Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08110 and EX31_RS08115 are separated by 52 nucleotides EX31_RS08115 and EX31_RS08120 are separated by 1 nucleotides EX31_RS08120 and EX31_RS08125 overlap by 4 nucleotides
EX31_RS08110: EX31_RS08110 - glutathionylspermidine synthase family protein, at 113,920 to 115,080
_RS08110
EX31_RS08115: EX31_RS08115 - 4,5-DOPA dioxygenase extradiol, at 115,133 to 115,921
_RS08115
EX31_RS08120: EX31_RS08120 - hypothetical protein, at 115,923 to 116,174
_RS08120
EX31_RS08125: EX31_RS08125 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 116,171 to 116,824
_RS08125
Position (kb) 115
116 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 114.211 kb on + strand, within EX31_RS08110 at 114.211 kb on + strand, within EX31_RS08110 at 114.212 kb on - strand, within EX31_RS08110 at 114.212 kb on - strand, within EX31_RS08110 at 114.232 kb on + strand, within EX31_RS08110 at 114.232 kb on + strand, within EX31_RS08110 at 114.232 kb on + strand, within EX31_RS08110 at 114.232 kb on + strand, within EX31_RS08110 at 114.233 kb on - strand, within EX31_RS08110 at 114.233 kb on - strand, within EX31_RS08110 at 114.292 kb on + strand, within EX31_RS08110 at 114.292 kb on + strand, within EX31_RS08110 at 114.293 kb on - strand, within EX31_RS08110 at 114.318 kb on - strand, within EX31_RS08110 at 114.370 kb on + strand, within EX31_RS08110 at 114.370 kb on + strand, within EX31_RS08110 at 114.371 kb on - strand, within EX31_RS08110 at 114.371 kb on - strand, within EX31_RS08110 at 114.619 kb on + strand, within EX31_RS08110 at 114.778 kb on + strand, within EX31_RS08110 at 114.779 kb on - strand, within EX31_RS08110 at 114.779 kb on - strand, within EX31_RS08110 at 114.814 kb on + strand, within EX31_RS08110 at 114.814 kb on + strand, within EX31_RS08110 at 114.814 kb on + strand, within EX31_RS08110 at 114.814 kb on + strand, within EX31_RS08110 at 114.815 kb on - strand, within EX31_RS08110 at 114.855 kb on + strand, within EX31_RS08110 at 114.855 kb on + strand, within EX31_RS08110 at 114.855 kb on + strand, within EX31_RS08110 at 114.856 kb on - strand, within EX31_RS08110 at 114.902 kb on - strand, within EX31_RS08110 at 114.961 kb on + strand, within EX31_RS08110 at 114.961 kb on + strand, within EX31_RS08110 at 114.961 kb on + strand, within EX31_RS08110 at 114.962 kb on - strand, within EX31_RS08110 at 115.024 kb on - strand at 115.024 kb on - strand at 115.057 kb on + strand at 115.066 kb on - strand at 115.066 kb on - strand at 115.068 kb on + strand at 115.068 kb on + strand at 115.068 kb on + strand at 115.068 kb on + strand at 115.068 kb on + strand at 115.068 kb on + strand at 115.068 kb on + strand at 115.068 kb on + strand at 115.068 kb on + strand at 115.069 kb on - strand at 115.069 kb on - strand at 115.069 kb on - strand at 115.069 kb on - strand at 115.105 kb on - strand at 115.123 kb on - strand at 115.134 kb on + strand at 115.135 kb on - strand at 115.135 kb on - strand at 115.139 kb on + strand at 115.139 kb on + strand at 115.139 kb on + strand at 115.139 kb on + strand at 115.139 kb on + strand at 115.140 kb on - strand at 115.172 kb on + strand at 115.173 kb on - strand at 115.223 kb on + strand, within EX31_RS08115 at 115.224 kb on - strand, within EX31_RS08115 at 115.224 kb on - strand, within EX31_RS08115 at 115.230 kb on + strand, within EX31_RS08115 at 115.231 kb on - strand, within EX31_RS08115 at 115.235 kb on + strand, within EX31_RS08115 at 115.236 kb on - strand, within EX31_RS08115 at 115.236 kb on - strand, within EX31_RS08115 at 115.236 kb on - strand, within EX31_RS08115 at 115.236 kb on - strand, within EX31_RS08115 at 115.236 kb on - strand, within EX31_RS08115 at 115.245 kb on + strand, within EX31_RS08115 at 115.245 kb on + strand, within EX31_RS08115 at 115.245 kb on + strand, within EX31_RS08115 at 115.245 kb on + strand, within EX31_RS08115 at 115.245 kb on + strand, within EX31_RS08115 at 115.245 kb on + strand, within EX31_RS08115 at 115.246 kb on - strand, within EX31_RS08115 at 115.246 kb on - strand, within EX31_RS08115 at 115.339 kb on + strand, within EX31_RS08115 at 115.340 kb on - strand, within EX31_RS08115 at 115.340 kb on - strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.350 kb on + strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.351 kb on - strand, within EX31_RS08115 at 115.404 kb on - strand, within EX31_RS08115 at 115.404 kb on - strand, within EX31_RS08115 at 115.418 kb on - strand, within EX31_RS08115 at 115.424 kb on + strand, within EX31_RS08115 at 115.424 kb on + strand, within EX31_RS08115 at 115.424 kb on + strand, within EX31_RS08115 at 115.424 kb on + strand, within EX31_RS08115 at 115.424 kb on + strand, within EX31_RS08115 at 115.424 kb on + strand, within EX31_RS08115 at 115.424 kb on + strand, within EX31_RS08115 at 115.424 kb on + strand, within EX31_RS08115 at 115.425 kb on - strand, within EX31_RS08115 at 115.425 kb on - strand, within EX31_RS08115 at 115.464 kb on - strand, within EX31_RS08115 at 115.464 kb on - strand, within EX31_RS08115 at 115.464 kb on - strand, within EX31_RS08115 at 115.485 kb on - strand, within EX31_RS08115 at 115.485 kb on - strand, within EX31_RS08115 at 115.491 kb on + strand, within EX31_RS08115 at 115.491 kb on + strand, within EX31_RS08115 at 115.523 kb on - strand, within EX31_RS08115 at 115.523 kb on - strand, within EX31_RS08115 at 115.557 kb on + strand, within EX31_RS08115 at 115.557 kb on + strand, within EX31_RS08115 at 115.557 kb on + strand, within EX31_RS08115 at 115.558 kb on - strand, within EX31_RS08115 at 115.558 kb on - strand, within EX31_RS08115 at 115.609 kb on + strand, within EX31_RS08115 at 115.691 kb on - strand, within EX31_RS08115 at 115.755 kb on - strand, within EX31_RS08115 at 115.846 kb on + strand at 115.846 kb on + strand at 115.847 kb on - strand at 115.848 kb on + strand at 115.848 kb on + strand at 115.848 kb on + strand at 115.848 kb on + strand at 115.848 kb on + strand at 115.848 kb on + strand at 115.848 kb on + strand at 115.849 kb on - strand at 115.849 kb on - strand at 115.849 kb on - strand at 115.849 kb on - strand at 115.849 kb on - strand at 115.849 kb on - strand at 115.849 kb on - strand at 115.906 kb on + strand at 115.906 kb on + strand at 115.906 kb on + strand at 115.906 kb on + strand at 115.906 kb on + strand at 115.906 kb on + strand at 115.906 kb on + strand at 115.906 kb on + strand at 115.906 kb on + strand at 115.907 kb on - strand at 115.907 kb on - strand at 115.907 kb on - strand at 115.907 kb on - strand at 115.907 kb on - strand at 115.943 kb on + strand at 115.944 kb on - strand at 115.944 kb on - strand at 115.944 kb on - strand at 115.985 kb on + strand, within EX31_RS08120 at 115.985 kb on + strand, within EX31_RS08120 at 115.986 kb on - strand, within EX31_RS08120 at 115.986 kb on - strand, within EX31_RS08120 at 115.990 kb on + strand, within EX31_RS08120 at 115.991 kb on - strand, within EX31_RS08120 at 116.021 kb on - strand, within EX31_RS08120 at 116.035 kb on + strand, within EX31_RS08120 at 116.081 kb on + strand, within EX31_RS08120 at 116.082 kb on - strand, within EX31_RS08120 at 116.107 kb on + strand, within EX31_RS08120 at 116.137 kb on + strand, within EX31_RS08120 at 116.138 kb on - strand, within EX31_RS08120 at 116.155 kb on - strand at 116.168 kb on + strand at 116.172 kb on + strand at 116.172 kb on + strand at 116.172 kb on + strand at 116.172 kb on + strand at 116.172 kb on + strand at 116.172 kb on + strand at 116.172 kb on + strand at 116.172 kb on + strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.173 kb on - strand at 116.849 kb on - strand at 116.858 kb on - strand at 116.911 kb on - strand at 116.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 114,211 + EX31_RS08110 0.25 -0.9 114,211 + EX31_RS08110 0.25 +2.0 114,212 - EX31_RS08110 0.25 -1.3 114,212 - EX31_RS08110 0.25 +0.1 114,232 + EX31_RS08110 0.27 -1.2 114,232 + EX31_RS08110 0.27 +0.6 114,232 + EX31_RS08110 0.27 -2.6 114,232 + EX31_RS08110 0.27 +0.6 114,233 - EX31_RS08110 0.27 -0.4 114,233 - EX31_RS08110 0.27 -1.4 114,292 + EX31_RS08110 0.32 -0.4 114,292 + EX31_RS08110 0.32 +0.3 114,293 - EX31_RS08110 0.32 -1.2 114,318 - EX31_RS08110 0.34 -1.9 114,370 + EX31_RS08110 0.39 -1.8 114,370 + EX31_RS08110 0.39 +0.6 114,371 - EX31_RS08110 0.39 +2.8 114,371 - EX31_RS08110 0.39 -1.5 114,619 + EX31_RS08110 0.60 +0.9 114,778 + EX31_RS08110 0.74 -0.7 114,779 - EX31_RS08110 0.74 +1.2 114,779 - EX31_RS08110 0.74 -0.1 114,814 + EX31_RS08110 0.77 -2.7 114,814 + EX31_RS08110 0.77 -1.2 114,814 + EX31_RS08110 0.77 +1.0 114,814 + EX31_RS08110 0.77 +0.6 114,815 - EX31_RS08110 0.77 +0.1 114,855 + EX31_RS08110 0.81 +0.8 114,855 + EX31_RS08110 0.81 +1.8 114,855 + EX31_RS08110 0.81 +2.0 114,856 - EX31_RS08110 0.81 +2.1 114,902 - EX31_RS08110 0.85 +0.3 114,961 + EX31_RS08110 0.90 +0.6 114,961 + EX31_RS08110 0.90 +0.6 114,961 + EX31_RS08110 0.90 -1.7 114,962 - EX31_RS08110 0.90 +3.3 115,024 - -2.1 115,024 - +0.6 115,057 + -2.5 115,066 - +0.5 115,066 - +1.2 115,068 + -0.4 115,068 + -0.2 115,068 + +0.4 115,068 + +2.0 115,068 + +0.6 115,068 + +1.6 115,068 + -0.9 115,068 + +2.2 115,068 + -2.1 115,069 - +2.0 115,069 - +2.1 115,069 - +0.6 115,069 - +1.4 115,105 - -1.7 115,123 - -0.2 115,134 + -0.4 115,135 - +1.1 115,135 - -0.2 115,139 + -2.2 115,139 + +0.9 115,139 + -1.7 115,139 + -0.6 115,139 + +2.4 115,140 - -2.4 115,172 + +0.6 115,173 - +2.0 115,223 + EX31_RS08115 0.11 -0.4 115,224 - EX31_RS08115 0.12 -0.4 115,224 - EX31_RS08115 0.12 -0.4 115,230 + EX31_RS08115 0.12 +0.1 115,231 - EX31_RS08115 0.12 +1.0 115,235 + EX31_RS08115 0.13 -1.7 115,236 - EX31_RS08115 0.13 +1.1 115,236 - EX31_RS08115 0.13 +0.6 115,236 - EX31_RS08115 0.13 +1.6 115,236 - EX31_RS08115 0.13 +0.3 115,236 - EX31_RS08115 0.13 +1.0 115,245 + EX31_RS08115 0.14 +1.6 115,245 + EX31_RS08115 0.14 -1.2 115,245 + EX31_RS08115 0.14 -2.3 115,245 + EX31_RS08115 0.14 -1.5 115,245 + EX31_RS08115 0.14 -1.7 115,245 + EX31_RS08115 0.14 -0.5 115,246 - EX31_RS08115 0.14 -2.9 115,246 - EX31_RS08115 0.14 +1.1 115,339 + EX31_RS08115 0.26 -0.9 115,340 - EX31_RS08115 0.26 -1.2 115,340 - EX31_RS08115 0.26 -1.6 115,350 + EX31_RS08115 0.28 +1.2 115,350 + EX31_RS08115 0.28 +3.4 115,350 + EX31_RS08115 0.28 +1.4 115,350 + EX31_RS08115 0.28 -0.8 115,350 + EX31_RS08115 0.28 +0.8 115,350 + EX31_RS08115 0.28 +0.1 115,350 + EX31_RS08115 0.28 -1.8 115,350 + EX31_RS08115 0.28 +0.9 115,350 + EX31_RS08115 0.28 -1.7 115,350 + EX31_RS08115 0.28 -2.7 115,350 + EX31_RS08115 0.28 -2.1 115,350 + EX31_RS08115 0.28 +2.0 115,350 + EX31_RS08115 0.28 +0.0 115,351 - EX31_RS08115 0.28 +1.2 115,351 - EX31_RS08115 0.28 -1.4 115,351 - EX31_RS08115 0.28 -1.4 115,351 - EX31_RS08115 0.28 +0.8 115,351 - EX31_RS08115 0.28 -2.7 115,351 - EX31_RS08115 0.28 +2.8 115,351 - EX31_RS08115 0.28 +0.4 115,351 - EX31_RS08115 0.28 -0.1 115,351 - EX31_RS08115 0.28 +0.6 115,351 - EX31_RS08115 0.28 -0.5 115,351 - EX31_RS08115 0.28 -3.7 115,351 - EX31_RS08115 0.28 +0.6 115,351 - EX31_RS08115 0.28 +0.6 115,351 - EX31_RS08115 0.28 -1.1 115,351 - EX31_RS08115 0.28 +0.7 115,351 - EX31_RS08115 0.28 -3.1 115,351 - EX31_RS08115 0.28 -1.4 115,351 - EX31_RS08115 0.28 -2.4 115,351 - EX31_RS08115 0.28 -2.6 115,404 - EX31_RS08115 0.34 -0.2 115,404 - EX31_RS08115 0.34 +2.5 115,418 - EX31_RS08115 0.36 -1.7 115,424 + EX31_RS08115 0.37 +1.2 115,424 + EX31_RS08115 0.37 -0.4 115,424 + EX31_RS08115 0.37 +1.8 115,424 + EX31_RS08115 0.37 -0.9 115,424 + EX31_RS08115 0.37 -3.8 115,424 + EX31_RS08115 0.37 +0.8 115,424 + EX31_RS08115 0.37 -1.3 115,424 + EX31_RS08115 0.37 +2.1 115,425 - EX31_RS08115 0.37 +0.9 115,425 - EX31_RS08115 0.37 +0.8 115,464 - EX31_RS08115 0.42 -0.9 115,464 - EX31_RS08115 0.42 -0.1 115,464 - EX31_RS08115 0.42 +1.4 115,485 - EX31_RS08115 0.45 +1.2 115,485 - EX31_RS08115 0.45 -1.8 115,491 + EX31_RS08115 0.45 -3.3 115,491 + EX31_RS08115 0.45 -0.9 115,523 - EX31_RS08115 0.49 -1.5 115,523 - EX31_RS08115 0.49 -1.9 115,557 + EX31_RS08115 0.54 +1.0 115,557 + EX31_RS08115 0.54 -1.4 115,557 + EX31_RS08115 0.54 -1.5 115,558 - EX31_RS08115 0.54 +0.3 115,558 - EX31_RS08115 0.54 -1.2 115,609 + EX31_RS08115 0.60 -0.4 115,691 - EX31_RS08115 0.71 -2.6 115,755 - EX31_RS08115 0.79 +0.4 115,846 + +1.4 115,846 + +2.3 115,847 - -1.4 115,848 + +0.7 115,848 + +1.4 115,848 + -1.4 115,848 + -2.4 115,848 + +0.6 115,848 + -0.4 115,848 + -1.3 115,849 - +0.9 115,849 - -1.7 115,849 - +0.7 115,849 - -2.2 115,849 - +0.8 115,849 - +0.2 115,849 - -2.4 115,906 + -1.2 115,906 + -0.4 115,906 + -2.3 115,906 + +0.8 115,906 + +0.7 115,906 + +0.5 115,906 + -1.1 115,906 + +1.4 115,906 + -0.0 115,907 - +0.6 115,907 - +1.3 115,907 - -0.7 115,907 - -1.0 115,907 - +1.4 115,943 + +1.2 115,944 - +1.0 115,944 - +0.3 115,944 - +1.2 115,985 + EX31_RS08120 0.25 +5.0 115,985 + EX31_RS08120 0.25 +0.8 115,986 - EX31_RS08120 0.25 +0.9 115,986 - EX31_RS08120 0.25 -2.4 115,990 + EX31_RS08120 0.27 +0.1 115,991 - EX31_RS08120 0.27 +0.1 116,021 - EX31_RS08120 0.39 +0.3 116,035 + EX31_RS08120 0.44 +1.4 116,081 + EX31_RS08120 0.63 +0.3 116,082 - EX31_RS08120 0.63 -2.5 116,107 + EX31_RS08120 0.73 +0.2 116,137 + EX31_RS08120 0.85 +1.1 116,138 - EX31_RS08120 0.85 -2.2 116,155 - -0.6 116,168 + +2.6 116,172 + +0.5 116,172 + -1.4 116,172 + +3.2 116,172 + +1.3 116,172 + -0.9 116,172 + -2.7 116,172 + +0.1 116,172 + +0.4 116,173 - -0.7 116,173 - -1.7 116,173 - +0.5 116,173 - +0.6 116,173 - +3.2 116,173 - +3.1 116,173 - -2.4 116,173 - +2.8 116,173 - -1.5 116,173 - +0.3 116,173 - +1.1 116,173 - +0.4 116,173 - -1.6 116,849 - -0.5 116,858 - -3.1 116,911 - -1.5 116,911 - -2.3
Or see this region's nucleotide sequence