_RS08645 - malate dehydrogenase, at 235,283 to 236,221
_RS08645
EX31_RS08650: EX31_RS08650 - transcriptional regulator ArgR, at 236,685 to 237,155
_RS08650
EX31_RS08655: EX31_RS08655 - peroxide/acid stress response protein YhcN, at 237,606 to 237,869
_RS08655
EX31_RS08660: EX31_RS08660 - peroxide/acid stress response protein YhcN, at 238,071 to 238,334
_RS08660
Position (kb) 236
237
238 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 235.718 kb on - strand, within EX31_RS08645 at 235.733 kb on - strand, within EX31_RS08645 at 235.810 kb on - strand, within EX31_RS08645 at 235.855 kb on + strand, within EX31_RS08645 at 235.856 kb on - strand, within EX31_RS08645 at 235.874 kb on - strand, within EX31_RS08645 at 235.874 kb on - strand, within EX31_RS08645 at 235.876 kb on + strand, within EX31_RS08645 at 235.876 kb on + strand, within EX31_RS08645 at 235.877 kb on - strand, within EX31_RS08645 at 235.877 kb on - strand, within EX31_RS08645 at 235.901 kb on - strand, within EX31_RS08645 at 235.949 kb on - strand, within EX31_RS08645 at 235.979 kb on - strand, within EX31_RS08645 at 236.033 kb on - strand, within EX31_RS08645 at 236.078 kb on - strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.126 kb on + strand, within EX31_RS08645 at 236.126 kb on + strand, within EX31_RS08645 at 236.127 kb on - strand, within EX31_RS08645 at 236.127 kb on - strand, within EX31_RS08645 at 236.127 kb on - strand, within EX31_RS08645 at 236.127 kb on - strand, within EX31_RS08645 at 236.151 kb on - strand at 236.204 kb on + strand at 236.251 kb on - strand at 236.288 kb on + strand at 236.289 kb on - strand at 236.289 kb on - strand at 236.289 kb on - strand at 236.289 kb on - strand at 236.360 kb on + strand at 236.361 kb on - strand at 236.361 kb on - strand at 236.361 kb on - strand at 236.361 kb on - strand at 236.361 kb on - strand at 236.361 kb on - strand at 236.382 kb on - strand at 236.411 kb on + strand at 236.412 kb on - strand at 236.417 kb on + strand at 236.417 kb on + strand at 236.443 kb on + strand at 236.443 kb on + strand at 236.443 kb on + strand at 236.444 kb on - strand at 236.493 kb on + strand at 236.493 kb on + strand at 236.493 kb on + strand at 236.493 kb on + strand at 236.494 kb on - strand at 236.494 kb on - strand at 236.494 kb on - strand at 236.541 kb on - strand at 236.541 kb on - strand at 236.559 kb on - strand at 236.573 kb on + strand at 236.574 kb on - strand at 236.574 kb on - strand at 236.574 kb on - strand at 236.593 kb on + strand at 236.594 kb on - strand at 236.594 kb on - strand at 236.594 kb on - strand at 236.594 kb on - strand at 236.594 kb on - strand at 236.639 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.660 kb on + strand at 236.661 kb on - strand at 236.661 kb on - strand at 236.861 kb on + strand, within EX31_RS08650 at 236.883 kb on + strand, within EX31_RS08650 at 236.883 kb on + strand, within EX31_RS08650 at 237.071 kb on + strand, within EX31_RS08650 at 237.071 kb on + strand, within EX31_RS08650 at 237.153 kb on + strand at 237.213 kb on - strand at 237.213 kb on - strand at 237.213 kb on - strand at 237.213 kb on - strand at 237.250 kb on + strand at 237.250 kb on + strand at 237.312 kb on - strand at 237.340 kb on - strand at 237.340 kb on - strand at 237.368 kb on + strand at 237.448 kb on + strand at 237.539 kb on + strand at 237.539 kb on + strand at 237.539 kb on + strand at 237.539 kb on + strand at 237.539 kb on + strand at 237.540 kb on - strand at 237.540 kb on - strand at 237.540 kb on - strand at 237.540 kb on - strand at 237.540 kb on - strand at 237.541 kb on + strand at 237.541 kb on + strand at 237.541 kb on + strand at 237.581 kb on + strand at 237.585 kb on - strand at 237.585 kb on - strand at 237.614 kb on + strand at 237.614 kb on + strand at 237.615 kb on - strand at 237.620 kb on + strand at 237.620 kb on + strand at 237.621 kb on - strand at 237.634 kb on + strand, within EX31_RS08655 at 237.634 kb on + strand, within EX31_RS08655 at 237.634 kb on + strand, within EX31_RS08655 at 237.634 kb on + strand, within EX31_RS08655 at 237.634 kb on + strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.635 kb on - strand, within EX31_RS08655 at 237.683 kb on + strand, within EX31_RS08655 at 237.684 kb on - strand, within EX31_RS08655 at 237.713 kb on + strand, within EX31_RS08655 at 237.713 kb on + strand, within EX31_RS08655 at 237.714 kb on - strand, within EX31_RS08655 at 237.714 kb on - strand, within EX31_RS08655 at 237.714 kb on - strand, within EX31_RS08655 at 237.779 kb on + strand, within EX31_RS08655 at 237.779 kb on + strand, within EX31_RS08655 at 237.780 kb on - strand, within EX31_RS08655 at 237.780 kb on - strand, within EX31_RS08655 at 237.800 kb on + strand, within EX31_RS08655 at 237.801 kb on - strand, within EX31_RS08655 at 237.836 kb on + strand, within EX31_RS08655 at 237.836 kb on + strand, within EX31_RS08655 at 237.836 kb on + strand, within EX31_RS08655 at 237.836 kb on + strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.837 kb on - strand, within EX31_RS08655 at 237.840 kb on + strand, within EX31_RS08655 at 237.840 kb on + strand, within EX31_RS08655 at 237.841 kb on - strand, within EX31_RS08655 at 237.841 kb on - strand, within EX31_RS08655 at 237.841 kb on - strand, within EX31_RS08655 at 237.867 kb on + strand at 237.867 kb on + strand at 237.951 kb on + strand at 237.951 kb on + strand at 237.951 kb on + strand at 237.951 kb on + strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.952 kb on - strand at 237.969 kb on - strand at 237.987 kb on + strand at 237.988 kb on - strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.990 kb on + strand at 237.991 kb on - strand at 237.991 kb on - strand at 237.991 kb on - strand at 237.991 kb on - strand at 238.001 kb on + strand at 238.002 kb on - strand at 238.079 kb on + strand at 238.080 kb on - strand at 238.080 kb on - strand at 238.082 kb on + strand at 238.083 kb on - strand at 238.088 kb on + strand at 238.088 kb on + strand at 238.088 kb on + strand at 238.089 kb on - strand at 238.089 kb on - strand at 238.100 kb on + strand, within EX31_RS08660 at 238.100 kb on + strand, within EX31_RS08660 at 238.100 kb on + strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660 at 238.101 kb on - strand, within EX31_RS08660
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 235,718 - EX31_RS08645 0.46 +1.6 235,733 - EX31_RS08645 0.48 +1.6 235,810 - EX31_RS08645 0.56 +0.4 235,855 + EX31_RS08645 0.61 -0.9 235,856 - EX31_RS08645 0.61 +1.5 235,874 - EX31_RS08645 0.63 -2.9 235,874 - EX31_RS08645 0.63 +0.4 235,876 + EX31_RS08645 0.63 +1.1 235,876 + EX31_RS08645 0.63 +1.5 235,877 - EX31_RS08645 0.63 +2.0 235,877 - EX31_RS08645 0.63 +0.6 235,901 - EX31_RS08645 0.66 +1.0 235,949 - EX31_RS08645 0.71 -0.7 235,979 - EX31_RS08645 0.74 +2.9 236,033 - EX31_RS08645 0.80 +1.6 236,078 - EX31_RS08645 0.85 +0.8 236,124 + EX31_RS08645 0.90 +0.6 236,124 + EX31_RS08645 0.90 +0.1 236,124 + EX31_RS08645 0.90 +0.5 236,124 + EX31_RS08645 0.90 +2.9 236,124 + EX31_RS08645 0.90 -0.5 236,124 + EX31_RS08645 0.90 -1.1 236,125 - EX31_RS08645 0.90 +0.6 236,125 - EX31_RS08645 0.90 -0.9 236,125 - EX31_RS08645 0.90 -2.4 236,125 - EX31_RS08645 0.90 +0.9 236,125 - EX31_RS08645 0.90 +2.4 236,125 - EX31_RS08645 0.90 +1.1 236,125 - EX31_RS08645 0.90 -1.1 236,125 - EX31_RS08645 0.90 +0.9 236,125 - EX31_RS08645 0.90 -0.3 236,126 + EX31_RS08645 0.90 -1.5 236,126 + EX31_RS08645 0.90 +3.0 236,127 - EX31_RS08645 0.90 -0.4 236,127 - EX31_RS08645 0.90 +1.0 236,127 - EX31_RS08645 0.90 +1.7 236,127 - EX31_RS08645 0.90 +0.6 236,151 - -1.0 236,204 + +2.1 236,251 - -2.9 236,288 + -2.4 236,289 - -2.4 236,289 - -0.4 236,289 - -2.6 236,289 - +0.2 236,360 + +0.1 236,361 - -0.9 236,361 - -0.3 236,361 - +0.6 236,361 - +0.1 236,361 - +1.0 236,361 - +0.6 236,382 - -1.2 236,411 + +0.1 236,412 - -0.7 236,417 + +0.9 236,417 + +0.2 236,443 + +0.7 236,443 + +0.1 236,443 + +1.1 236,444 - +1.4 236,493 + -0.2 236,493 + -0.7 236,493 + +0.8 236,493 + +0.4 236,494 - +2.1 236,494 - -0.2 236,494 - -0.0 236,541 - +1.4 236,541 - -0.2 236,559 - +0.8 236,573 + +1.2 236,574 - +0.7 236,574 - +0.5 236,574 - +0.1 236,593 + -2.4 236,594 - +1.1 236,594 - -3.3 236,594 - -0.4 236,594 - -1.5 236,594 - -3.2 236,639 + +1.3 236,660 + +1.3 236,660 + +1.8 236,660 + +2.6 236,660 + +0.3 236,660 + +0.3 236,660 + -1.8 236,660 + -3.5 236,660 + +0.5 236,660 + +1.4 236,660 + -2.4 236,661 - +0.1 236,661 - -2.3 236,861 + EX31_RS08650 0.37 -3.4 236,883 + EX31_RS08650 0.42 -3.2 236,883 + EX31_RS08650 0.42 -0.7 237,071 + EX31_RS08650 0.82 -1.2 237,071 + EX31_RS08650 0.82 +0.3 237,153 + -0.7 237,213 - -0.1 237,213 - +0.9 237,213 - +1.6 237,213 - -1.2 237,250 + -0.2 237,250 + +1.7 237,312 - -2.3 237,340 - +0.6 237,340 - +1.3 237,368 + +0.6 237,448 + -2.1 237,539 + +1.6 237,539 + -0.2 237,539 + -1.7 237,539 + +1.6 237,539 + +4.0 237,540 - +2.2 237,540 - +1.0 237,540 - +0.5 237,540 - +1.8 237,540 - +1.2 237,541 + -0.7 237,541 + +0.8 237,541 + +2.1 237,581 + -0.3 237,585 - -0.9 237,585 - +1.6 237,614 + +0.1 237,614 + -1.5 237,615 - +0.8 237,620 + +0.3 237,620 + -1.2 237,621 - +0.1 237,634 + EX31_RS08655 0.11 +1.5 237,634 + EX31_RS08655 0.11 +1.1 237,634 + EX31_RS08655 0.11 -2.4 237,634 + EX31_RS08655 0.11 -1.9 237,634 + EX31_RS08655 0.11 +1.1 237,635 - EX31_RS08655 0.11 +0.7 237,635 - EX31_RS08655 0.11 -0.2 237,635 - EX31_RS08655 0.11 +1.3 237,635 - EX31_RS08655 0.11 +0.1 237,635 - EX31_RS08655 0.11 +0.7 237,635 - EX31_RS08655 0.11 +0.9 237,683 + EX31_RS08655 0.29 -2.4 237,684 - EX31_RS08655 0.30 +0.9 237,713 + EX31_RS08655 0.41 +1.2 237,713 + EX31_RS08655 0.41 +1.0 237,714 - EX31_RS08655 0.41 -4.2 237,714 - EX31_RS08655 0.41 -1.8 237,714 - EX31_RS08655 0.41 +2.0 237,779 + EX31_RS08655 0.66 +1.3 237,779 + EX31_RS08655 0.66 -2.0 237,780 - EX31_RS08655 0.66 +0.3 237,780 - EX31_RS08655 0.66 -2.9 237,800 + EX31_RS08655 0.73 +0.1 237,801 - EX31_RS08655 0.74 +0.6 237,836 + EX31_RS08655 0.87 -2.5 237,836 + EX31_RS08655 0.87 +1.7 237,836 + EX31_RS08655 0.87 -0.7 237,836 + EX31_RS08655 0.87 -0.9 237,837 - EX31_RS08655 0.88 +1.7 237,837 - EX31_RS08655 0.88 +3.4 237,837 - EX31_RS08655 0.88 -0.2 237,837 - EX31_RS08655 0.88 +0.6 237,837 - EX31_RS08655 0.88 +0.3 237,837 - EX31_RS08655 0.88 +0.0 237,840 + EX31_RS08655 0.89 -1.2 237,840 + EX31_RS08655 0.89 +0.1 237,841 - EX31_RS08655 0.89 +2.6 237,841 - EX31_RS08655 0.89 -0.5 237,841 - EX31_RS08655 0.89 +1.8 237,867 + +1.1 237,867 + -0.1 237,951 + +0.3 237,951 + -3.0 237,951 + -2.4 237,951 + -0.7 237,952 - +3.4 237,952 - -1.4 237,952 - -0.9 237,952 - +4.5 237,952 - +1.1 237,952 - -0.4 237,952 - -0.7 237,969 - +0.5 237,987 + +0.9 237,988 - -2.8 237,990 + +1.9 237,990 + +0.2 237,990 + -1.7 237,990 + +0.6 237,990 + -1.2 237,990 + +1.4 237,990 + -0.4 237,990 + -2.5 237,991 - -2.6 237,991 - -2.3 237,991 - +1.1 237,991 - +1.6 238,001 + +2.1 238,002 - -2.7 238,079 + -1.2 238,080 - +0.4 238,080 - +0.4 238,082 + -0.9 238,083 - -0.2 238,088 + +1.6 238,088 + +0.8 238,088 + -0.7 238,089 - +1.4 238,089 - +0.6 238,100 + EX31_RS08660 0.11 +1.2 238,100 + EX31_RS08660 0.11 -2.9 238,100 + EX31_RS08660 0.11 +0.3 238,101 - EX31_RS08660 0.11 -0.9 238,101 - EX31_RS08660 0.11 +0.5 238,101 - EX31_RS08660 0.11 -1.5 238,101 - EX31_RS08660 0.11 -2.8 238,101 - EX31_RS08660 0.11 +2.2
Or see this region's nucleotide sequence