Strain Fitness in Rahnella sp. WP5 around EX31_RS04915

Experiment: NLDM_metabolites (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_metabolites (C)
107,902	-		EX31_RS04905	0.90	+1.4
107,956	-				+0.8
107,961	+				+0.4
107,962	-				-0.0
107,962	-				+0.8
107,962	-				-2.2
107,971	+				-2.6
107,980	-				-2.9
108,009	+				+0.1
108,189	+				+1.4
108,190	-				+1.7
108,210	-				+1.6
108,222	-				-1.9
108,222	-				+1.0
108,265	+				+0.1
108,266	-				-2.7
108,266	-				-2.0
108,382	-				-1.6
108,441	+		EX31_RS04910	0.23	+0.9
108,441	+		EX31_RS04910	0.23	+1.2
108,441	+		EX31_RS04910	0.23	+2.6
108,441	+		EX31_RS04910	0.23	+0.5
108,441	+		EX31_RS04910	0.23	+0.4
108,441	+		EX31_RS04910	0.23	-0.8
108,441	+		EX31_RS04910	0.23	+1.2
108,441	+		EX31_RS04910	0.23	-1.7
108,441	+		EX31_RS04910	0.23	+1.5
108,441	+		EX31_RS04910	0.23	+2.5
108,441	+		EX31_RS04910	0.23	+0.9
108,441	+		EX31_RS04910	0.23	-2.7
108,441	+		EX31_RS04910	0.23	+1.0
108,441	+		EX31_RS04910	0.23	-0.6
108,441	+		EX31_RS04910	0.23	+1.3
108,441	+		EX31_RS04910	0.23	-0.2
108,442	-		EX31_RS04910	0.23	+0.0
108,442	-		EX31_RS04910	0.23	-0.2
108,442	-		EX31_RS04910	0.23	+2.2
108,442	-		EX31_RS04910	0.23	+0.6
108,442	-		EX31_RS04910	0.23	+0.7
108,442	-		EX31_RS04910	0.23	-0.6
108,442	-		EX31_RS04910	0.23	+2.3
108,442	-		EX31_RS04910	0.23	-1.9
108,442	-		EX31_RS04910	0.23	+1.3
108,442	-		EX31_RS04910	0.23	-2.2
108,444	+		EX31_RS04910	0.24	-1.4
108,444	+		EX31_RS04910	0.24	-2.4
108,444	+		EX31_RS04910	0.24	+0.2
108,444	+		EX31_RS04910	0.24	-1.0
108,444	+		EX31_RS04910	0.24	+0.9
108,444	+		EX31_RS04910	0.24	+1.2
108,444	+		EX31_RS04910	0.24	-3.0
108,444	+		EX31_RS04910	0.24	+0.5
108,444	+		EX31_RS04910	0.24	-2.8
108,444	+		EX31_RS04910	0.24	-2.8
108,445	-		EX31_RS04910	0.24	+2.1
108,445	-		EX31_RS04910	0.24	-0.8
108,445	-		EX31_RS04910	0.24	+1.5
108,445	-		EX31_RS04910	0.24	+0.6
108,445	-		EX31_RS04910	0.24	+1.5
108,445	-		EX31_RS04910	0.24	-2.9
108,445	-		EX31_RS04910	0.24	-2.6
108,445	-		EX31_RS04910	0.24	+1.5
108,445	-		EX31_RS04910	0.24	+0.1
108,445	-		EX31_RS04910	0.24	-2.6
108,445	-		EX31_RS04910	0.24	-2.2
108,445	-		EX31_RS04910	0.24	+0.9
108,507	+		EX31_RS04910	0.47	+1.3
108,507	+		EX31_RS04910	0.47	+1.2
108,507	+		EX31_RS04910	0.47	+0.8
108,507	+		EX31_RS04910	0.47	+0.8
108,507	+		EX31_RS04910	0.47	-2.3
108,507	+		EX31_RS04910	0.47	+1.6
108,507	+		EX31_RS04910	0.47	+1.0
108,508	-		EX31_RS04910	0.47	-0.9
108,508	-		EX31_RS04910	0.47	-3.4
108,508	-		EX31_RS04910	0.47	+1.0
108,508	-		EX31_RS04910	0.47	-1.4
108,508	-		EX31_RS04910	0.47	+2.8
108,508	-		EX31_RS04910	0.47	-1.8
108,508	-		EX31_RS04910	0.47	-2.6
108,508	-		EX31_RS04910	0.47	-2.1
108,543	+		EX31_RS04910	0.60	+0.6
108,543	+		EX31_RS04910	0.60	+0.4
108,544	-		EX31_RS04910	0.61	-0.6
108,551	-		EX31_RS04910	0.63	-0.4
108,551	-		EX31_RS04910	0.63	-0.1
108,606	-		EX31_RS04910	0.84	+0.1
108,631	+				-0.3
108,632	-				-1.7
108,654	+				+1.2
108,654	+				-1.9
108,654	+				-1.6
108,654	+				-0.2
108,654	+				+1.3
108,655	-				-0.6
108,655	-				-2.4
108,655	-				+0.0
108,655	-				-2.3
108,674	+				+0.5
108,674	+				-0.8
108,675	-				-3.0
108,742	-				-2.3
108,783	-				+1.4
108,790	+				-0.9
108,790	+				+2.0
108,790	+				+0.2
108,790	+				+1.4
108,790	+				+0.5
108,790	+				-0.2
108,790	+				+0.2
108,790	+				-1.0
108,791	-				+1.2
108,791	-				+2.2
108,791	-				+1.3
108,822	+				-3.6
108,823	-				+1.2
108,823	-				-1.7
108,823	-				+1.5
108,823	-				+0.9
108,823	-				-0.8
108,826	+				+0.2
108,826	+				+0.2
108,826	+				-0.9
108,826	+				-1.6
108,826	+				+0.4
108,826	+				+1.0
108,826	+				-1.8
108,826	+				+1.0
108,827	-				+2.3
108,827	-				+0.8
108,827	-				+0.2
108,827	-				+1.1
108,827	-				+0.2
108,827	-				-1.4
108,827	-				+1.1
108,827	-				+1.8
108,827	-				+0.9
108,829	+				+1.0
108,829	+				-0.6
108,846	+				+1.0
108,847	-				+0.5
108,871	+				-1.1
108,872	-				+0.4
109,045	+		EX31_RS04915	0.22	+1.6
109,046	-		EX31_RS04915	0.22	-0.4
109,046	-		EX31_RS04915	0.22	+0.7
109,049	+		EX31_RS04915	0.23	-0.5
109,104	+		EX31_RS04915	0.30	+0.9
109,104	+		EX31_RS04915	0.30	-2.8
109,257	+		EX31_RS04915	0.49	+0.2
109,257	+		EX31_RS04915	0.49	+1.9
109,257	+		EX31_RS04915	0.49	-0.2
109,257	+		EX31_RS04915	0.49	+1.5
109,258	-		EX31_RS04915	0.50	-0.2
109,258	-		EX31_RS04915	0.50	+0.4
109,258	-		EX31_RS04915	0.50	-0.8
109,258	-		EX31_RS04915	0.50	+0.2
109,258	-		EX31_RS04915	0.50	+3.2
109,281	+		EX31_RS04915	0.52	+0.5
109,281	+		EX31_RS04915	0.52	+0.4
109,281	+		EX31_RS04915	0.52	-1.0
109,282	-		EX31_RS04915	0.53	+0.1
109,282	-		EX31_RS04915	0.53	+1.5
109,282	-		EX31_RS04915	0.53	-0.3
109,282	-		EX31_RS04915	0.53	+0.6
109,282	-		EX31_RS04915	0.53	-0.1
109,282	-		EX31_RS04915	0.53	-0.6
109,343	+		EX31_RS04915	0.60	-0.6
109,419	+		EX31_RS04915	0.70	-1.0
109,419	+		EX31_RS04915	0.70	-0.2
109,419	+		EX31_RS04915	0.70	-2.6
109,420	-		EX31_RS04915	0.70	-0.1
109,420	-		EX31_RS04915	0.70	-1.5
109,420	-		EX31_RS04915	0.70	+2.6
109,420	-		EX31_RS04915	0.70	-2.0
109,420	-		EX31_RS04915	0.70	+0.8
109,505	-		EX31_RS04915	0.81	-2.9
109,646	+				-1.8
109,646	+				+0.1
109,646	+				+1.8
109,647	-				-0.3
109,647	-				+0.1
109,647	-				-0.8
109,652	+				-2.0
109,652	+				+1.7
109,653	-				+0.4
109,653	-				+1.8
109,657	+				+0.3
109,657	+				-2.6
109,657	+				+0.6
109,657	+				-1.7
109,657	+				-1.8
109,657	+				-0.8
109,657	+				+0.5
109,657	+				+0.7
109,657	+				-0.3
109,657	+				+1.8
109,658	-				-0.8
109,658	-				-0.5
109,658	-				+0.2
109,658	-				+0.8
109,658	-				+1.0
109,658	-				+1.3
109,658	-				+0.3
109,658	-				+1.1
109,658	-				-1.0
109,703	+				+0.2
109,703	+				-2.4
109,704	-				-1.6
109,704	-				-0.4
109,727	+				-0.0
109,728	-				-1.0
109,728	-				-2.5
109,865	+		EX31_RS04920	0.24	-0.2
109,865	+		EX31_RS04920	0.24	+0.3
109,866	-		EX31_RS04920	0.24	-2.4
109,907	-		EX31_RS04920	0.30	-0.7
109,907	-		EX31_RS04920	0.30	+1.4
109,985	+		EX31_RS04920	0.41	+1.8
109,986	-		EX31_RS04920	0.42	+0.2
110,075	-		EX31_RS04920	0.54	+0.1
110,092	-		EX31_RS04920	0.57	-2.3
110,092	-		EX31_RS04920	0.57	-0.2
110,092	-		EX31_RS04920	0.57	+0.2
110,092	-		EX31_RS04920	0.57	+0.6
110,143	+		EX31_RS04920	0.64	+1.0
110,143	+		EX31_RS04920	0.64	-0.2
110,144	-		EX31_RS04920	0.64	+0.5
110,302	-		EX31_RS04920	0.87	-0.3
110,331	+				+1.3
110,364	+				-2.4
110,365	-				-0.8
110,365	-				-1.6
110,365	-				-2.1
110,365	-				-0.8
110,378	+				-2.5
110,379	-				+1.5
110,386	+				+2.3
110,386	+				+0.0
110,387	-				+0.9
110,400	+				+2.8
110,400	+				-0.0
110,400	+				+0.3
110,401	-				+1.1
110,445	+				-1.6
110,445	+				+0.1
110,445	+				-2.0
110,446	-				-0.6
110,446	-				+1.8
110,446	-				-3.0
110,458	+				+0.4
110,458	+				-0.3
110,459	-				-1.2
110,459	-				+0.4
110,459	-				+0.4
110,463	+				-2.6
110,471	+				+2.6
110,485	+				+0.2
110,486	-				-1.9
110,494	+				-0.5
110,495	-				-1.0
110,612	+		EX31_RS04925	0.22	-0.1
110,631	+		EX31_RS04925	0.25	-1.8
110,632	-		EX31_RS04925	0.25	+1.8