Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06520 and EX31_RS06525 are separated by 217 nucleotides EX31_RS06525 and EX31_RS06530 are separated by 66 nucleotides EX31_RS06530 and EX31_RS06535 overlap by 4 nucleotides
EX31_RS06520: EX31_RS06520 - two-component system response regulator RstA, at 77,996 to 78,727
_RS06520
EX31_RS06525: EX31_RS06525 - hypothetical protein, at 78,945 to 79,364
_RS06525
EX31_RS06530: EX31_RS06530 - cytochrome c, at 79,431 to 80,666
_RS06530
EX31_RS06535: EX31_RS06535 - GMC family oxidoreductase, at 80,663 to 82,426
_RS06535
Position (kb) 79
80
81 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 78.435 kb on + strand, within EX31_RS06520 at 78.435 kb on + strand, within EX31_RS06520 at 78.435 kb on + strand, within EX31_RS06520 at 78.436 kb on - strand, within EX31_RS06520 at 78.436 kb on - strand, within EX31_RS06520 at 78.436 kb on - strand, within EX31_RS06520 at 78.528 kb on - strand, within EX31_RS06520 at 78.539 kb on + strand, within EX31_RS06520 at 78.539 kb on + strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.572 kb on - strand, within EX31_RS06520 at 78.708 kb on - strand at 78.742 kb on - strand at 78.757 kb on + strand at 78.758 kb on - strand at 78.758 kb on - strand at 78.763 kb on - strand at 78.794 kb on - strand at 78.799 kb on - strand at 78.801 kb on + strand at 78.802 kb on - strand at 78.802 kb on - strand at 78.854 kb on + strand at 78.862 kb on + strand at 78.863 kb on - strand at 78.870 kb on + strand at 78.870 kb on + strand at 78.870 kb on + strand at 78.870 kb on + strand at 78.870 kb on + strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.882 kb on + strand at 78.882 kb on + strand at 78.894 kb on + strand at 78.895 kb on - strand at 78.895 kb on - strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.897 kb on - strand at 78.897 kb on - strand at 78.905 kb on + strand at 78.905 kb on + strand at 78.906 kb on - strand at 78.909 kb on + strand at 78.999 kb on + strand, within EX31_RS06525 at 78.999 kb on + strand, within EX31_RS06525 at 78.999 kb on + strand, within EX31_RS06525 at 78.999 kb on + strand, within EX31_RS06525 at 79.000 kb on - strand, within EX31_RS06525 at 79.000 kb on - strand, within EX31_RS06525 at 79.008 kb on + strand, within EX31_RS06525 at 79.008 kb on + strand, within EX31_RS06525 at 79.008 kb on + strand, within EX31_RS06525 at 79.008 kb on + strand, within EX31_RS06525 at 79.008 kb on + strand, within EX31_RS06525 at 79.008 kb on + strand, within EX31_RS06525 at 79.008 kb on + strand, within EX31_RS06525 at 79.008 kb on + strand, within EX31_RS06525 at 79.008 kb on + strand, within EX31_RS06525 at 79.009 kb on - strand, within EX31_RS06525 at 79.052 kb on + strand, within EX31_RS06525 at 79.052 kb on + strand, within EX31_RS06525 at 79.053 kb on - strand, within EX31_RS06525 at 79.053 kb on - strand, within EX31_RS06525 at 79.056 kb on + strand, within EX31_RS06525 at 79.150 kb on + strand, within EX31_RS06525 at 79.150 kb on + strand, within EX31_RS06525 at 79.217 kb on + strand, within EX31_RS06525 at 79.217 kb on + strand, within EX31_RS06525 at 79.217 kb on + strand, within EX31_RS06525 at 79.217 kb on + strand, within EX31_RS06525 at 79.217 kb on + strand, within EX31_RS06525 at 79.217 kb on + strand, within EX31_RS06525 at 79.218 kb on - strand, within EX31_RS06525 at 79.218 kb on - strand, within EX31_RS06525 at 79.218 kb on - strand, within EX31_RS06525 at 79.221 kb on + strand, within EX31_RS06525 at 79.221 kb on + strand, within EX31_RS06525 at 79.221 kb on + strand, within EX31_RS06525 at 79.221 kb on + strand, within EX31_RS06525 at 79.221 kb on + strand, within EX31_RS06525 at 79.221 kb on + strand, within EX31_RS06525 at 79.221 kb on + strand, within EX31_RS06525 at 79.221 kb on + strand, within EX31_RS06525 at 79.222 kb on - strand, within EX31_RS06525 at 79.232 kb on + strand, within EX31_RS06525 at 79.236 kb on - strand, within EX31_RS06525 at 79.236 kb on - strand, within EX31_RS06525 at 79.276 kb on + strand, within EX31_RS06525 at 79.276 kb on + strand, within EX31_RS06525 at 79.306 kb on + strand, within EX31_RS06525 at 79.307 kb on - strand, within EX31_RS06525 at 79.316 kb on + strand, within EX31_RS06525 at 79.331 kb on - strand at 79.340 kb on + strand at 79.341 kb on - strand at 79.433 kb on - strand at 79.433 kb on - strand at 79.433 kb on - strand at 79.513 kb on + strand at 79.513 kb on + strand at 79.513 kb on + strand at 79.513 kb on + strand at 79.513 kb on + strand at 79.513 kb on + strand at 79.513 kb on + strand at 79.514 kb on - strand at 79.514 kb on - strand at 79.514 kb on - strand at 79.514 kb on - strand at 79.514 kb on - strand at 79.514 kb on - strand at 79.716 kb on - strand, within EX31_RS06530 at 79.741 kb on + strand, within EX31_RS06530 at 79.741 kb on + strand, within EX31_RS06530 at 79.741 kb on + strand, within EX31_RS06530 at 79.742 kb on - strand, within EX31_RS06530 at 79.769 kb on + strand, within EX31_RS06530 at 79.770 kb on - strand, within EX31_RS06530 at 79.831 kb on + strand, within EX31_RS06530 at 79.942 kb on + strand, within EX31_RS06530 at 79.943 kb on - strand, within EX31_RS06530 at 79.943 kb on - strand, within EX31_RS06530 at 79.943 kb on - strand, within EX31_RS06530 at 80.082 kb on - strand, within EX31_RS06530 at 80.082 kb on - strand, within EX31_RS06530 at 80.119 kb on + strand, within EX31_RS06530 at 80.120 kb on - strand, within EX31_RS06530 at 80.120 kb on - strand, within EX31_RS06530 at 80.120 kb on - strand, within EX31_RS06530 at 80.210 kb on + strand, within EX31_RS06530 at 80.281 kb on + strand, within EX31_RS06530 at 80.282 kb on - strand, within EX31_RS06530 at 80.301 kb on - strand, within EX31_RS06530 at 80.313 kb on + strand, within EX31_RS06530 at 80.324 kb on - strand, within EX31_RS06530 at 80.441 kb on + strand, within EX31_RS06530 at 80.442 kb on - strand, within EX31_RS06530 at 80.525 kb on + strand, within EX31_RS06530 at 80.635 kb on - strand at 80.694 kb on + strand at 80.695 kb on - strand at 80.697 kb on + strand at 80.697 kb on + strand at 80.697 kb on + strand at 80.697 kb on + strand at 80.701 kb on + strand at 80.701 kb on + strand at 80.804 kb on - strand at 81.061 kb on + strand, within EX31_RS06535 at 81.061 kb on + strand, within EX31_RS06535 at 81.063 kb on + strand, within EX31_RS06535 at 81.064 kb on - strand, within EX31_RS06535 at 81.064 kb on - strand, within EX31_RS06535 at 81.084 kb on + strand, within EX31_RS06535 at 81.085 kb on - strand, within EX31_RS06535 at 81.085 kb on - strand, within EX31_RS06535 at 81.102 kb on + strand, within EX31_RS06535 at 81.102 kb on + strand, within EX31_RS06535 at 81.102 kb on + strand, within EX31_RS06535 at 81.103 kb on - strand, within EX31_RS06535 at 81.103 kb on - strand, within EX31_RS06535 at 81.142 kb on - strand, within EX31_RS06535 at 81.142 kb on - strand, within EX31_RS06535 at 81.142 kb on - strand, within EX31_RS06535 at 81.396 kb on + strand, within EX31_RS06535 at 81.397 kb on - strand, within EX31_RS06535 at 81.419 kb on + strand, within EX31_RS06535 at 81.546 kb on + strand, within EX31_RS06535 at 81.546 kb on + strand, within EX31_RS06535 at 81.546 kb on + strand, within EX31_RS06535 at 81.650 kb on + strand, within EX31_RS06535 at 81.650 kb on + strand, within EX31_RS06535 at 81.651 kb on - strand, within EX31_RS06535
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 78,435 + EX31_RS06520 0.60 -2.1 78,435 + EX31_RS06520 0.60 -1.0 78,435 + EX31_RS06520 0.60 -1.8 78,436 - EX31_RS06520 0.60 +2.2 78,436 - EX31_RS06520 0.60 -1.0 78,436 - EX31_RS06520 0.60 -1.6 78,528 - EX31_RS06520 0.73 -0.6 78,539 + EX31_RS06520 0.74 +1.0 78,539 + EX31_RS06520 0.74 -3.1 78,540 - EX31_RS06520 0.74 +0.0 78,540 - EX31_RS06520 0.74 -2.3 78,540 - EX31_RS06520 0.74 +1.0 78,540 - EX31_RS06520 0.74 -1.6 78,540 - EX31_RS06520 0.74 +0.5 78,572 - EX31_RS06520 0.79 -0.6 78,708 - +1.8 78,742 - +1.6 78,757 + -1.6 78,758 - -1.8 78,758 - +2.8 78,763 - +0.6 78,794 - +0.9 78,799 - +1.8 78,801 + -0.4 78,802 - -1.3 78,802 - +2.3 78,854 + -2.3 78,862 + +1.2 78,863 - +1.0 78,870 + -0.6 78,870 + +2.6 78,870 + -1.6 78,870 + +1.0 78,870 + -1.0 78,871 - +2.4 78,871 - -0.1 78,871 - -1.0 78,871 - +0.6 78,871 - -1.0 78,871 - -1.0 78,871 - +0.0 78,872 + -2.3 78,872 + +1.5 78,872 + +1.8 78,872 + +1.3 78,872 + -2.3 78,872 + +1.3 78,873 - +1.0 78,873 - -0.6 78,873 - -2.3 78,873 - -0.6 78,873 - +0.5 78,873 - -2.0 78,873 - -2.3 78,874 + +1.8 78,874 + -0.6 78,874 + +1.7 78,874 + -2.4 78,874 + +1.2 78,874 + -2.7 78,882 + +0.9 78,882 + -1.6 78,894 + -2.9 78,895 - -2.1 78,895 - -1.0 78,896 + +1.0 78,896 + -0.1 78,896 + +0.8 78,896 + -2.6 78,896 + +1.4 78,896 + +0.9 78,896 + +0.1 78,896 + +1.3 78,897 - +1.6 78,897 - +1.0 78,905 + +0.0 78,905 + +0.2 78,906 - +1.0 78,909 + +2.0 78,999 + EX31_RS06525 0.13 +0.9 78,999 + EX31_RS06525 0.13 -0.6 78,999 + EX31_RS06525 0.13 +1.0 78,999 + EX31_RS06525 0.13 +0.2 79,000 - EX31_RS06525 0.13 -1.0 79,000 - EX31_RS06525 0.13 +3.6 79,008 + EX31_RS06525 0.15 -0.6 79,008 + EX31_RS06525 0.15 -0.2 79,008 + EX31_RS06525 0.15 -0.9 79,008 + EX31_RS06525 0.15 -1.0 79,008 + EX31_RS06525 0.15 -1.3 79,008 + EX31_RS06525 0.15 -2.7 79,008 + EX31_RS06525 0.15 +1.4 79,008 + EX31_RS06525 0.15 +0.0 79,008 + EX31_RS06525 0.15 +2.2 79,009 - EX31_RS06525 0.15 -1.0 79,052 + EX31_RS06525 0.25 +0.9 79,052 + EX31_RS06525 0.25 +2.0 79,053 - EX31_RS06525 0.26 +1.6 79,053 - EX31_RS06525 0.26 +0.0 79,056 + EX31_RS06525 0.26 +0.4 79,150 + EX31_RS06525 0.49 +1.0 79,150 + EX31_RS06525 0.49 -0.2 79,217 + EX31_RS06525 0.65 -2.6 79,217 + EX31_RS06525 0.65 +1.4 79,217 + EX31_RS06525 0.65 +1.0 79,217 + EX31_RS06525 0.65 -4.0 79,217 + EX31_RS06525 0.65 +0.9 79,217 + EX31_RS06525 0.65 -1.0 79,218 - EX31_RS06525 0.65 +0.0 79,218 - EX31_RS06525 0.65 +1.0 79,218 - EX31_RS06525 0.65 -0.6 79,221 + EX31_RS06525 0.66 +1.4 79,221 + EX31_RS06525 0.66 +2.0 79,221 + EX31_RS06525 0.66 -1.3 79,221 + EX31_RS06525 0.66 -2.0 79,221 + EX31_RS06525 0.66 +0.9 79,221 + EX31_RS06525 0.66 +1.6 79,221 + EX31_RS06525 0.66 -1.3 79,221 + EX31_RS06525 0.66 +0.0 79,222 - EX31_RS06525 0.66 -1.8 79,232 + EX31_RS06525 0.68 -3.0 79,236 - EX31_RS06525 0.69 +1.0 79,236 - EX31_RS06525 0.69 +2.0 79,276 + EX31_RS06525 0.79 +0.1 79,276 + EX31_RS06525 0.79 +0.8 79,306 + EX31_RS06525 0.86 -1.8 79,307 - EX31_RS06525 0.86 -1.6 79,316 + EX31_RS06525 0.88 +1.3 79,331 - +0.2 79,340 + -0.0 79,341 - +2.7 79,433 - -2.3 79,433 - +2.0 79,433 - +2.0 79,513 + -2.1 79,513 + -1.3 79,513 + +2.0 79,513 + +3.0 79,513 + +0.8 79,513 + +1.0 79,513 + +0.0 79,514 - -0.6 79,514 - -2.0 79,514 - -1.3 79,514 - +1.0 79,514 - +0.0 79,514 - -1.3 79,716 - EX31_RS06530 0.23 -1.6 79,741 + EX31_RS06530 0.25 +1.5 79,741 + EX31_RS06530 0.25 +1.0 79,741 + EX31_RS06530 0.25 +1.0 79,742 - EX31_RS06530 0.25 -1.3 79,769 + EX31_RS06530 0.27 -1.6 79,770 - EX31_RS06530 0.27 -2.1 79,831 + EX31_RS06530 0.32 +0.0 79,942 + EX31_RS06530 0.41 -1.3 79,943 - EX31_RS06530 0.41 +0.4 79,943 - EX31_RS06530 0.41 -0.6 79,943 - EX31_RS06530 0.41 -1.0 80,082 - EX31_RS06530 0.53 +1.3 80,082 - EX31_RS06530 0.53 -2.4 80,119 + EX31_RS06530 0.56 +0.5 80,120 - EX31_RS06530 0.56 -0.6 80,120 - EX31_RS06530 0.56 -1.0 80,120 - EX31_RS06530 0.56 -1.3 80,210 + EX31_RS06530 0.63 -1.3 80,281 + EX31_RS06530 0.69 +0.0 80,282 - EX31_RS06530 0.69 +0.0 80,301 - EX31_RS06530 0.70 -0.6 80,313 + EX31_RS06530 0.71 -2.6 80,324 - EX31_RS06530 0.72 -1.0 80,441 + EX31_RS06530 0.82 -1.0 80,442 - EX31_RS06530 0.82 -1.6 80,525 + EX31_RS06530 0.89 -0.5 80,635 - -1.0 80,694 + -1.6 80,695 - +1.0 80,697 + +2.4 80,697 + +0.0 80,697 + +0.2 80,697 + -0.6 80,701 + -0.6 80,701 + -1.0 80,804 - +0.8 81,061 + EX31_RS06535 0.23 +0.3 81,061 + EX31_RS06535 0.23 -2.0 81,063 + EX31_RS06535 0.23 +2.0 81,064 - EX31_RS06535 0.23 -1.3 81,064 - EX31_RS06535 0.23 +2.3 81,084 + EX31_RS06535 0.24 -1.8 81,085 - EX31_RS06535 0.24 -2.0 81,085 - EX31_RS06535 0.24 +1.2 81,102 + EX31_RS06535 0.25 +1.0 81,102 + EX31_RS06535 0.25 +3.4 81,102 + EX31_RS06535 0.25 -1.3 81,103 - EX31_RS06535 0.25 -1.3 81,103 - EX31_RS06535 0.25 +0.4 81,142 - EX31_RS06535 0.27 -1.0 81,142 - EX31_RS06535 0.27 -1.8 81,142 - EX31_RS06535 0.27 -1.0 81,396 + EX31_RS06535 0.42 -2.6 81,397 - EX31_RS06535 0.42 +0.2 81,419 + EX31_RS06535 0.43 +1.4 81,546 + EX31_RS06535 0.50 +0.8 81,546 + EX31_RS06535 0.50 +0.2 81,546 + EX31_RS06535 0.50 -2.3 81,650 + EX31_RS06535 0.56 -1.0 81,650 + EX31_RS06535 0.56 +1.0 81,651 - EX31_RS06535 0.56 +1.7
Or see this region's nucleotide sequence