Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06365 and EX31_RS06370 are separated by 283 nucleotides EX31_RS06370 and EX31_RS06375 are separated by 59 nucleotides
EX31_RS06365: EX31_RS06365 - zinc transporter ZntB, at 36,820 to 37,803
_RS06365
EX31_RS06370: EX31_RS06370 - hypothetical protein, at 38,087 to 38,764
_RS06370
EX31_RS06375: EX31_RS06375 - tRNA 2-thiocytidine(32) synthetase TtcA, at 38,824 to 39,759
_RS06375
Position (kb)
38
39 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 37.104 kb on + strand, within EX31_RS06365 at 37.104 kb on + strand, within EX31_RS06365 at 37.417 kb on + strand, within EX31_RS06365 at 37.417 kb on + strand, within EX31_RS06365 at 37.417 kb on + strand, within EX31_RS06365 at 37.418 kb on - strand, within EX31_RS06365 at 37.418 kb on - strand, within EX31_RS06365 at 37.560 kb on + strand, within EX31_RS06365 at 37.621 kb on + strand, within EX31_RS06365 at 37.621 kb on + strand, within EX31_RS06365 at 37.621 kb on + strand, within EX31_RS06365 at 37.710 kb on + strand at 37.801 kb on + strand at 37.801 kb on + strand at 37.810 kb on - strand at 37.845 kb on + strand at 37.846 kb on - strand at 37.866 kb on + strand at 37.876 kb on + strand at 37.877 kb on - strand at 37.883 kb on + strand at 37.911 kb on + strand at 37.912 kb on - strand at 37.957 kb on + strand at 37.957 kb on + strand at 37.961 kb on + strand at 37.961 kb on + strand at 37.961 kb on + strand at 37.983 kb on + strand at 37.984 kb on - strand at 37.984 kb on - strand at 38.072 kb on + strand at 38.357 kb on + strand, within EX31_RS06370 at 38.357 kb on + strand, within EX31_RS06370 at 38.358 kb on - strand, within EX31_RS06370 at 38.358 kb on - strand, within EX31_RS06370 at 38.358 kb on - strand, within EX31_RS06370 at 38.414 kb on + strand, within EX31_RS06370 at 38.415 kb on - strand, within EX31_RS06370 at 38.415 kb on - strand, within EX31_RS06370 at 38.627 kb on + strand, within EX31_RS06370 at 38.628 kb on - strand, within EX31_RS06370 at 38.639 kb on + strand, within EX31_RS06370 at 38.732 kb on + strand at 38.732 kb on + strand at 38.793 kb on - strand at 38.795 kb on - strand at 38.795 kb on - strand at 38.826 kb on - strand at 38.911 kb on - strand at 39.130 kb on - strand, within EX31_RS06375 at 39.130 kb on - strand, within EX31_RS06375 at 39.130 kb on - strand, within EX31_RS06375 at 39.130 kb on - strand, within EX31_RS06375 at 39.130 kb on - strand, within EX31_RS06375 at 39.175 kb on - strand, within EX31_RS06375 at 39.192 kb on - strand, within EX31_RS06375 at 39.333 kb on + strand, within EX31_RS06375 at 39.438 kb on - strand, within EX31_RS06375 at 39.438 kb on - strand, within EX31_RS06375 at 39.438 kb on - strand, within EX31_RS06375 at 39.438 kb on - strand, within EX31_RS06375 at 39.438 kb on - strand, within EX31_RS06375 at 39.459 kb on + strand, within EX31_RS06375 at 39.460 kb on - strand, within EX31_RS06375 at 39.460 kb on - strand, within EX31_RS06375 at 39.460 kb on - strand, within EX31_RS06375 at 39.460 kb on - strand, within EX31_RS06375 at 39.460 kb on - strand, within EX31_RS06375 at 39.460 kb on - strand, within EX31_RS06375 at 39.460 kb on - strand, within EX31_RS06375 at 39.460 kb on - strand, within EX31_RS06375 at 39.462 kb on - strand, within EX31_RS06375 at 39.462 kb on - strand, within EX31_RS06375 at 39.486 kb on - strand, within EX31_RS06375 at 39.602 kb on + strand, within EX31_RS06375 at 39.602 kb on + strand, within EX31_RS06375 at 39.603 kb on - strand, within EX31_RS06375 at 39.603 kb on - strand, within EX31_RS06375 at 39.603 kb on - strand, within EX31_RS06375 at 39.722 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 37,104 + EX31_RS06365 0.29 +1.6 37,104 + EX31_RS06365 0.29 -2.0 37,417 + EX31_RS06365 0.61 +0.0 37,417 + EX31_RS06365 0.61 -1.4 37,417 + EX31_RS06365 0.61 +1.0 37,418 - EX31_RS06365 0.61 -1.6 37,418 - EX31_RS06365 0.61 +0.4 37,560 + EX31_RS06365 0.75 -2.3 37,621 + EX31_RS06365 0.81 -0.3 37,621 + EX31_RS06365 0.81 -2.7 37,621 + EX31_RS06365 0.81 +2.2 37,710 + +0.0 37,801 + -1.3 37,801 + -1.3 37,810 - +0.0 37,845 + +0.0 37,846 - -1.8 37,866 + +0.2 37,876 + -2.0 37,877 - +1.4 37,883 + -2.3 37,911 + +0.0 37,912 - +4.0 37,957 + +0.5 37,957 + -2.3 37,961 + -0.2 37,961 + -1.0 37,961 + -1.6 37,983 + +2.0 37,984 - +1.8 37,984 - +1.5 38,072 + +0.0 38,357 + EX31_RS06370 0.40 -1.0 38,357 + EX31_RS06370 0.40 -1.8 38,358 - EX31_RS06370 0.40 +1.0 38,358 - EX31_RS06370 0.40 -1.0 38,358 - EX31_RS06370 0.40 +2.4 38,414 + EX31_RS06370 0.48 -1.3 38,415 - EX31_RS06370 0.48 +0.0 38,415 - EX31_RS06370 0.48 +0.5 38,627 + EX31_RS06370 0.80 -0.6 38,628 - EX31_RS06370 0.80 +0.0 38,639 + EX31_RS06370 0.81 -2.6 38,732 + -0.6 38,732 + -0.1 38,793 - -0.6 38,795 - +0.7 38,795 - -2.7 38,826 - +1.6 38,911 - -0.6 39,130 - EX31_RS06375 0.33 +0.0 39,130 - EX31_RS06375 0.33 -0.6 39,130 - EX31_RS06375 0.33 -0.6 39,130 - EX31_RS06375 0.33 +1.3 39,130 - EX31_RS06375 0.33 +1.2 39,175 - EX31_RS06375 0.38 +0.1 39,192 - EX31_RS06375 0.39 -1.8 39,333 + EX31_RS06375 0.54 +1.6 39,438 - EX31_RS06375 0.66 -2.7 39,438 - EX31_RS06375 0.66 -1.0 39,438 - EX31_RS06375 0.66 +0.0 39,438 - EX31_RS06375 0.66 -1.0 39,438 - EX31_RS06375 0.66 -1.0 39,459 + EX31_RS06375 0.68 +1.5 39,460 - EX31_RS06375 0.68 -2.3 39,460 - EX31_RS06375 0.68 +1.0 39,460 - EX31_RS06375 0.68 +0.8 39,460 - EX31_RS06375 0.68 -1.5 39,460 - EX31_RS06375 0.68 -1.0 39,460 - EX31_RS06375 0.68 -0.1 39,460 - EX31_RS06375 0.68 -1.0 39,460 - EX31_RS06375 0.68 +0.1 39,462 - EX31_RS06375 0.68 +3.2 39,462 - EX31_RS06375 0.68 +2.2 39,486 - EX31_RS06375 0.71 -0.6 39,602 + EX31_RS06375 0.83 -1.0 39,602 + EX31_RS06375 0.83 +1.0 39,603 - EX31_RS06375 0.83 +0.8 39,603 - EX31_RS06375 0.83 -2.0 39,603 - EX31_RS06375 0.83 -1.6 39,722 + +3.1
Or see this region's nucleotide sequence