Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07740 and EX31_RS07745 are separated by 69 nucleotides EX31_RS07745 and EX31_RS07750 are separated by 157 nucleotides
EX31_RS07740: EX31_RS07740 - HlyC/CorC family transporter, at 29,858 to 31,147
_RS07740
EX31_RS07745: EX31_RS07745 - S-ribosylhomocysteine lyase, at 31,217 to 31,732
_RS07745
EX31_RS07750: EX31_RS07750 - glutamate--cysteine ligase, at 31,890 to 33,461
_RS07750
Position (kb)
31
32 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 30.271 kb on + strand, within EX31_RS07740 at 30.271 kb on + strand, within EX31_RS07740 at 30.271 kb on + strand, within EX31_RS07740 at 30.271 kb on + strand, within EX31_RS07740 at 30.272 kb on - strand, within EX31_RS07740 at 30.272 kb on - strand, within EX31_RS07740 at 30.368 kb on - strand, within EX31_RS07740 at 30.511 kb on + strand, within EX31_RS07740 at 30.547 kb on + strand, within EX31_RS07740 at 30.547 kb on + strand, within EX31_RS07740 at 30.568 kb on + strand, within EX31_RS07740 at 30.568 kb on + strand, within EX31_RS07740 at 30.569 kb on - strand, within EX31_RS07740 at 30.602 kb on - strand, within EX31_RS07740 at 30.612 kb on + strand, within EX31_RS07740 at 30.612 kb on + strand, within EX31_RS07740 at 30.612 kb on + strand, within EX31_RS07740 at 30.612 kb on + strand, within EX31_RS07740 at 30.612 kb on + strand, within EX31_RS07740 at 30.612 kb on + strand, within EX31_RS07740 at 30.612 kb on + strand, within EX31_RS07740 at 30.613 kb on - strand, within EX31_RS07740 at 30.613 kb on - strand, within EX31_RS07740 at 30.629 kb on + strand, within EX31_RS07740 at 30.695 kb on + strand, within EX31_RS07740 at 30.695 kb on + strand, within EX31_RS07740 at 30.695 kb on + strand, within EX31_RS07740 at 30.695 kb on + strand, within EX31_RS07740 at 30.696 kb on - strand, within EX31_RS07740 at 30.696 kb on - strand, within EX31_RS07740 at 30.698 kb on + strand, within EX31_RS07740 at 30.699 kb on - strand, within EX31_RS07740 at 30.700 kb on + strand, within EX31_RS07740 at 30.700 kb on + strand, within EX31_RS07740 at 30.701 kb on - strand, within EX31_RS07740 at 30.735 kb on + strand, within EX31_RS07740 at 30.782 kb on + strand, within EX31_RS07740 at 30.790 kb on + strand, within EX31_RS07740 at 30.903 kb on + strand, within EX31_RS07740 at 30.941 kb on - strand, within EX31_RS07740 at 30.949 kb on + strand, within EX31_RS07740 at 30.949 kb on + strand, within EX31_RS07740 at 30.949 kb on + strand, within EX31_RS07740 at 30.949 kb on + strand, within EX31_RS07740 at 30.982 kb on + strand, within EX31_RS07740 at 31.033 kb on + strand at 31.033 kb on + strand at 31.033 kb on + strand at 31.033 kb on + strand at 31.034 kb on - strand at 31.034 kb on - strand at 31.052 kb on + strand at 31.052 kb on + strand at 31.052 kb on + strand at 31.113 kb on + strand at 31.211 kb on + strand at 31.211 kb on + strand at 31.212 kb on - strand at 31.212 kb on - strand at 31.212 kb on - strand at 31.218 kb on + strand at 31.219 kb on - strand at 31.341 kb on + strand, within EX31_RS07745 at 31.341 kb on + strand, within EX31_RS07745 at 31.341 kb on + strand, within EX31_RS07745 at 31.342 kb on - strand, within EX31_RS07745 at 31.342 kb on - strand, within EX31_RS07745 at 31.356 kb on + strand, within EX31_RS07745 at 31.699 kb on + strand at 31.706 kb on + strand at 31.711 kb on + strand at 31.712 kb on - strand at 31.732 kb on + strand at 31.733 kb on - strand at 31.751 kb on + strand at 31.803 kb on + strand at 31.803 kb on + strand at 31.803 kb on + strand at 31.803 kb on + strand at 31.804 kb on - strand at 31.804 kb on - strand at 31.804 kb on - strand at 31.804 kb on - strand at 31.807 kb on + strand at 31.808 kb on - strand at 31.829 kb on - strand at 31.856 kb on + strand at 31.857 kb on - strand at 31.857 kb on - strand at 31.857 kb on - strand at 31.869 kb on + strand at 31.869 kb on + strand at 31.869 kb on + strand at 31.869 kb on + strand at 31.870 kb on - strand at 31.870 kb on - strand at 31.870 kb on - strand at 31.891 kb on + strand at 31.892 kb on - strand at 31.892 kb on - strand at 31.925 kb on - strand at 31.925 kb on - strand at 31.925 kb on - strand at 31.925 kb on - strand at 31.938 kb on + strand at 31.939 kb on - strand at 31.943 kb on + strand at 31.943 kb on + strand at 31.943 kb on + strand at 31.943 kb on + strand at 31.943 kb on + strand at 31.944 kb on - strand at 31.944 kb on - strand at 31.944 kb on - strand at 31.944 kb on - strand at 32.051 kb on - strand, within EX31_RS07750 at 32.122 kb on + strand, within EX31_RS07750 at 32.123 kb on - strand, within EX31_RS07750 at 32.123 kb on - strand, within EX31_RS07750 at 32.163 kb on - strand, within EX31_RS07750 at 32.177 kb on - strand, within EX31_RS07750 at 32.177 kb on - strand, within EX31_RS07750 at 32.177 kb on - strand, within EX31_RS07750 at 32.277 kb on - strand, within EX31_RS07750 at 32.306 kb on + strand, within EX31_RS07750 at 32.307 kb on - strand, within EX31_RS07750 at 32.345 kb on + strand, within EX31_RS07750 at 32.346 kb on - strand, within EX31_RS07750 at 32.397 kb on + strand, within EX31_RS07750 at 32.398 kb on - strand, within EX31_RS07750 at 32.398 kb on - strand, within EX31_RS07750 at 32.483 kb on + strand, within EX31_RS07750 at 32.483 kb on + strand, within EX31_RS07750 at 32.483 kb on + strand, within EX31_RS07750 at 32.484 kb on - strand, within EX31_RS07750 at 32.484 kb on - strand, within EX31_RS07750 at 32.484 kb on - strand, within EX31_RS07750 at 32.484 kb on - strand, within EX31_RS07750 at 32.584 kb on - strand, within EX31_RS07750 at 32.608 kb on + strand, within EX31_RS07750 at 32.609 kb on - strand, within EX31_RS07750 at 32.609 kb on - strand, within EX31_RS07750 at 32.609 kb on - strand, within EX31_RS07750 at 32.642 kb on - strand, within EX31_RS07750 at 32.642 kb on - strand, within EX31_RS07750 at 32.686 kb on + strand, within EX31_RS07750 at 32.686 kb on + strand, within EX31_RS07750 at 32.686 kb on + strand, within EX31_RS07750 at 32.686 kb on + strand, within EX31_RS07750 at 32.686 kb on + strand, within EX31_RS07750 at 32.687 kb on - strand, within EX31_RS07750 at 32.687 kb on - strand, within EX31_RS07750 at 32.687 kb on - strand, within EX31_RS07750 at 32.687 kb on - strand, within EX31_RS07750 at 32.687 kb on - strand, within EX31_RS07750 at 32.703 kb on - strand, within EX31_RS07750 at 32.703 kb on - strand, within EX31_RS07750 at 32.732 kb on + strand, within EX31_RS07750
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 30,271 + EX31_RS07740 0.32 -4.3 30,271 + EX31_RS07740 0.32 +1.0 30,271 + EX31_RS07740 0.32 -2.2 30,271 + EX31_RS07740 0.32 +1.2 30,272 - EX31_RS07740 0.32 +0.9 30,272 - EX31_RS07740 0.32 -0.9 30,368 - EX31_RS07740 0.40 +1.6 30,511 + EX31_RS07740 0.51 -0.1 30,547 + EX31_RS07740 0.53 +1.4 30,547 + EX31_RS07740 0.53 +1.6 30,568 + EX31_RS07740 0.55 +0.2 30,568 + EX31_RS07740 0.55 -1.1 30,569 - EX31_RS07740 0.55 +1.0 30,602 - EX31_RS07740 0.58 +1.9 30,612 + EX31_RS07740 0.58 -2.7 30,612 + EX31_RS07740 0.58 +1.3 30,612 + EX31_RS07740 0.58 +2.3 30,612 + EX31_RS07740 0.58 -2.4 30,612 + EX31_RS07740 0.58 +3.4 30,612 + EX31_RS07740 0.58 +0.7 30,612 + EX31_RS07740 0.58 -2.1 30,613 - EX31_RS07740 0.59 -1.2 30,613 - EX31_RS07740 0.59 -1.5 30,629 + EX31_RS07740 0.60 -1.1 30,695 + EX31_RS07740 0.65 -1.4 30,695 + EX31_RS07740 0.65 +0.1 30,695 + EX31_RS07740 0.65 +0.6 30,695 + EX31_RS07740 0.65 +1.4 30,696 - EX31_RS07740 0.65 +4.6 30,696 - EX31_RS07740 0.65 +0.8 30,698 + EX31_RS07740 0.65 +1.6 30,699 - EX31_RS07740 0.65 +0.8 30,700 + EX31_RS07740 0.65 +0.8 30,700 + EX31_RS07740 0.65 -1.9 30,701 - EX31_RS07740 0.65 +0.4 30,735 + EX31_RS07740 0.68 -2.5 30,782 + EX31_RS07740 0.72 -0.2 30,790 + EX31_RS07740 0.72 +1.2 30,903 + EX31_RS07740 0.81 +0.6 30,941 - EX31_RS07740 0.84 +0.5 30,949 + EX31_RS07740 0.85 -2.2 30,949 + EX31_RS07740 0.85 -1.2 30,949 + EX31_RS07740 0.85 +4.1 30,949 + EX31_RS07740 0.85 -1.9 30,982 + EX31_RS07740 0.87 -2.7 31,033 + +1.2 31,033 + +0.1 31,033 + -2.1 31,033 + +0.1 31,034 - +1.6 31,034 - +2.5 31,052 + -0.2 31,052 + -1.2 31,052 + +0.1 31,113 + -1.9 31,211 + +1.1 31,211 + +2.4 31,212 - +1.4 31,212 - +0.0 31,212 - -2.8 31,218 + -0.7 31,219 - -2.9 31,341 + EX31_RS07745 0.24 +1.6 31,341 + EX31_RS07745 0.24 -0.9 31,341 + EX31_RS07745 0.24 -2.2 31,342 - EX31_RS07745 0.24 -0.9 31,342 - EX31_RS07745 0.24 -2.7 31,356 + EX31_RS07745 0.27 +0.1 31,699 + +2.6 31,706 + -0.7 31,711 + +1.4 31,712 - +2.5 31,732 + +0.1 31,733 - +0.9 31,751 + +1.0 31,803 + -2.5 31,803 + +1.6 31,803 + -3.2 31,803 + +1.6 31,804 - +0.6 31,804 - -1.2 31,804 - +1.3 31,804 - -3.5 31,807 + +0.3 31,808 - -2.4 31,829 - +2.1 31,856 + -0.9 31,857 - -1.7 31,857 - -0.4 31,857 - -0.9 31,869 + -1.4 31,869 + +1.9 31,869 + +0.8 31,869 + +0.6 31,870 - +0.3 31,870 - -1.5 31,870 - +0.9 31,891 + +0.1 31,892 - +1.7 31,892 - +1.0 31,925 - +0.9 31,925 - +0.2 31,925 - -2.2 31,925 - -3.0 31,938 + +0.9 31,939 - -1.2 31,943 + +1.6 31,943 + +0.6 31,943 + -0.4 31,943 + -0.2 31,943 + +1.1 31,944 - -0.4 31,944 - +0.1 31,944 - +0.6 31,944 - +1.4 32,051 - EX31_RS07750 0.10 +0.6 32,122 + EX31_RS07750 0.15 -1.5 32,123 - EX31_RS07750 0.15 -0.9 32,123 - EX31_RS07750 0.15 +1.6 32,163 - EX31_RS07750 0.17 -0.2 32,177 - EX31_RS07750 0.18 +0.9 32,177 - EX31_RS07750 0.18 +0.1 32,177 - EX31_RS07750 0.18 +1.9 32,277 - EX31_RS07750 0.25 +0.1 32,306 + EX31_RS07750 0.26 -1.7 32,307 - EX31_RS07750 0.27 +1.4 32,345 + EX31_RS07750 0.29 -0.7 32,346 - EX31_RS07750 0.29 +1.8 32,397 + EX31_RS07750 0.32 -2.3 32,398 - EX31_RS07750 0.32 -0.9 32,398 - EX31_RS07750 0.32 -1.7 32,483 + EX31_RS07750 0.38 -0.9 32,483 + EX31_RS07750 0.38 +0.1 32,483 + EX31_RS07750 0.38 +2.8 32,484 - EX31_RS07750 0.38 +0.3 32,484 - EX31_RS07750 0.38 +0.6 32,484 - EX31_RS07750 0.38 +1.1 32,484 - EX31_RS07750 0.38 +3.4 32,584 - EX31_RS07750 0.44 -2.3 32,608 + EX31_RS07750 0.46 -1.8 32,609 - EX31_RS07750 0.46 -1.2 32,609 - EX31_RS07750 0.46 -1.4 32,609 - EX31_RS07750 0.46 -1.3 32,642 - EX31_RS07750 0.48 +0.9 32,642 - EX31_RS07750 0.48 -0.9 32,686 + EX31_RS07750 0.51 +2.4 32,686 + EX31_RS07750 0.51 +2.2 32,686 + EX31_RS07750 0.51 -0.4 32,686 + EX31_RS07750 0.51 +1.5 32,686 + EX31_RS07750 0.51 -0.9 32,687 - EX31_RS07750 0.51 -1.5 32,687 - EX31_RS07750 0.51 +1.8 32,687 - EX31_RS07750 0.51 -2.1 32,687 - EX31_RS07750 0.51 -1.9 32,687 - EX31_RS07750 0.51 -0.9 32,703 - EX31_RS07750 0.52 -1.1 32,703 - EX31_RS07750 0.52 -1.9 32,732 + EX31_RS07750 0.54 +1.6
Or see this region's nucleotide sequence