Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07110 and EX31_RS07115 overlap by 8 nucleotides EX31_RS07115 and EX31_RS07120 are separated by 187 nucleotides
EX31_RS07110: EX31_RS07110 - sulfurtransferase, at 213,611 to 215,230
_RS07110
EX31_RS07115: EX31_RS07115 - cysteine dioxygenase, at 215,223 to 215,828
_RS07115
EX31_RS07120: EX31_RS07120 - LysR family transcriptional regulator, at 216,016 to 216,909
_RS07120
Position (kb) 215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 214.255 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.354 kb on - strand, within EX31_RS07110 at 214.355 kb on + strand, within EX31_RS07110 at 214.356 kb on - strand, within EX31_RS07110 at 214.493 kb on - strand, within EX31_RS07110 at 214.583 kb on - strand, within EX31_RS07110 at 214.717 kb on + strand, within EX31_RS07110 at 214.856 kb on - strand, within EX31_RS07110 at 214.876 kb on + strand, within EX31_RS07110 at 214.877 kb on - strand, within EX31_RS07110 at 214.877 kb on - strand, within EX31_RS07110 at 214.880 kb on + strand, within EX31_RS07110 at 214.881 kb on - strand, within EX31_RS07110 at 214.982 kb on - strand, within EX31_RS07110 at 215.023 kb on - strand, within EX31_RS07110 at 215.029 kb on + strand, within EX31_RS07110 at 215.029 kb on + strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.080 kb on + strand at 215.105 kb on + strand at 215.106 kb on - strand at 215.106 kb on - strand at 215.537 kb on + strand, within EX31_RS07115 at 215.538 kb on - strand, within EX31_RS07115 at 215.541 kb on + strand, within EX31_RS07115 at 215.541 kb on + strand, within EX31_RS07115 at 215.542 kb on - strand, within EX31_RS07115 at 215.644 kb on + strand, within EX31_RS07115 at 215.840 kb on + strand at 215.841 kb on - strand at 215.897 kb on + strand at 215.908 kb on + strand at 215.908 kb on + strand at 215.991 kb on - strand at 216.011 kb on + strand at 216.011 kb on + strand at 216.012 kb on - strand at 216.012 kb on - strand at 216.225 kb on + strand, within EX31_RS07120 at 216.225 kb on + strand, within EX31_RS07120 at 216.225 kb on + strand, within EX31_RS07120 at 216.226 kb on - strand, within EX31_RS07120 at 216.408 kb on - strand, within EX31_RS07120 at 216.689 kb on + strand, within EX31_RS07120 at 216.689 kb on + strand, within EX31_RS07120 at 216.690 kb on - strand, within EX31_RS07120 at 216.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 214,255 - EX31_RS07110 0.40 +2.0 214,354 - EX31_RS07110 0.46 +1.0 214,354 - EX31_RS07110 0.46 -0.5 214,354 - EX31_RS07110 0.46 -1.8 214,354 - EX31_RS07110 0.46 +1.0 214,354 - EX31_RS07110 0.46 +1.0 214,354 - EX31_RS07110 0.46 +1.0 214,355 + EX31_RS07110 0.46 +0.0 214,356 - EX31_RS07110 0.46 +0.4 214,493 - EX31_RS07110 0.54 +2.4 214,583 - EX31_RS07110 0.60 -2.3 214,717 + EX31_RS07110 0.68 -1.0 214,856 - EX31_RS07110 0.77 -0.2 214,876 + EX31_RS07110 0.78 -0.6 214,877 - EX31_RS07110 0.78 -1.1 214,877 - EX31_RS07110 0.78 +0.0 214,880 + EX31_RS07110 0.78 +1.0 214,881 - EX31_RS07110 0.78 +1.3 214,982 - EX31_RS07110 0.85 +0.0 215,023 - EX31_RS07110 0.87 +2.9 215,029 + EX31_RS07110 0.88 +0.2 215,029 + EX31_RS07110 0.88 -0.3 215,030 - EX31_RS07110 0.88 +0.3 215,030 - EX31_RS07110 0.88 +0.9 215,030 - EX31_RS07110 0.88 -1.6 215,030 - EX31_RS07110 0.88 -1.3 215,030 - EX31_RS07110 0.88 -2.9 215,030 - EX31_RS07110 0.88 -1.3 215,080 + -1.0 215,105 + -2.3 215,106 - +1.6 215,106 - +1.0 215,537 + EX31_RS07115 0.52 +1.0 215,538 - EX31_RS07115 0.52 +1.0 215,541 + EX31_RS07115 0.52 -0.9 215,541 + EX31_RS07115 0.52 +1.2 215,542 - EX31_RS07115 0.53 -0.6 215,644 + EX31_RS07115 0.69 +2.8 215,840 + -2.5 215,841 - -0.6 215,897 + +1.7 215,908 + -1.0 215,908 + +2.6 215,991 - +2.3 216,011 + +1.7 216,011 + -2.0 216,012 - +0.0 216,012 - +0.0 216,225 + EX31_RS07120 0.23 +0.7 216,225 + EX31_RS07120 0.23 +1.0 216,225 + EX31_RS07120 0.23 +0.3 216,226 - EX31_RS07120 0.23 +0.0 216,408 - EX31_RS07120 0.44 -1.6 216,689 + EX31_RS07120 0.75 -2.2 216,689 + EX31_RS07120 0.75 +1.0 216,690 - EX31_RS07120 0.75 +1.7 216,827 - -1.6
Or see this region's nucleotide sequence