Strain Fitness in Rahnella sp. WP5 around EX31_RS07610

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07600 and EX31_RS07605 are separated by 132 nucleotidesEX31_RS07605 and EX31_RS07610 overlap by 1 nucleotidesEX31_RS07610 and EX31_RS07615 are separated by 93 nucleotides EX31_RS07600: EX31_RS07600 - hypothetical protein, at 10,159 to 10,749 _RS07600 EX31_RS07605: EX31_RS07605 - DUF5347 family protein, at 10,882 to 11,157 _RS07605 EX31_RS07610: EX31_RS07610 - conjugal transfer protein TraR, at 11,157 to 11,378 _RS07610 EX31_RS07615: EX31_RS07615 - replication endonuclease, at 11,472 to 13,400 _RS07615 Position (kb) 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 10.161 kb on - strandat 10.816 kb on - strandat 10.820 kb on - strandat 10.820 kb on - strandat 10.820 kb on - strandat 10.844 kb on - strandat 10.844 kb on - strandat 10.870 kb on + strandat 10.871 kb on - strandat 10.890 kb on - strandat 10.962 kb on + strand, within EX31_RS07605at 10.963 kb on - strand, within EX31_RS07605at 10.963 kb on - strand, within EX31_RS07605at 10.980 kb on + strand, within EX31_RS07605at 10.980 kb on + strand, within EX31_RS07605at 11.018 kb on + strand, within EX31_RS07605at 11.019 kb on - strand, within EX31_RS07605at 11.050 kb on - strand, within EX31_RS07605at 11.108 kb on + strand, within EX31_RS07605at 11.109 kb on - strand, within EX31_RS07605at 11.139 kb on + strandat 11.139 kb on + strandat 11.139 kb on + strandat 11.152 kb on + strandat 11.216 kb on + strand, within EX31_RS07610at 11.324 kb on + strand, within EX31_RS07610at 11.325 kb on - strand, within EX31_RS07610at 11.541 kb on + strandat 11.686 kb on + strand, within EX31_RS07615at 11.686 kb on + strand, within EX31_RS07615at 11.687 kb on - strand, within EX31_RS07615at 11.687 kb on - strand, within EX31_RS07615at 11.687 kb on - strand, within EX31_RS07615at 11.688 kb on + strand, within EX31_RS07615at 11.689 kb on - strand, within EX31_RS07615at 11.689 kb on - strand, within EX31_RS07615at 11.698 kb on - strand, within EX31_RS07615at 11.699 kb on + strand, within EX31_RS07615at 11.699 kb on + strand, within EX31_RS07615at 11.699 kb on + strand, within EX31_RS07615at 11.699 kb on + strand, within EX31_RS07615at 11.699 kb on + strand, within EX31_RS07615at 11.771 kb on - strand, within EX31_RS07615at 11.780 kb on + strand, within EX31_RS07615at 11.780 kb on + strand, within EX31_RS07615at 11.780 kb on + strand, within EX31_RS07615at 11.781 kb on - strand, within EX31_RS07615at 11.783 kb on + strand, within EX31_RS07615at 11.783 kb on + strand, within EX31_RS07615at 11.783 kb on + strand, within EX31_RS07615at 11.784 kb on - strand, within EX31_RS07615at 11.784 kb on - strand, within EX31_RS07615at 11.791 kb on + strand, within EX31_RS07615at 11.791 kb on + strand, within EX31_RS07615at 11.792 kb on - strand, within EX31_RS07615at 11.792 kb on - strand, within EX31_RS07615at 11.833 kb on + strand, within EX31_RS07615at 11.834 kb on - strand, within EX31_RS07615at 11.855 kb on + strand, within EX31_RS07615at 11.873 kb on + strand, within EX31_RS07615at 11.873 kb on + strand, within EX31_RS07615at 11.874 kb on - strand, within EX31_RS07615at 11.932 kb on - strand, within EX31_RS07615at 11.937 kb on + strand, within EX31_RS07615at 11.937 kb on + strand, within EX31_RS07615at 11.937 kb on + strand, within EX31_RS07615at 11.937 kb on + strand, within EX31_RS07615at 11.938 kb on - strand, within EX31_RS07615at 11.938 kb on - strand, within EX31_RS07615at 11.938 kb on - strand, within EX31_RS07615at 11.938 kb on - strand, within EX31_RS07615at 11.938 kb on - strand, within EX31_RS07615at 11.938 kb on - strand, within EX31_RS07615at 11.938 kb on - strand, within EX31_RS07615at 11.938 kb on - strand, within EX31_RS07615at 12.052 kb on + strand, within EX31_RS07615at 12.052 kb on + strand, within EX31_RS07615at 12.052 kb on + strand, within EX31_RS07615at 12.052 kb on + strand, within EX31_RS07615at 12.052 kb on + strand, within EX31_RS07615at 12.052 kb on + strand, within EX31_RS07615at 12.052 kb on + strand, within EX31_RS07615at 12.053 kb on - strand, within EX31_RS07615at 12.053 kb on - strand, within EX31_RS07615at 12.090 kb on - strand, within EX31_RS07615at 12.090 kb on - strand, within EX31_RS07615at 12.090 kb on - strand, within EX31_RS07615at 12.208 kb on - strand, within EX31_RS07615at 12.208 kb on - strand, within EX31_RS07615at 12.231 kb on + strand, within EX31_RS07615at 12.231 kb on + strand, within EX31_RS07615at 12.232 kb on - strand, within EX31_RS07615at 12.232 kb on - strand, within EX31_RS07615at 12.259 kb on + strand, within EX31_RS07615at 12.259 kb on + strand, within EX31_RS07615at 12.259 kb on + strand, within EX31_RS07615at 12.259 kb on + strand, within EX31_RS07615at 12.259 kb on + strand, within EX31_RS07615at 12.260 kb on - strand, within EX31_RS07615at 12.260 kb on - strand, within EX31_RS07615at 12.260 kb on - strand, within EX31_RS07615at 12.260 kb on - strand, within EX31_RS07615at 12.262 kb on + strand, within EX31_RS07615at 12.262 kb on + strand, within EX31_RS07615at 12.262 kb on + strand, within EX31_RS07615at 12.263 kb on - strand, within EX31_RS07615at 12.263 kb on - strand, within EX31_RS07615at 12.263 kb on - strand, within EX31_RS07615at 12.263 kb on - strand, within EX31_RS07615at 12.263 kb on - strand, within EX31_RS07615at 12.263 kb on - strand, within EX31_RS07615at 12.288 kb on + strand, within EX31_RS07615at 12.289 kb on - strand, within EX31_RS07615at 12.352 kb on + strand, within EX31_RS07615at 12.353 kb on - strand, within EX31_RS07615at 12.353 kb on - strand, within EX31_RS07615at 12.353 kb on - strand, within EX31_RS07615

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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10,161 - -0.2
10,816 - -0.4
10,820 - +1.3
10,820 - +1.5
10,820 - -0.1
10,844 - -0.0
10,844 - -0.7
10,870 + +0.1
10,871 - +0.3
10,890 - +0.8
10,962 + EX31_RS07605 0.29 -0.9
10,963 - EX31_RS07605 0.29 +1.8
10,963 - EX31_RS07605 0.29 +0.1
10,980 + EX31_RS07605 0.36 +0.6
10,980 + EX31_RS07605 0.36 +1.6
11,018 + EX31_RS07605 0.49 -1.4
11,019 - EX31_RS07605 0.50 +1.0
11,050 - EX31_RS07605 0.61 +0.5
11,108 + EX31_RS07605 0.82 -1.5
11,109 - EX31_RS07605 0.82 -1.2
11,139 + -2.8
11,139 + +2.1
11,139 + -0.1
11,152 + -0.6
11,216 + EX31_RS07610 0.27 -1.8
11,324 + EX31_RS07610 0.75 -2.4
11,325 - EX31_RS07610 0.76 -0.2
11,541 + +1.2
11,686 + EX31_RS07615 0.11 -1.8
11,686 + EX31_RS07615 0.11 +2.0
11,687 - EX31_RS07615 0.11 +2.1
11,687 - EX31_RS07615 0.11 +0.6
11,687 - EX31_RS07615 0.11 +1.8
11,688 + EX31_RS07615 0.11 +0.9
11,689 - EX31_RS07615 0.11 +3.4
11,689 - EX31_RS07615 0.11 -0.4
11,698 - EX31_RS07615 0.12 -1.2
11,699 + EX31_RS07615 0.12 +1.1
11,699 + EX31_RS07615 0.12 -1.9
11,699 + EX31_RS07615 0.12 +1.4
11,699 + EX31_RS07615 0.12 -2.5
11,699 + EX31_RS07615 0.12 +0.4
11,771 - EX31_RS07615 0.16 -1.2
11,780 + EX31_RS07615 0.16 +1.2
11,780 + EX31_RS07615 0.16 +0.6
11,780 + EX31_RS07615 0.16 +1.8
11,781 - EX31_RS07615 0.16 +0.8
11,783 + EX31_RS07615 0.16 -2.4
11,783 + EX31_RS07615 0.16 +0.1
11,783 + EX31_RS07615 0.16 +0.3
11,784 - EX31_RS07615 0.16 +1.0
11,784 - EX31_RS07615 0.16 +3.8
11,791 + EX31_RS07615 0.17 -1.9
11,791 + EX31_RS07615 0.17 +2.2
11,792 - EX31_RS07615 0.17 -1.8
11,792 - EX31_RS07615 0.17 +0.9
11,833 + EX31_RS07615 0.19 +1.4
11,834 - EX31_RS07615 0.19 +1.3
11,855 + EX31_RS07615 0.20 -0.4
11,873 + EX31_RS07615 0.21 +1.3
11,873 + EX31_RS07615 0.21 -2.4
11,874 - EX31_RS07615 0.21 -0.5
11,932 - EX31_RS07615 0.24 +1.3
11,937 + EX31_RS07615 0.24 +1.9
11,937 + EX31_RS07615 0.24 -0.7
11,937 + EX31_RS07615 0.24 +1.4
11,937 + EX31_RS07615 0.24 +1.1
11,938 - EX31_RS07615 0.24 -2.1
11,938 - EX31_RS07615 0.24 +0.9
11,938 - EX31_RS07615 0.24 +0.1
11,938 - EX31_RS07615 0.24 -1.9
11,938 - EX31_RS07615 0.24 -2.8
11,938 - EX31_RS07615 0.24 -0.9
11,938 - EX31_RS07615 0.24 +0.1
11,938 - EX31_RS07615 0.24 +0.8
12,052 + EX31_RS07615 0.30 -2.2
12,052 + EX31_RS07615 0.30 +0.0
12,052 + EX31_RS07615 0.30 +1.5
12,052 + EX31_RS07615 0.30 +0.9
12,052 + EX31_RS07615 0.30 +0.9
12,052 + EX31_RS07615 0.30 +1.6
12,052 + EX31_RS07615 0.30 -0.1
12,053 - EX31_RS07615 0.30 -0.2
12,053 - EX31_RS07615 0.30 -1.2
12,090 - EX31_RS07615 0.32 -0.9
12,090 - EX31_RS07615 0.32 +1.9
12,090 - EX31_RS07615 0.32 -2.3
12,208 - EX31_RS07615 0.38 -1.2
12,208 - EX31_RS07615 0.38 +1.6
12,231 + EX31_RS07615 0.39 +0.6
12,231 + EX31_RS07615 0.39 -2.9
12,232 - EX31_RS07615 0.39 -2.2
12,232 - EX31_RS07615 0.39 -2.4
12,259 + EX31_RS07615 0.41 -0.7
12,259 + EX31_RS07615 0.41 -1.6
12,259 + EX31_RS07615 0.41 -2.3
12,259 + EX31_RS07615 0.41 +0.2
12,259 + EX31_RS07615 0.41 +1.6
12,260 - EX31_RS07615 0.41 -1.8
12,260 - EX31_RS07615 0.41 +0.6
12,260 - EX31_RS07615 0.41 +1.7
12,260 - EX31_RS07615 0.41 +0.8
12,262 + EX31_RS07615 0.41 -2.4
12,262 + EX31_RS07615 0.41 +1.3
12,262 + EX31_RS07615 0.41 +0.1
12,263 - EX31_RS07615 0.41 -1.7
12,263 - EX31_RS07615 0.41 +1.3
12,263 - EX31_RS07615 0.41 -1.4
12,263 - EX31_RS07615 0.41 +0.3
12,263 - EX31_RS07615 0.41 -2.9
12,263 - EX31_RS07615 0.41 +1.1
12,288 + EX31_RS07615 0.42 +2.9
12,289 - EX31_RS07615 0.42 -2.2
12,352 + EX31_RS07615 0.46 +0.9
12,353 - EX31_RS07615 0.46 +1.5
12,353 - EX31_RS07615 0.46 +1.2
12,353 - EX31_RS07615 0.46 -1.9

Or see this region's nucleotide sequence