Strain Fitness in Rahnella sp. WP5 around EX31_RS08385

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS08380 and EX31_RS08385 are separated by 152 nucleotidesEX31_RS08385 and EX31_RS08390 are separated by 22 nucleotides EX31_RS08380: EX31_RS08380 - HTH-type transcriptional regulator TreR, at 182,122 to 183,078 _RS08380 EX31_RS08385: EX31_RS08385 - PTS trehalose transporter subunit IIBC, at 183,231 to 184,649 _RS08385 EX31_RS08390: EX31_RS08390 - alpha,alpha-phosphotrehalase, at 184,672 to 186,315 _RS08390 Position (kb) 183 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 182.370 kb on - strand, within EX31_RS08380at 182.370 kb on - strand, within EX31_RS08380at 182.392 kb on + strand, within EX31_RS08380at 182.404 kb on + strand, within EX31_RS08380at 182.404 kb on + strand, within EX31_RS08380at 182.404 kb on + strand, within EX31_RS08380at 182.404 kb on + strand, within EX31_RS08380at 182.405 kb on - strand, within EX31_RS08380at 182.405 kb on - strand, within EX31_RS08380at 182.405 kb on - strand, within EX31_RS08380at 182.405 kb on - strand, within EX31_RS08380at 182.481 kb on + strand, within EX31_RS08380at 182.582 kb on + strand, within EX31_RS08380at 182.596 kb on + strand, within EX31_RS08380at 182.667 kb on + strand, within EX31_RS08380at 182.733 kb on + strand, within EX31_RS08380at 182.780 kb on - strand, within EX31_RS08380at 182.780 kb on - strand, within EX31_RS08380at 182.780 kb on - strand, within EX31_RS08380at 182.780 kb on - strand, within EX31_RS08380at 182.780 kb on - strand, within EX31_RS08380at 182.875 kb on + strand, within EX31_RS08380at 182.910 kb on - strand, within EX31_RS08380at 182.959 kb on + strand, within EX31_RS08380at 182.966 kb on + strand, within EX31_RS08380at 183.054 kb on + strandat 183.054 kb on + strandat 183.054 kb on + strandat 183.181 kb on - strandat 183.181 kb on - strandat 183.194 kb on - strandat 183.194 kb on - strandat 183.198 kb on + strandat 183.198 kb on + strandat 183.198 kb on + strandat 183.199 kb on - strandat 183.199 kb on - strandat 183.199 kb on - strandat 183.199 kb on - strandat 183.199 kb on - strandat 183.207 kb on - strandat 183.242 kb on + strandat 183.242 kb on + strandat 183.243 kb on - strandat 183.243 kb on - strandat 183.243 kb on - strandat 183.293 kb on + strandat 183.293 kb on + strandat 183.294 kb on - strandat 183.318 kb on - strandat 183.318 kb on - strandat 183.318 kb on - strandat 183.450 kb on + strand, within EX31_RS08385at 183.450 kb on + strand, within EX31_RS08385at 183.451 kb on - strand, within EX31_RS08385at 183.451 kb on - strand, within EX31_RS08385at 183.451 kb on - strand, within EX31_RS08385at 183.451 kb on - strand, within EX31_RS08385at 183.451 kb on - strand, within EX31_RS08385at 183.451 kb on - strand, within EX31_RS08385at 183.451 kb on - strand, within EX31_RS08385at 183.453 kb on + strand, within EX31_RS08385at 183.453 kb on + strand, within EX31_RS08385at 183.453 kb on + strand, within EX31_RS08385at 183.453 kb on + strand, within EX31_RS08385at 183.453 kb on + strand, within EX31_RS08385at 183.527 kb on + strand, within EX31_RS08385at 183.527 kb on + strand, within EX31_RS08385at 183.607 kb on + strand, within EX31_RS08385at 183.607 kb on + strand, within EX31_RS08385at 183.696 kb on + strand, within EX31_RS08385at 183.697 kb on - strand, within EX31_RS08385at 183.697 kb on - strand, within EX31_RS08385at 183.697 kb on - strand, within EX31_RS08385at 183.731 kb on + strand, within EX31_RS08385at 183.731 kb on + strand, within EX31_RS08385at 183.732 kb on - strand, within EX31_RS08385at 183.732 kb on - strand, within EX31_RS08385at 183.732 kb on - strand, within EX31_RS08385at 183.811 kb on + strand, within EX31_RS08385at 183.811 kb on + strand, within EX31_RS08385at 183.843 kb on + strand, within EX31_RS08385at 183.843 kb on + strand, within EX31_RS08385at 183.843 kb on + strand, within EX31_RS08385at 183.843 kb on + strand, within EX31_RS08385at 183.843 kb on + strand, within EX31_RS08385at 183.843 kb on + strand, within EX31_RS08385at 183.843 kb on + strand, within EX31_RS08385at 183.844 kb on - strand, within EX31_RS08385at 183.844 kb on - strand, within EX31_RS08385at 183.844 kb on - strand, within EX31_RS08385at 183.872 kb on - strand, within EX31_RS08385at 183.909 kb on + strand, within EX31_RS08385at 183.989 kb on + strand, within EX31_RS08385at 183.989 kb on + strand, within EX31_RS08385at 183.989 kb on + strand, within EX31_RS08385at 183.989 kb on + strand, within EX31_RS08385at 183.989 kb on + strand, within EX31_RS08385at 183.990 kb on - strand, within EX31_RS08385at 183.990 kb on - strand, within EX31_RS08385at 183.990 kb on - strand, within EX31_RS08385at 183.990 kb on - strand, within EX31_RS08385at 183.990 kb on - strand, within EX31_RS08385at 183.993 kb on + strand, within EX31_RS08385at 183.993 kb on + strand, within EX31_RS08385at 183.993 kb on + strand, within EX31_RS08385at 183.993 kb on + strand, within EX31_RS08385at 183.994 kb on - strand, within EX31_RS08385at 183.994 kb on - strand, within EX31_RS08385at 183.994 kb on - strand, within EX31_RS08385at 183.994 kb on - strand, within EX31_RS08385at 183.994 kb on - strand, within EX31_RS08385at 183.994 kb on - strand, within EX31_RS08385at 183.994 kb on - strand, within EX31_RS08385at 183.999 kb on + strand, within EX31_RS08385at 184.000 kb on - strand, within EX31_RS08385at 184.032 kb on - strand, within EX31_RS08385at 184.052 kb on + strand, within EX31_RS08385at 184.052 kb on + strand, within EX31_RS08385at 184.052 kb on + strand, within EX31_RS08385at 184.053 kb on - strand, within EX31_RS08385at 184.053 kb on - strand, within EX31_RS08385at 184.275 kb on - strand, within EX31_RS08385at 184.275 kb on - strand, within EX31_RS08385at 184.325 kb on + strand, within EX31_RS08385at 184.325 kb on + strand, within EX31_RS08385at 184.325 kb on + strand, within EX31_RS08385at 184.325 kb on + strand, within EX31_RS08385at 184.325 kb on + strand, within EX31_RS08385at 184.325 kb on + strand, within EX31_RS08385at 184.325 kb on + strand, within EX31_RS08385at 184.326 kb on - strand, within EX31_RS08385at 184.326 kb on - strand, within EX31_RS08385at 184.326 kb on - strand, within EX31_RS08385at 184.326 kb on - strand, within EX31_RS08385at 184.326 kb on - strand, within EX31_RS08385at 184.326 kb on - strand, within EX31_RS08385at 184.392 kb on + strand, within EX31_RS08385at 184.393 kb on - strand, within EX31_RS08385at 184.410 kb on + strand, within EX31_RS08385at 184.410 kb on + strand, within EX31_RS08385at 184.518 kb on - strandat 184.547 kb on + strandat 184.548 kb on - strandat 184.551 kb on + strandat 184.551 kb on + strandat 184.551 kb on + strandat 184.551 kb on + strandat 184.551 kb on + strandat 184.551 kb on + strandat 184.551 kb on + strandat 184.551 kb on + strandat 184.552 kb on - strandat 184.552 kb on - strandat 184.552 kb on - strandat 184.609 kb on - strandat 184.647 kb on + strandat 184.776 kb on + strandat 184.776 kb on + strandat 184.776 kb on + strandat 184.776 kb on + strandat 184.776 kb on + strandat 184.777 kb on - strandat 184.880 kb on - strand, within EX31_RS08390at 184.901 kb on - strand, within EX31_RS08390at 184.971 kb on + strand, within EX31_RS08390at 184.980 kb on + strand, within EX31_RS08390at 184.986 kb on + strand, within EX31_RS08390at 184.986 kb on + strand, within EX31_RS08390at 184.986 kb on + strand, within EX31_RS08390at 185.050 kb on + strand, within EX31_RS08390at 185.050 kb on + strand, within EX31_RS08390at 185.050 kb on + strand, within EX31_RS08390at 185.050 kb on + strand, within EX31_RS08390at 185.051 kb on - strand, within EX31_RS08390at 185.051 kb on - strand, within EX31_RS08390at 185.051 kb on - strand, within EX31_RS08390at 185.051 kb on - strand, within EX31_RS08390at 185.051 kb on - strand, within EX31_RS08390at 185.051 kb on - strand, within EX31_RS08390at 185.051 kb on - strand, within EX31_RS08390at 185.052 kb on + strand, within EX31_RS08390at 185.149 kb on + strand, within EX31_RS08390at 185.149 kb on + strand, within EX31_RS08390at 185.149 kb on + strand, within EX31_RS08390at 185.150 kb on - strand, within EX31_RS08390at 185.150 kb on - strand, within EX31_RS08390at 185.152 kb on + strand, within EX31_RS08390at 185.153 kb on - strand, within EX31_RS08390at 185.153 kb on - strand, within EX31_RS08390at 185.341 kb on + strand, within EX31_RS08390at 185.393 kb on + strand, within EX31_RS08390at 185.393 kb on + strand, within EX31_RS08390at 185.393 kb on + strand, within EX31_RS08390at 185.393 kb on + strand, within EX31_RS08390at 185.393 kb on + strand, within EX31_RS08390at 185.394 kb on - strand, within EX31_RS08390at 185.394 kb on - strand, within EX31_RS08390at 185.397 kb on + strand, within EX31_RS08390at 185.499 kb on + strand, within EX31_RS08390at 185.640 kb on + strand, within EX31_RS08390at 185.640 kb on + strand, within EX31_RS08390at 185.641 kb on - strand, within EX31_RS08390at 185.641 kb on - strand, within EX31_RS08390

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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182,370 - EX31_RS08380 0.26 +0.8
182,370 - EX31_RS08380 0.26 +1.0
182,392 + EX31_RS08380 0.28 +0.6
182,404 + EX31_RS08380 0.29 -2.3
182,404 + EX31_RS08380 0.29 +0.2
182,404 + EX31_RS08380 0.29 +0.9
182,404 + EX31_RS08380 0.29 +1.9
182,405 - EX31_RS08380 0.30 +2.2
182,405 - EX31_RS08380 0.30 +0.9
182,405 - EX31_RS08380 0.30 +0.0
182,405 - EX31_RS08380 0.30 +1.4
182,481 + EX31_RS08380 0.38 +1.1
182,582 + EX31_RS08380 0.48 +0.1
182,596 + EX31_RS08380 0.50 +0.4
182,667 + EX31_RS08380 0.57 +0.4
182,733 + EX31_RS08380 0.64 +1.9
182,780 - EX31_RS08380 0.69 -0.1
182,780 - EX31_RS08380 0.69 +3.2
182,780 - EX31_RS08380 0.69 +1.4
182,780 - EX31_RS08380 0.69 -0.2
182,780 - EX31_RS08380 0.69 -1.8
182,875 + EX31_RS08380 0.79 +0.1
182,910 - EX31_RS08380 0.82 +0.6
182,959 + EX31_RS08380 0.87 -0.2
182,966 + EX31_RS08380 0.88 -0.4
183,054 + +0.4
183,054 + +0.1
183,054 + +1.0
183,181 - +0.6
183,181 - +1.1
183,194 - +1.1
183,194 - +1.1
183,198 + -1.5
183,198 + +1.6
183,198 + -0.9
183,199 - -0.4
183,199 - -0.3
183,199 - +0.2
183,199 - +1.3
183,199 - +0.9
183,207 - +2.0
183,242 + -0.4
183,242 + -1.7
183,243 - +1.0
183,243 - +4.1
183,243 - +1.1
183,293 + +0.9
183,293 + -0.0
183,294 - +1.1
183,318 - +0.9
183,318 - +1.3
183,318 - +0.1
183,450 + EX31_RS08385 0.15 +1.6
183,450 + EX31_RS08385 0.15 +0.4
183,451 - EX31_RS08385 0.16 +0.4
183,451 - EX31_RS08385 0.16 +0.7
183,451 - EX31_RS08385 0.16 +1.6
183,451 - EX31_RS08385 0.16 +0.7
183,451 - EX31_RS08385 0.16 -0.8
183,451 - EX31_RS08385 0.16 -2.7
183,451 - EX31_RS08385 0.16 +2.6
183,453 + EX31_RS08385 0.16 +2.8
183,453 + EX31_RS08385 0.16 -0.1
183,453 + EX31_RS08385 0.16 -0.7
183,453 + EX31_RS08385 0.16 -0.5
183,453 + EX31_RS08385 0.16 +1.6
183,527 + EX31_RS08385 0.21 +1.5
183,527 + EX31_RS08385 0.21 -1.4
183,607 + EX31_RS08385 0.26 +2.3
183,607 + EX31_RS08385 0.26 -0.9
183,696 + EX31_RS08385 0.33 +1.5
183,697 - EX31_RS08385 0.33 +1.1
183,697 - EX31_RS08385 0.33 +0.8
183,697 - EX31_RS08385 0.33 -1.2
183,731 + EX31_RS08385 0.35 -2.3
183,731 + EX31_RS08385 0.35 +2.0
183,732 - EX31_RS08385 0.35 +1.1
183,732 - EX31_RS08385 0.35 -2.1
183,732 - EX31_RS08385 0.35 +2.5
183,811 + EX31_RS08385 0.41 +3.2
183,811 + EX31_RS08385 0.41 +0.5
183,843 + EX31_RS08385 0.43 +1.4
183,843 + EX31_RS08385 0.43 +2.0
183,843 + EX31_RS08385 0.43 +0.1
183,843 + EX31_RS08385 0.43 +2.2
183,843 + EX31_RS08385 0.43 -2.2
183,843 + EX31_RS08385 0.43 +1.5
183,843 + EX31_RS08385 0.43 +2.6
183,844 - EX31_RS08385 0.43 -1.8
183,844 - EX31_RS08385 0.43 -3.2
183,844 - EX31_RS08385 0.43 -2.1
183,872 - EX31_RS08385 0.45 +3.1
183,909 + EX31_RS08385 0.48 +2.6
183,989 + EX31_RS08385 0.53 -2.1
183,989 + EX31_RS08385 0.53 -0.9
183,989 + EX31_RS08385 0.53 +0.9
183,989 + EX31_RS08385 0.53 +0.2
183,989 + EX31_RS08385 0.53 +2.1
183,990 - EX31_RS08385 0.53 +0.1
183,990 - EX31_RS08385 0.53 -0.8
183,990 - EX31_RS08385 0.53 -0.4
183,990 - EX31_RS08385 0.53 +0.6
183,990 - EX31_RS08385 0.53 +1.9
183,993 + EX31_RS08385 0.54 +0.2
183,993 + EX31_RS08385 0.54 +1.6
183,993 + EX31_RS08385 0.54 +2.2
183,993 + EX31_RS08385 0.54 +2.8
183,994 - EX31_RS08385 0.54 +0.0
183,994 - EX31_RS08385 0.54 +2.2
183,994 - EX31_RS08385 0.54 -0.9
183,994 - EX31_RS08385 0.54 +0.3
183,994 - EX31_RS08385 0.54 +1.6
183,994 - EX31_RS08385 0.54 +1.5
183,994 - EX31_RS08385 0.54 +1.6
183,999 + EX31_RS08385 0.54 -2.4
184,000 - EX31_RS08385 0.54 +0.4
184,032 - EX31_RS08385 0.56 -0.0
184,052 + EX31_RS08385 0.58 -1.0
184,052 + EX31_RS08385 0.58 -0.9
184,052 + EX31_RS08385 0.58 -2.3
184,053 - EX31_RS08385 0.58 -1.7
184,053 - EX31_RS08385 0.58 +2.1
184,275 - EX31_RS08385 0.74 -2.2
184,275 - EX31_RS08385 0.74 -0.5
184,325 + EX31_RS08385 0.77 +0.6
184,325 + EX31_RS08385 0.77 +0.8
184,325 + EX31_RS08385 0.77 +2.5
184,325 + EX31_RS08385 0.77 +2.6
184,325 + EX31_RS08385 0.77 +1.2
184,325 + EX31_RS08385 0.77 +1.9
184,325 + EX31_RS08385 0.77 +1.1
184,326 - EX31_RS08385 0.77 +0.2
184,326 - EX31_RS08385 0.77 -1.7
184,326 - EX31_RS08385 0.77 -1.4
184,326 - EX31_RS08385 0.77 +1.9
184,326 - EX31_RS08385 0.77 +1.2
184,326 - EX31_RS08385 0.77 +0.2
184,392 + EX31_RS08385 0.82 +0.1
184,393 - EX31_RS08385 0.82 -1.4
184,410 + EX31_RS08385 0.83 +2.2
184,410 + EX31_RS08385 0.83 +1.3
184,518 - -1.2
184,547 + -1.2
184,548 - +0.3
184,551 + -1.7
184,551 + +0.8
184,551 + -3.1
184,551 + -0.9
184,551 + -0.5
184,551 + +0.3
184,551 + -0.4
184,551 + -1.5
184,552 - +1.0
184,552 - +3.2
184,552 - +1.4
184,609 - +0.1
184,647 + -1.8
184,776 + -1.2
184,776 + +1.5
184,776 + +1.2
184,776 + -1.5
184,776 + -0.4
184,777 - +0.1
184,880 - EX31_RS08390 0.13 -1.2
184,901 - EX31_RS08390 0.14 +0.1
184,971 + EX31_RS08390 0.18 +1.6
184,980 + EX31_RS08390 0.19 -1.2
184,986 + EX31_RS08390 0.19 +1.6
184,986 + EX31_RS08390 0.19 +0.1
184,986 + EX31_RS08390 0.19 -1.7
185,050 + EX31_RS08390 0.23 -1.7
185,050 + EX31_RS08390 0.23 +1.6
185,050 + EX31_RS08390 0.23 -1.4
185,050 + EX31_RS08390 0.23 +0.6
185,051 - EX31_RS08390 0.23 -0.9
185,051 - EX31_RS08390 0.23 -1.4
185,051 - EX31_RS08390 0.23 -0.4
185,051 - EX31_RS08390 0.23 +0.9
185,051 - EX31_RS08390 0.23 +0.1
185,051 - EX31_RS08390 0.23 +4.0
185,051 - EX31_RS08390 0.23 +1.3
185,052 + EX31_RS08390 0.23 -0.4
185,149 + EX31_RS08390 0.29 -2.6
185,149 + EX31_RS08390 0.29 -0.7
185,149 + EX31_RS08390 0.29 +1.1
185,150 - EX31_RS08390 0.29 -0.4
185,150 - EX31_RS08390 0.29 +3.5
185,152 + EX31_RS08390 0.29 +0.2
185,153 - EX31_RS08390 0.29 +0.1
185,153 - EX31_RS08390 0.29 +0.6
185,341 + EX31_RS08390 0.41 +0.6
185,393 + EX31_RS08390 0.44 -2.3
185,393 + EX31_RS08390 0.44 +0.6
185,393 + EX31_RS08390 0.44 +2.8
185,393 + EX31_RS08390 0.44 -0.4
185,393 + EX31_RS08390 0.44 +1.6
185,394 - EX31_RS08390 0.44 +1.6
185,394 - EX31_RS08390 0.44 +1.6
185,397 + EX31_RS08390 0.44 -1.9
185,499 + EX31_RS08390 0.50 +1.6
185,640 + EX31_RS08390 0.59 +0.6
185,640 + EX31_RS08390 0.59 -0.9
185,641 - EX31_RS08390 0.59 +2.2
185,641 - EX31_RS08390 0.59 +1.8

Or see this region's nucleotide sequence