Strain Fitness in Rahnella sp. WP5 around EX31_RS06370

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06365 and EX31_RS06370 are separated by 283 nucleotidesEX31_RS06370 and EX31_RS06375 are separated by 59 nucleotides EX31_RS06365: EX31_RS06365 - zinc transporter ZntB, at 36,820 to 37,803 _RS06365 EX31_RS06370: EX31_RS06370 - hypothetical protein, at 38,087 to 38,764 _RS06370 EX31_RS06375: EX31_RS06375 - tRNA 2-thiocytidine(32) synthetase TtcA, at 38,824 to 39,759 _RS06375 Position (kb) 38 39Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 37.104 kb on + strand, within EX31_RS06365at 37.104 kb on + strand, within EX31_RS06365at 37.417 kb on + strand, within EX31_RS06365at 37.417 kb on + strand, within EX31_RS06365at 37.417 kb on + strand, within EX31_RS06365at 37.418 kb on - strand, within EX31_RS06365at 37.418 kb on - strand, within EX31_RS06365at 37.560 kb on + strand, within EX31_RS06365at 37.621 kb on + strand, within EX31_RS06365at 37.621 kb on + strand, within EX31_RS06365at 37.621 kb on + strand, within EX31_RS06365at 37.710 kb on + strandat 37.801 kb on + strandat 37.801 kb on + strandat 37.810 kb on - strandat 37.845 kb on + strandat 37.846 kb on - strandat 37.866 kb on + strandat 37.876 kb on + strandat 37.877 kb on - strandat 37.883 kb on + strandat 37.911 kb on + strandat 37.912 kb on - strandat 37.957 kb on + strandat 37.957 kb on + strandat 37.961 kb on + strandat 37.961 kb on + strandat 37.961 kb on + strandat 37.983 kb on + strandat 37.984 kb on - strandat 37.984 kb on - strandat 38.072 kb on + strandat 38.357 kb on + strand, within EX31_RS06370at 38.357 kb on + strand, within EX31_RS06370at 38.358 kb on - strand, within EX31_RS06370at 38.358 kb on - strand, within EX31_RS06370at 38.358 kb on - strand, within EX31_RS06370at 38.414 kb on + strand, within EX31_RS06370at 38.415 kb on - strand, within EX31_RS06370at 38.415 kb on - strand, within EX31_RS06370at 38.627 kb on + strand, within EX31_RS06370at 38.628 kb on - strand, within EX31_RS06370at 38.639 kb on + strand, within EX31_RS06370at 38.732 kb on + strandat 38.732 kb on + strandat 38.793 kb on - strandat 38.795 kb on - strandat 38.795 kb on - strandat 38.826 kb on - strandat 38.911 kb on - strandat 39.130 kb on - strand, within EX31_RS06375at 39.130 kb on - strand, within EX31_RS06375at 39.130 kb on - strand, within EX31_RS06375at 39.130 kb on - strand, within EX31_RS06375at 39.130 kb on - strand, within EX31_RS06375at 39.175 kb on - strand, within EX31_RS06375at 39.192 kb on - strand, within EX31_RS06375at 39.333 kb on + strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.438 kb on - strand, within EX31_RS06375at 39.459 kb on + strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.460 kb on - strand, within EX31_RS06375at 39.462 kb on - strand, within EX31_RS06375at 39.462 kb on - strand, within EX31_RS06375at 39.486 kb on - strand, within EX31_RS06375at 39.602 kb on + strand, within EX31_RS06375at 39.602 kb on + strand, within EX31_RS06375at 39.603 kb on - strand, within EX31_RS06375at 39.603 kb on - strand, within EX31_RS06375at 39.603 kb on - strand, within EX31_RS06375at 39.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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37,104 + EX31_RS06365 0.29 +1.6
37,104 + EX31_RS06365 0.29 -2.0
37,417 + EX31_RS06365 0.61 +0.0
37,417 + EX31_RS06365 0.61 -1.4
37,417 + EX31_RS06365 0.61 +1.0
37,418 - EX31_RS06365 0.61 -1.6
37,418 - EX31_RS06365 0.61 +0.4
37,560 + EX31_RS06365 0.75 -2.3
37,621 + EX31_RS06365 0.81 -0.3
37,621 + EX31_RS06365 0.81 -2.7
37,621 + EX31_RS06365 0.81 +2.2
37,710 + +0.0
37,801 + -1.3
37,801 + -1.3
37,810 - +0.0
37,845 + +0.0
37,846 - -1.8
37,866 + +0.2
37,876 + -2.0
37,877 - +1.4
37,883 + -2.3
37,911 + +0.0
37,912 - +4.0
37,957 + +0.5
37,957 + -2.3
37,961 + -0.2
37,961 + -1.0
37,961 + -1.6
37,983 + +2.0
37,984 - +1.8
37,984 - +1.5
38,072 + +0.0
38,357 + EX31_RS06370 0.40 -1.0
38,357 + EX31_RS06370 0.40 -1.8
38,358 - EX31_RS06370 0.40 +1.0
38,358 - EX31_RS06370 0.40 -1.0
38,358 - EX31_RS06370 0.40 +2.4
38,414 + EX31_RS06370 0.48 -1.3
38,415 - EX31_RS06370 0.48 +0.0
38,415 - EX31_RS06370 0.48 +0.5
38,627 + EX31_RS06370 0.80 -0.6
38,628 - EX31_RS06370 0.80 +0.0
38,639 + EX31_RS06370 0.81 -2.6
38,732 + -0.6
38,732 + -0.1
38,793 - -0.6
38,795 - +0.7
38,795 - -2.7
38,826 - +1.6
38,911 - -0.6
39,130 - EX31_RS06375 0.33 +0.0
39,130 - EX31_RS06375 0.33 -0.6
39,130 - EX31_RS06375 0.33 -0.6
39,130 - EX31_RS06375 0.33 +1.3
39,130 - EX31_RS06375 0.33 +1.2
39,175 - EX31_RS06375 0.38 +0.1
39,192 - EX31_RS06375 0.39 -1.8
39,333 + EX31_RS06375 0.54 +1.6
39,438 - EX31_RS06375 0.66 -2.7
39,438 - EX31_RS06375 0.66 -1.0
39,438 - EX31_RS06375 0.66 +0.0
39,438 - EX31_RS06375 0.66 -1.0
39,438 - EX31_RS06375 0.66 -1.0
39,459 + EX31_RS06375 0.68 +1.5
39,460 - EX31_RS06375 0.68 -2.3
39,460 - EX31_RS06375 0.68 +1.0
39,460 - EX31_RS06375 0.68 +0.8
39,460 - EX31_RS06375 0.68 -1.5
39,460 - EX31_RS06375 0.68 -1.0
39,460 - EX31_RS06375 0.68 -0.1
39,460 - EX31_RS06375 0.68 -1.0
39,460 - EX31_RS06375 0.68 +0.1
39,462 - EX31_RS06375 0.68 +3.2
39,462 - EX31_RS06375 0.68 +2.2
39,486 - EX31_RS06375 0.71 -0.6
39,602 + EX31_RS06375 0.83 -1.0
39,602 + EX31_RS06375 0.83 +1.0
39,603 - EX31_RS06375 0.83 +0.8
39,603 - EX31_RS06375 0.83 -2.0
39,603 - EX31_RS06375 0.83 -1.6
39,722 + +3.1

Or see this region's nucleotide sequence