Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06890 and EX31_RS06895 overlap by 17 nucleotides EX31_RS06895 and EX31_RS06900 are separated by 48 nucleotides
EX31_RS06890: EX31_RS06890 - isopenicillin N synthase family oxygenase, at 167,222 to 168,250
_RS06890
EX31_RS06895: EX31_RS06895 - HlyD family secretion protein, at 168,234 to 169,292
_RS06895
EX31_RS06900: EX31_RS06900 - MFS transporter, at 169,341 to 171,071
_RS06900
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 167.373 kb on + strand, within EX31_RS06890 at 167.373 kb on + strand, within EX31_RS06890 at 167.569 kb on + strand, within EX31_RS06890 at 167.761 kb on + strand, within EX31_RS06890 at 167.761 kb on + strand, within EX31_RS06890 at 167.761 kb on + strand, within EX31_RS06890 at 167.762 kb on - strand, within EX31_RS06890 at 167.926 kb on + strand, within EX31_RS06890 at 167.937 kb on + strand, within EX31_RS06890 at 167.941 kb on + strand, within EX31_RS06890 at 167.992 kb on - strand, within EX31_RS06890 at 167.992 kb on - strand, within EX31_RS06890 at 168.238 kb on + strand at 168.238 kb on + strand at 168.270 kb on + strand at 168.270 kb on + strand at 168.374 kb on + strand, within EX31_RS06895 at 168.449 kb on + strand, within EX31_RS06895 at 168.450 kb on - strand, within EX31_RS06895 at 168.592 kb on + strand, within EX31_RS06895 at 168.593 kb on - strand, within EX31_RS06895 at 168.653 kb on + strand, within EX31_RS06895 at 168.654 kb on - strand, within EX31_RS06895 at 168.702 kb on + strand, within EX31_RS06895 at 169.026 kb on + strand, within EX31_RS06895 at 169.026 kb on + strand, within EX31_RS06895 at 169.026 kb on + strand, within EX31_RS06895 at 169.026 kb on + strand, within EX31_RS06895 at 169.040 kb on - strand, within EX31_RS06895 at 169.118 kb on - strand, within EX31_RS06895 at 169.118 kb on - strand, within EX31_RS06895 at 169.118 kb on - strand, within EX31_RS06895 at 169.162 kb on + strand, within EX31_RS06895 at 169.216 kb on + strand at 169.217 kb on - strand at 169.262 kb on + strand at 169.263 kb on - strand at 169.434 kb on - strand at 169.460 kb on + strand at 169.460 kb on + strand at 169.461 kb on - strand at 169.462 kb on + strand at 169.851 kb on - strand, within EX31_RS06900 at 170.054 kb on + strand, within EX31_RS06900 at 170.171 kb on + strand, within EX31_RS06900 at 170.172 kb on - strand, within EX31_RS06900 at 170.273 kb on + strand, within EX31_RS06900
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 167,373 + EX31_RS06890 0.15 +2.2 167,373 + EX31_RS06890 0.15 +1.2 167,569 + EX31_RS06890 0.34 -1.6 167,761 + EX31_RS06890 0.52 +1.7 167,761 + EX31_RS06890 0.52 +0.0 167,761 + EX31_RS06890 0.52 -1.6 167,762 - EX31_RS06890 0.52 +1.8 167,926 + EX31_RS06890 0.68 -1.0 167,937 + EX31_RS06890 0.69 -1.8 167,941 + EX31_RS06890 0.70 +1.0 167,992 - EX31_RS06890 0.75 +1.0 167,992 - EX31_RS06890 0.75 +0.3 168,238 + -1.3 168,238 + +0.7 168,270 + +1.0 168,270 + +1.0 168,374 + EX31_RS06895 0.13 -0.6 168,449 + EX31_RS06895 0.20 -1.8 168,450 - EX31_RS06895 0.20 -1.0 168,592 + EX31_RS06895 0.34 +0.7 168,593 - EX31_RS06895 0.34 -1.6 168,653 + EX31_RS06895 0.40 -1.3 168,654 - EX31_RS06895 0.40 -1.0 168,702 + EX31_RS06895 0.44 +1.4 169,026 + EX31_RS06895 0.75 +0.0 169,026 + EX31_RS06895 0.75 -1.0 169,026 + EX31_RS06895 0.75 +0.0 169,026 + EX31_RS06895 0.75 -1.8 169,040 - EX31_RS06895 0.76 +3.6 169,118 - EX31_RS06895 0.83 -0.4 169,118 - EX31_RS06895 0.83 -1.3 169,118 - EX31_RS06895 0.83 -1.0 169,162 + EX31_RS06895 0.88 +0.2 169,216 + +1.0 169,217 - +0.6 169,262 + -1.3 169,263 - +1.2 169,434 - +0.8 169,460 + +2.0 169,460 + +0.0 169,461 - +1.7 169,462 + -1.0 169,851 - EX31_RS06900 0.29 -1.6 170,054 + EX31_RS06900 0.41 +2.7 170,171 + EX31_RS06900 0.48 +2.5 170,172 - EX31_RS06900 0.48 +1.0 170,273 + EX31_RS06900 0.54 +1.6
Or see this region's nucleotide sequence