Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07465 and EX31_RS07470 are separated by 25 nucleotides EX31_RS07470 and EX31_RS07475 are separated by 334 nucleotides EX31_RS07475 and EX31_RS07480 are separated by 268 nucleotides
EX31_RS07465: EX31_RS07465 - LysR family transcriptional regulator, at 304,911 to 305,798
_RS07465
EX31_RS07470: EX31_RS07470 - hypothetical protein, at 305,824 to 306,240
_RS07470
EX31_RS07475: EX31_RS07475 - hypothetical protein, at 306,575 to 307,147
_RS07475
EX31_RS07480: EX31_RS07480 - flavocytochrome c, at 307,416 to 310,193
_RS07480
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 305.684 kb on - strand, within EX31_RS07465 at 305.686 kb on + strand, within EX31_RS07465 at 305.720 kb on + strand at 305.845 kb on - strand at 305.904 kb on + strand, within EX31_RS07470 at 306.042 kb on - strand, within EX31_RS07470 at 306.170 kb on - strand, within EX31_RS07470 at 306.242 kb on + strand at 306.655 kb on + strand, within EX31_RS07475 at 306.655 kb on + strand, within EX31_RS07475 at 306.821 kb on - strand, within EX31_RS07475 at 307.084 kb on - strand, within EX31_RS07475 at 307.126 kb on + strand at 307.169 kb on - strand at 307.467 kb on - strand at 307.467 kb on - strand at 307.828 kb on + strand, within EX31_RS07480 at 307.829 kb on - strand, within EX31_RS07480 at 307.945 kb on + strand, within EX31_RS07480
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 305,684 - EX31_RS07465 0.87 +0.5 305,686 + EX31_RS07465 0.87 +0.7 305,720 + -1.8 305,845 - +0.0 305,904 + EX31_RS07470 0.19 -2.2 306,042 - EX31_RS07470 0.52 -0.6 306,170 - EX31_RS07470 0.83 -0.6 306,242 + +3.5 306,655 + EX31_RS07475 0.14 -1.0 306,655 + EX31_RS07475 0.14 +1.0 306,821 - EX31_RS07475 0.43 +0.0 307,084 - EX31_RS07475 0.89 -0.6 307,126 + -1.0 307,169 - -2.2 307,467 - +0.9 307,467 - +1.5 307,828 + EX31_RS07480 0.15 +0.0 307,829 - EX31_RS07480 0.15 +1.1 307,945 + EX31_RS07480 0.19 +1.0
Or see this region's nucleotide sequence