Strain Fitness in Rahnella sp. WP5 around EX31_RS07085

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07080 and EX31_RS07085 are separated by 312 nucleotidesEX31_RS07085 and EX31_RS07090 are separated by 4 nucleotidesEX31_RS07090 and EX31_RS07095 are separated by 132 nucleotidesEX31_RS07095 and EX31_RS07100 are separated by 52 nucleotides EX31_RS07080: EX31_RS07080 - NCS2 family permease, at 209,290 to 210,585 _RS07080 EX31_RS07085: EX31_RS07085 - LysR family transcriptional regulator, at 210,898 to 211,803 _RS07085 EX31_RS07090: EX31_RS07090 - YnfA family protein, at 211,808 to 212,134 _RS07090 EX31_RS07095: EX31_RS07095 - DUF1283 family protein, at 212,267 to 212,635 _RS07095 EX31_RS07100: EX31_RS07100 - DUF1161 domain-containing protein, at 212,688 to 212,981 _RS07100 Position (kb) 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 210.164 kb on - strand, within EX31_RS07080at 210.164 kb on - strand, within EX31_RS07080at 210.258 kb on + strand, within EX31_RS07080at 210.309 kb on + strand, within EX31_RS07080at 210.427 kb on - strand, within EX31_RS07080at 210.494 kb on + strandat 210.505 kb on + strandat 210.513 kb on + strandat 210.514 kb on - strandat 210.514 kb on - strandat 210.549 kb on + strandat 210.549 kb on + strandat 210.549 kb on + strandat 210.567 kb on + strandat 210.567 kb on + strandat 210.568 kb on - strandat 210.568 kb on - strandat 210.568 kb on - strandat 210.571 kb on + strandat 210.647 kb on + strandat 210.647 kb on + strandat 210.647 kb on + strandat 210.650 kb on + strandat 210.743 kb on + strandat 210.743 kb on + strandat 210.810 kb on - strandat 210.859 kb on + strandat 210.859 kb on + strandat 210.859 kb on + strandat 210.860 kb on - strandat 210.863 kb on + strandat 211.360 kb on - strand, within EX31_RS07085at 211.525 kb on + strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.526 kb on - strand, within EX31_RS07085at 211.566 kb on + strand, within EX31_RS07085at 211.566 kb on + strand, within EX31_RS07085at 211.567 kb on - strand, within EX31_RS07085at 211.637 kb on + strand, within EX31_RS07085at 211.637 kb on + strand, within EX31_RS07085at 211.638 kb on - strand, within EX31_RS07085at 211.649 kb on + strand, within EX31_RS07085at 211.935 kb on + strand, within EX31_RS07090at 211.936 kb on - strand, within EX31_RS07090at 211.936 kb on - strand, within EX31_RS07090at 211.936 kb on - strand, within EX31_RS07090at 211.956 kb on + strand, within EX31_RS07090at 211.956 kb on + strand, within EX31_RS07090at 212.068 kb on - strand, within EX31_RS07090at 212.068 kb on - strand, within EX31_RS07090at 212.073 kb on - strand, within EX31_RS07090at 212.135 kb on - strandat 212.135 kb on - strandat 212.135 kb on - strandat 212.166 kb on + strandat 212.171 kb on + strandat 212.171 kb on + strandat 212.172 kb on - strandat 212.217 kb on + strandat 212.217 kb on + strandat 212.217 kb on + strandat 212.217 kb on + strandat 212.218 kb on - strandat 212.218 kb on - strandat 212.219 kb on + strandat 212.220 kb on - strandat 212.220 kb on - strandat 212.228 kb on + strandat 212.228 kb on + strandat 212.229 kb on - strandat 212.247 kb on + strandat 212.248 kb on - strandat 212.253 kb on - strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.272 kb on + strandat 212.273 kb on - strandat 212.326 kb on + strand, within EX31_RS07095at 212.326 kb on + strand, within EX31_RS07095at 212.326 kb on + strand, within EX31_RS07095at 212.513 kb on + strand, within EX31_RS07095at 212.513 kb on + strand, within EX31_RS07095at 212.570 kb on + strand, within EX31_RS07095at 212.633 kb on + strandat 212.647 kb on + strandat 212.647 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.655 kb on + strandat 212.656 kb on - strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.659 kb on + strandat 212.723 kb on + strand, within EX31_RS07100at 212.764 kb on + strand, within EX31_RS07100

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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210,164 - EX31_RS07080 0.67 -0.6
210,164 - EX31_RS07080 0.67 +1.0
210,258 + EX31_RS07080 0.75 -1.3
210,309 + EX31_RS07080 0.79 +0.0
210,427 - EX31_RS07080 0.88 -1.3
210,494 + -1.3
210,505 + -2.2
210,513 + -1.6
210,514 - -1.0
210,514 - -1.8
210,549 + -1.0
210,549 + +0.0
210,549 + +3.5
210,567 + -1.3
210,567 + +1.2
210,568 - +0.0
210,568 - -0.3
210,568 - +0.7
210,571 + +2.6
210,647 + +0.0
210,647 + +0.0
210,647 + -1.0
210,650 + +2.0
210,743 + +3.3
210,743 + -1.0
210,810 - -2.2
210,859 + +3.0
210,859 + -0.6
210,859 + +2.5
210,860 - -1.8
210,863 + -0.6
211,360 - EX31_RS07085 0.51 -1.8
211,525 + EX31_RS07085 0.69 +0.0
211,526 - EX31_RS07085 0.69 -0.2
211,526 - EX31_RS07085 0.69 +0.0
211,526 - EX31_RS07085 0.69 +0.0
211,526 - EX31_RS07085 0.69 +1.9
211,526 - EX31_RS07085 0.69 +0.0
211,566 + EX31_RS07085 0.74 -0.3
211,566 + EX31_RS07085 0.74 -2.0
211,567 - EX31_RS07085 0.74 +0.0
211,637 + EX31_RS07085 0.82 -0.3
211,637 + EX31_RS07085 0.82 -2.6
211,638 - EX31_RS07085 0.82 -0.6
211,649 + EX31_RS07085 0.83 -0.2
211,935 + EX31_RS07090 0.39 +1.4
211,936 - EX31_RS07090 0.39 -2.9
211,936 - EX31_RS07090 0.39 +1.9
211,936 - EX31_RS07090 0.39 +1.6
211,956 + EX31_RS07090 0.45 -0.6
211,956 + EX31_RS07090 0.45 -2.0
212,068 - EX31_RS07090 0.80 -1.8
212,068 - EX31_RS07090 0.80 -0.6
212,073 - EX31_RS07090 0.81 -1.6
212,135 - +0.0
212,135 - -1.6
212,135 - -0.6
212,166 + +1.0
212,171 + +1.1
212,171 + +0.8
212,172 - +0.0
212,217 + -0.3
212,217 + -1.3
212,217 + -0.7
212,217 + -0.6
212,218 - +1.3
212,218 - +0.0
212,219 + +0.0
212,220 - +1.9
212,220 - -0.6
212,228 + -2.3
212,228 + +1.0
212,229 - -1.3
212,247 + -1.0
212,248 - -0.6
212,253 - -1.0
212,272 + +0.0
212,272 + +3.0
212,272 + -1.6
212,272 + -2.5
212,272 + -1.0
212,272 + +1.1
212,272 + +1.0
212,273 - +0.0
212,326 + EX31_RS07095 0.16 -2.2
212,326 + EX31_RS07095 0.16 +1.0
212,326 + EX31_RS07095 0.16 +2.6
212,513 + EX31_RS07095 0.67 -2.3
212,513 + EX31_RS07095 0.67 +3.5
212,570 + EX31_RS07095 0.82 -1.8
212,633 + -1.6
212,647 + +1.9
212,647 + -1.0
212,655 + +0.6
212,655 + -0.6
212,655 + -1.3
212,655 + +2.2
212,655 + +2.5
212,656 - +1.4
212,659 + -1.3
212,659 + +0.3
212,659 + -1.2
212,659 + +1.9
212,659 + -2.8
212,659 + +3.8
212,723 + EX31_RS07100 0.12 -0.3
212,764 + EX31_RS07100 0.26 -0.6

Or see this region's nucleotide sequence