Strain Fitness in Rahnella sp. WP5 around EX31_RS07055

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07045 and EX31_RS07050 are separated by 60 nucleotidesEX31_RS07050 and EX31_RS07055 overlap by 4 nucleotidesEX31_RS07055 and EX31_RS07060 are separated by 26 nucleotidesEX31_RS07060 and EX31_RS07065 are separated by 0 nucleotides EX31_RS07045: EX31_RS07045 - extracellular solute-binding protein, at 202,081 to 203,331 _RS07045 EX31_RS07050: EX31_RS07050 - sugar ABC transporter permease, at 203,392 to 204,294 _RS07050 EX31_RS07055: EX31_RS07055 - carbohydrate ABC transporter permease, at 204,291 to 205,130 _RS07055 EX31_RS07060: EX31_RS07060 - carbohydrate kinase family protein, at 205,157 to 206,110 _RS07060 EX31_RS07065: EX31_RS07065 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 206,111 to 207,205 _RS07065 Position (kb) 204 205 206Strain fitness (log2 ratio) -2 -1 0 1 2 3at 203.348 kb on + strandat 203.348 kb on + strandat 203.348 kb on + strandat 203.348 kb on + strandat 203.348 kb on + strandat 203.350 kb on + strandat 203.350 kb on + strandat 203.350 kb on + strandat 203.350 kb on + strandat 203.350 kb on + strandat 203.351 kb on - strandat 203.351 kb on - strandat 203.351 kb on - strandat 203.353 kb on + strandat 203.572 kb on + strand, within EX31_RS07050at 203.572 kb on + strand, within EX31_RS07050at 203.803 kb on - strand, within EX31_RS07050at 203.896 kb on - strand, within EX31_RS07050at 203.908 kb on + strand, within EX31_RS07050at 203.964 kb on - strand, within EX31_RS07050at 204.100 kb on + strand, within EX31_RS07050at 204.100 kb on + strand, within EX31_RS07050at 204.101 kb on - strand, within EX31_RS07050at 204.101 kb on - strand, within EX31_RS07050at 204.176 kb on - strand, within EX31_RS07050at 204.247 kb on + strandat 204.247 kb on + strandat 204.247 kb on + strandat 204.247 kb on + strandat 204.248 kb on - strandat 204.260 kb on + strandat 204.261 kb on - strandat 204.261 kb on - strandat 204.261 kb on - strandat 204.261 kb on - strandat 204.317 kb on - strandat 204.459 kb on - strand, within EX31_RS07055at 204.476 kb on - strand, within EX31_RS07055at 204.476 kb on - strand, within EX31_RS07055at 204.584 kb on + strand, within EX31_RS07055at 204.584 kb on + strand, within EX31_RS07055at 204.639 kb on + strand, within EX31_RS07055at 204.675 kb on + strand, within EX31_RS07055at 204.676 kb on - strand, within EX31_RS07055at 204.733 kb on - strand, within EX31_RS07055at 204.733 kb on - strand, within EX31_RS07055at 204.844 kb on + strand, within EX31_RS07055at 204.845 kb on - strand, within EX31_RS07055at 205.190 kb on + strandat 205.191 kb on - strandat 205.191 kb on - strandat 205.396 kb on + strand, within EX31_RS07060at 205.396 kb on + strand, within EX31_RS07060at 205.396 kb on + strand, within EX31_RS07060at 205.396 kb on + strand, within EX31_RS07060at 205.396 kb on + strand, within EX31_RS07060at 205.397 kb on - strand, within EX31_RS07060at 205.397 kb on - strand, within EX31_RS07060at 205.507 kb on + strand, within EX31_RS07060at 205.507 kb on + strand, within EX31_RS07060at 205.507 kb on + strand, within EX31_RS07060at 205.507 kb on + strand, within EX31_RS07060at 205.507 kb on + strand, within EX31_RS07060at 205.508 kb on - strand, within EX31_RS07060at 205.610 kb on + strand, within EX31_RS07060at 205.789 kb on + strand, within EX31_RS07060at 205.988 kb on + strand, within EX31_RS07060

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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203,348 + -2.6
203,348 + +1.5
203,348 + -1.3
203,348 + -2.0
203,348 + +0.0
203,350 + +1.0
203,350 + +0.0
203,350 + +1.0
203,350 + -0.2
203,350 + +1.0
203,351 - +1.4
203,351 - +0.3
203,351 - +1.0
203,353 + -2.0
203,572 + EX31_RS07050 0.20 -1.0
203,572 + EX31_RS07050 0.20 +0.8
203,803 - EX31_RS07050 0.46 +0.0
203,896 - EX31_RS07050 0.56 -1.3
203,908 + EX31_RS07050 0.57 +0.6
203,964 - EX31_RS07050 0.63 +1.0
204,100 + EX31_RS07050 0.78 -2.0
204,100 + EX31_RS07050 0.78 -0.6
204,101 - EX31_RS07050 0.79 +0.8
204,101 - EX31_RS07050 0.79 -1.6
204,176 - EX31_RS07050 0.87 -1.0
204,247 + +0.0
204,247 + -0.2
204,247 + +1.0
204,247 + +0.0
204,248 - +0.8
204,260 + +0.0
204,261 - -0.6
204,261 - -1.6
204,261 - +1.0
204,261 - +1.0
204,317 - +0.4
204,459 - EX31_RS07055 0.20 +1.0
204,476 - EX31_RS07055 0.22 +2.6
204,476 - EX31_RS07055 0.22 -0.6
204,584 + EX31_RS07055 0.35 +1.6
204,584 + EX31_RS07055 0.35 +1.5
204,639 + EX31_RS07055 0.41 -1.6
204,675 + EX31_RS07055 0.46 -1.8
204,676 - EX31_RS07055 0.46 -2.0
204,733 - EX31_RS07055 0.53 +0.0
204,733 - EX31_RS07055 0.53 -2.2
204,844 + EX31_RS07055 0.66 +1.7
204,845 - EX31_RS07055 0.66 +1.9
205,190 + +1.6
205,191 - +1.4
205,191 - +0.0
205,396 + EX31_RS07060 0.25 -2.2
205,396 + EX31_RS07060 0.25 +1.7
205,396 + EX31_RS07060 0.25 +1.0
205,396 + EX31_RS07060 0.25 +1.7
205,396 + EX31_RS07060 0.25 -0.2
205,397 - EX31_RS07060 0.25 +2.0
205,397 - EX31_RS07060 0.25 +1.3
205,507 + EX31_RS07060 0.37 -0.7
205,507 + EX31_RS07060 0.37 -0.6
205,507 + EX31_RS07060 0.37 -0.6
205,507 + EX31_RS07060 0.37 +2.8
205,507 + EX31_RS07060 0.37 +0.0
205,508 - EX31_RS07060 0.37 -0.3
205,610 + EX31_RS07060 0.47 +0.1
205,789 + EX31_RS07060 0.66 +1.3
205,988 + EX31_RS07060 0.87 -2.0

Or see this region's nucleotide sequence