Strain Fitness in Rahnella sp. WP5 around EX31_RS06635

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06630 and EX31_RS06635 are separated by 762 nucleotidesEX31_RS06635 and EX31_RS06640 are separated by 36 nucleotides EX31_RS06630: EX31_RS06630 - anaerobic C4-dicarboxylate transporter DcuC, at 100,896 to 102,263 _RS06630 EX31_RS06635: EX31_RS06635 - L-arabinose isomerase, at 103,026 to 104,531 _RS06635 EX31_RS06640: EX31_RS06640 - ribulokinase, at 104,568 to 106,247 _RS06640 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 102.073 kb on + strand, within EX31_RS06630at 102.073 kb on + strand, within EX31_RS06630at 102.074 kb on - strand, within EX31_RS06630at 102.084 kb on - strand, within EX31_RS06630at 102.084 kb on - strand, within EX31_RS06630at 102.084 kb on - strand, within EX31_RS06630at 102.084 kb on - strand, within EX31_RS06630at 102.153 kb on - strandat 102.163 kb on - strandat 102.207 kb on - strandat 102.212 kb on + strandat 102.213 kb on - strandat 102.213 kb on - strandat 102.214 kb on + strandat 102.215 kb on - strandat 102.253 kb on - strandat 102.264 kb on + strandat 102.264 kb on + strandat 102.265 kb on - strandat 102.265 kb on - strandat 102.269 kb on + strandat 102.322 kb on + strandat 102.322 kb on + strandat 102.322 kb on + strandat 102.322 kb on + strandat 102.323 kb on - strandat 102.323 kb on - strandat 102.347 kb on - strandat 102.381 kb on + strandat 102.419 kb on + strandat 102.553 kb on + strandat 102.553 kb on + strandat 102.553 kb on + strandat 102.572 kb on + strandat 102.937 kb on + strandat 102.937 kb on + strandat 102.992 kb on + strandat 103.045 kb on + strandat 103.046 kb on - strandat 103.046 kb on - strandat 103.046 kb on - strandat 103.046 kb on - strandat 103.046 kb on - strandat 103.046 kb on - strandat 103.048 kb on + strandat 103.048 kb on + strandat 103.048 kb on + strandat 103.049 kb on - strandat 103.049 kb on - strandat 103.049 kb on - strandat 103.138 kb on + strandat 103.138 kb on + strandat 103.139 kb on - strandat 103.141 kb on - strandat 103.414 kb on - strand, within EX31_RS06635at 103.522 kb on + strand, within EX31_RS06635at 103.523 kb on - strand, within EX31_RS06635at 103.523 kb on - strand, within EX31_RS06635at 103.523 kb on - strand, within EX31_RS06635at 103.528 kb on + strand, within EX31_RS06635at 103.722 kb on - strand, within EX31_RS06635at 103.823 kb on - strand, within EX31_RS06635at 103.835 kb on - strand, within EX31_RS06635at 103.922 kb on - strand, within EX31_RS06635at 104.288 kb on + strand, within EX31_RS06635at 104.326 kb on + strand, within EX31_RS06635at 104.327 kb on - strand, within EX31_RS06635at 104.424 kb on - strandat 104.533 kb on + strandat 104.533 kb on + strandat 104.534 kb on - strandat 104.623 kb on + strandat 104.632 kb on + strandat 104.633 kb on - strandat 104.645 kb on - strandat 104.645 kb on - strandat 105.033 kb on - strand, within EX31_RS06640at 105.214 kb on + strand, within EX31_RS06640at 105.214 kb on + strand, within EX31_RS06640at 105.214 kb on + strand, within EX31_RS06640at 105.214 kb on + strand, within EX31_RS06640at 105.214 kb on + strand, within EX31_RS06640at 105.214 kb on + strand, within EX31_RS06640at 105.214 kb on + strand, within EX31_RS06640at 105.214 kb on + strand, within EX31_RS06640at 105.214 kb on + strand, within EX31_RS06640at 105.215 kb on - strand, within EX31_RS06640at 105.215 kb on - strand, within EX31_RS06640at 105.215 kb on - strand, within EX31_RS06640at 105.377 kb on + strand, within EX31_RS06640at 105.377 kb on + strand, within EX31_RS06640at 105.377 kb on + strand, within EX31_RS06640at 105.378 kb on - strand, within EX31_RS06640at 105.378 kb on - strand, within EX31_RS06640at 105.380 kb on - strand, within EX31_RS06640at 105.380 kb on - strand, within EX31_RS06640

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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102,073 + EX31_RS06630 0.86 -2.6
102,073 + EX31_RS06630 0.86 -0.6
102,074 - EX31_RS06630 0.86 -0.6
102,084 - EX31_RS06630 0.87 +0.0
102,084 - EX31_RS06630 0.87 -1.3
102,084 - EX31_RS06630 0.87 -1.0
102,084 - EX31_RS06630 0.87 -2.0
102,153 - +3.6
102,163 - +1.0
102,207 - -2.1
102,212 + +0.0
102,213 - -2.1
102,213 - -2.3
102,214 + +0.5
102,215 - +1.0
102,253 - +3.4
102,264 + -1.3
102,264 + -2.0
102,265 - -2.0
102,265 - -0.2
102,269 + +1.6
102,322 + +0.8
102,322 + -1.6
102,322 + -3.1
102,322 + +0.6
102,323 - -1.3
102,323 - -1.8
102,347 - -1.3
102,381 + -1.3
102,419 + +1.3
102,553 + -1.0
102,553 + +1.7
102,553 + +1.0
102,572 + -2.3
102,937 + -0.6
102,937 + -1.3
102,992 + -1.0
103,045 + -0.6
103,046 - +1.6
103,046 - +0.0
103,046 - +0.0
103,046 - +1.2
103,046 - -1.6
103,046 - -2.7
103,048 + +4.4
103,048 + +0.0
103,048 + +0.0
103,049 - +4.1
103,049 - +1.0
103,049 - -2.4
103,138 + -1.0
103,138 + +0.8
103,139 - +0.8
103,141 - -1.8
103,414 - EX31_RS06635 0.26 -2.1
103,522 + EX31_RS06635 0.33 -1.3
103,523 - EX31_RS06635 0.33 -1.8
103,523 - EX31_RS06635 0.33 -0.6
103,523 - EX31_RS06635 0.33 -1.3
103,528 + EX31_RS06635 0.33 +0.0
103,722 - EX31_RS06635 0.46 -2.4
103,823 - EX31_RS06635 0.53 +1.2
103,835 - EX31_RS06635 0.54 -1.0
103,922 - EX31_RS06635 0.59 -1.8
104,288 + EX31_RS06635 0.84 -1.3
104,326 + EX31_RS06635 0.86 -1.0
104,327 - EX31_RS06635 0.86 +1.4
104,424 - +1.5
104,533 + -1.3
104,533 + -3.1
104,534 - -1.0
104,623 + -0.2
104,632 + -2.1
104,633 - +2.0
104,645 - -2.1
104,645 - -1.0
105,033 - EX31_RS06640 0.28 -2.0
105,214 + EX31_RS06640 0.38 +1.2
105,214 + EX31_RS06640 0.38 -2.1
105,214 + EX31_RS06640 0.38 +0.4
105,214 + EX31_RS06640 0.38 -2.1
105,214 + EX31_RS06640 0.38 -0.6
105,214 + EX31_RS06640 0.38 +2.3
105,214 + EX31_RS06640 0.38 +1.0
105,214 + EX31_RS06640 0.38 +0.0
105,214 + EX31_RS06640 0.38 -1.3
105,215 - EX31_RS06640 0.39 +3.6
105,215 - EX31_RS06640 0.39 -1.0
105,215 - EX31_RS06640 0.39 -1.9
105,377 + EX31_RS06640 0.48 +0.8
105,377 + EX31_RS06640 0.48 -0.6
105,377 + EX31_RS06640 0.48 -1.3
105,378 - EX31_RS06640 0.48 +1.0
105,378 - EX31_RS06640 0.48 +0.0
105,380 - EX31_RS06640 0.48 +2.1
105,380 - EX31_RS06640 0.48 +2.9

Or see this region's nucleotide sequence