Strain Fitness in Rahnella sp. WP5 around EX31_RS03710

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03705 and EX31_RS03710 are separated by 160 nucleotidesEX31_RS03710 and EX31_RS03715 are separated by 102 nucleotides EX31_RS03705: EX31_RS03705 - MFS transporter, at 241,292 to 242,455 _RS03705 EX31_RS03710: EX31_RS03710 - glucose uptake inhibitor SgrT, at 242,616 to 242,801 _RS03710 EX31_RS03715: EX31_RS03715 - HTH-type transcriptional regulator SgrR, at 242,904 to 244,565 _RS03715 Position (kb) 242 243Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 241.653 kb on + strand, within EX31_RS03705at 241.749 kb on + strand, within EX31_RS03705at 241.749 kb on + strand, within EX31_RS03705at 241.750 kb on - strand, within EX31_RS03705at 241.750 kb on - strand, within EX31_RS03705at 241.770 kb on + strand, within EX31_RS03705at 241.770 kb on + strand, within EX31_RS03705at 241.770 kb on + strand, within EX31_RS03705at 241.770 kb on + strand, within EX31_RS03705at 241.771 kb on - strand, within EX31_RS03705at 241.771 kb on - strand, within EX31_RS03705at 241.771 kb on - strand, within EX31_RS03705at 241.771 kb on - strand, within EX31_RS03705at 241.771 kb on - strand, within EX31_RS03705at 241.771 kb on - strand, within EX31_RS03705at 241.771 kb on - strand, within EX31_RS03705at 241.771 kb on - strand, within EX31_RS03705at 241.771 kb on - strand, within EX31_RS03705at 241.887 kb on - strand, within EX31_RS03705at 241.916 kb on + strand, within EX31_RS03705at 241.916 kb on + strand, within EX31_RS03705at 241.916 kb on + strand, within EX31_RS03705at 241.916 kb on + strand, within EX31_RS03705at 241.917 kb on - strand, within EX31_RS03705at 241.950 kb on + strand, within EX31_RS03705at 241.950 kb on + strand, within EX31_RS03705at 241.950 kb on + strand, within EX31_RS03705at 241.950 kb on + strand, within EX31_RS03705at 241.950 kb on + strand, within EX31_RS03705at 241.950 kb on + strand, within EX31_RS03705at 241.950 kb on + strand, within EX31_RS03705at 241.950 kb on + strand, within EX31_RS03705at 241.951 kb on - strand, within EX31_RS03705at 241.951 kb on - strand, within EX31_RS03705at 241.951 kb on - strand, within EX31_RS03705at 241.951 kb on - strand, within EX31_RS03705at 241.951 kb on - strand, within EX31_RS03705at 241.951 kb on - strand, within EX31_RS03705at 241.951 kb on - strand, within EX31_RS03705at 241.968 kb on + strand, within EX31_RS03705at 241.968 kb on + strand, within EX31_RS03705at 241.969 kb on - strand, within EX31_RS03705at 241.969 kb on - strand, within EX31_RS03705at 241.969 kb on - strand, within EX31_RS03705at 242.123 kb on + strand, within EX31_RS03705at 242.124 kb on - strand, within EX31_RS03705at 242.124 kb on - strand, within EX31_RS03705at 242.163 kb on + strand, within EX31_RS03705at 242.164 kb on - strand, within EX31_RS03705at 242.305 kb on + strand, within EX31_RS03705at 242.305 kb on + strand, within EX31_RS03705at 242.305 kb on + strand, within EX31_RS03705at 242.306 kb on - strand, within EX31_RS03705at 242.306 kb on - strand, within EX31_RS03705at 242.306 kb on - strand, within EX31_RS03705at 242.306 kb on - strand, within EX31_RS03705at 242.307 kb on + strand, within EX31_RS03705at 242.307 kb on + strand, within EX31_RS03705at 242.307 kb on + strand, within EX31_RS03705at 242.307 kb on + strand, within EX31_RS03705at 242.308 kb on - strand, within EX31_RS03705at 242.308 kb on - strand, within EX31_RS03705at 242.308 kb on - strand, within EX31_RS03705at 242.308 kb on - strand, within EX31_RS03705at 242.379 kb on - strandat 242.379 kb on - strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.427 kb on + strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.428 kb on - strandat 242.431 kb on + strandat 242.431 kb on + strandat 242.431 kb on + strandat 242.431 kb on + strandat 242.432 kb on - strandat 242.437 kb on + strandat 242.437 kb on + strandat 242.438 kb on - strandat 242.485 kb on - strandat 242.485 kb on - strandat 242.504 kb on - strandat 242.575 kb on + strandat 242.575 kb on + strandat 242.575 kb on + strandat 242.576 kb on - strandat 242.576 kb on - strandat 242.576 kb on - strandat 242.576 kb on - strandat 242.576 kb on - strandat 242.576 kb on - strandat 242.576 kb on - strandat 242.576 kb on - strandat 242.576 kb on - strandat 242.583 kb on + strandat 242.584 kb on - strandat 242.584 kb on - strandat 242.601 kb on + strandat 242.684 kb on + strand, within EX31_RS03710at 242.854 kb on - strandat 242.854 kb on - strandat 242.856 kb on + strandat 242.857 kb on - strandat 242.869 kb on - strandat 242.903 kb on + strandat 242.904 kb on - strandat 242.980 kb on + strandat 242.981 kb on - strandat 242.981 kb on - strandat 242.981 kb on - strandat 242.981 kb on - strandat 243.114 kb on + strand, within EX31_RS03715at 243.114 kb on + strand, within EX31_RS03715at 243.116 kb on + strand, within EX31_RS03715at 243.116 kb on + strand, within EX31_RS03715at 243.117 kb on - strand, within EX31_RS03715at 243.184 kb on + strand, within EX31_RS03715at 243.185 kb on - strand, within EX31_RS03715at 243.185 kb on - strand, within EX31_RS03715at 243.263 kb on + strand, within EX31_RS03715at 243.263 kb on + strand, within EX31_RS03715at 243.263 kb on + strand, within EX31_RS03715at 243.264 kb on - strand, within EX31_RS03715at 243.264 kb on - strand, within EX31_RS03715at 243.264 kb on - strand, within EX31_RS03715at 243.279 kb on + strand, within EX31_RS03715at 243.279 kb on + strand, within EX31_RS03715at 243.279 kb on + strand, within EX31_RS03715at 243.279 kb on + strand, within EX31_RS03715at 243.279 kb on + strand, within EX31_RS03715at 243.280 kb on - strand, within EX31_RS03715at 243.280 kb on - strand, within EX31_RS03715at 243.373 kb on + strand, within EX31_RS03715at 243.373 kb on + strand, within EX31_RS03715at 243.373 kb on + strand, within EX31_RS03715at 243.373 kb on + strand, within EX31_RS03715at 243.374 kb on - strand, within EX31_RS03715at 243.374 kb on - strand, within EX31_RS03715at 243.374 kb on - strand, within EX31_RS03715at 243.374 kb on - strand, within EX31_RS03715at 243.450 kb on + strand, within EX31_RS03715at 243.451 kb on - strand, within EX31_RS03715at 243.503 kb on + strand, within EX31_RS03715at 243.503 kb on + strand, within EX31_RS03715at 243.503 kb on + strand, within EX31_RS03715at 243.504 kb on - strand, within EX31_RS03715at 243.506 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.586 kb on + strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.587 kb on - strand, within EX31_RS03715at 243.589 kb on - strand, within EX31_RS03715at 243.590 kb on + strand, within EX31_RS03715at 243.590 kb on + strand, within EX31_RS03715at 243.590 kb on + strand, within EX31_RS03715at 243.591 kb on - strand, within EX31_RS03715at 243.591 kb on - strand, within EX31_RS03715at 243.715 kb on - strand, within EX31_RS03715at 243.728 kb on + strand, within EX31_RS03715at 243.768 kb on + strand, within EX31_RS03715at 243.768 kb on + strand, within EX31_RS03715at 243.769 kb on - strand, within EX31_RS03715

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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241,653 + EX31_RS03705 0.31 +2.0
241,749 + EX31_RS03705 0.39 -2.0
241,749 + EX31_RS03705 0.39 +0.9
241,750 - EX31_RS03705 0.39 -0.4
241,750 - EX31_RS03705 0.39 -2.1
241,770 + EX31_RS03705 0.41 +0.1
241,770 + EX31_RS03705 0.41 +0.4
241,770 + EX31_RS03705 0.41 -0.7
241,770 + EX31_RS03705 0.41 +1.6
241,771 - EX31_RS03705 0.41 -1.7
241,771 - EX31_RS03705 0.41 +1.4
241,771 - EX31_RS03705 0.41 -0.6
241,771 - EX31_RS03705 0.41 -1.9
241,771 - EX31_RS03705 0.41 +4.8
241,771 - EX31_RS03705 0.41 -1.6
241,771 - EX31_RS03705 0.41 +1.0
241,771 - EX31_RS03705 0.41 +0.0
241,771 - EX31_RS03705 0.41 +1.1
241,887 - EX31_RS03705 0.51 +0.6
241,916 + EX31_RS03705 0.54 +1.7
241,916 + EX31_RS03705 0.54 +1.1
241,916 + EX31_RS03705 0.54 +0.6
241,916 + EX31_RS03705 0.54 -0.1
241,917 - EX31_RS03705 0.54 +1.0
241,950 + EX31_RS03705 0.57 -2.5
241,950 + EX31_RS03705 0.57 +1.4
241,950 + EX31_RS03705 0.57 -2.0
241,950 + EX31_RS03705 0.57 +0.9
241,950 + EX31_RS03705 0.57 -0.2
241,950 + EX31_RS03705 0.57 +0.6
241,950 + EX31_RS03705 0.57 -2.5
241,950 + EX31_RS03705 0.57 -1.4
241,951 - EX31_RS03705 0.57 -1.4
241,951 - EX31_RS03705 0.57 +0.8
241,951 - EX31_RS03705 0.57 +1.8
241,951 - EX31_RS03705 0.57 -2.6
241,951 - EX31_RS03705 0.57 +1.0
241,951 - EX31_RS03705 0.57 -2.1
241,951 - EX31_RS03705 0.57 +0.0
241,968 + EX31_RS03705 0.58 +1.2
241,968 + EX31_RS03705 0.58 +0.9
241,969 - EX31_RS03705 0.58 -0.5
241,969 - EX31_RS03705 0.58 -1.1
241,969 - EX31_RS03705 0.58 +1.6
242,123 + EX31_RS03705 0.71 +1.6
242,124 - EX31_RS03705 0.71 -1.4
242,124 - EX31_RS03705 0.71 +1.0
242,163 + EX31_RS03705 0.75 +0.7
242,164 - EX31_RS03705 0.75 +0.4
242,305 + EX31_RS03705 0.87 -1.0
242,305 + EX31_RS03705 0.87 +0.8
242,305 + EX31_RS03705 0.87 -0.9
242,306 - EX31_RS03705 0.87 -2.5
242,306 - EX31_RS03705 0.87 +1.1
242,306 - EX31_RS03705 0.87 +0.1
242,306 - EX31_RS03705 0.87 +1.4
242,307 + EX31_RS03705 0.87 +0.8
242,307 + EX31_RS03705 0.87 -1.0
242,307 + EX31_RS03705 0.87 -1.4
242,307 + EX31_RS03705 0.87 -1.1
242,308 - EX31_RS03705 0.87 -2.5
242,308 - EX31_RS03705 0.87 -1.6
242,308 - EX31_RS03705 0.87 -1.8
242,308 - EX31_RS03705 0.87 -1.7
242,379 - -2.8
242,379 - -0.4
242,427 + +0.9
242,427 + +1.4
242,427 + -0.6
242,427 + +0.1
242,427 + -2.4
242,427 + +1.6
242,427 + +0.4
242,427 + -2.1
242,427 + -0.9
242,427 + -0.7
242,427 + +1.7
242,427 + -1.2
242,428 - -2.3
242,428 - -2.8
242,428 - +0.6
242,428 - -0.5
242,428 - +1.2
242,428 - +0.3
242,428 - +1.7
242,428 - -0.3
242,428 - -2.5
242,428 - -4.1
242,428 - +1.0
242,428 - -0.7
242,428 - +0.2
242,431 + -2.4
242,431 + -0.1
242,431 + +1.0
242,431 + +1.4
242,432 - +2.3
242,437 + -2.3
242,437 + +0.7
242,438 - -3.0
242,485 - +1.4
242,485 - -0.1
242,504 - +1.6
242,575 + +2.3
242,575 + -1.6
242,575 + -3.5
242,576 - +1.3
242,576 - -0.4
242,576 - -2.9
242,576 - +1.4
242,576 - -0.6
242,576 - -0.6
242,576 - -0.4
242,576 - -2.5
242,576 - -0.3
242,583 + -2.6
242,584 - +0.4
242,584 - -1.9
242,601 + -0.3
242,684 + EX31_RS03710 0.37 -0.9
242,854 - -1.1
242,854 - +1.4
242,856 + +0.3
242,857 - +0.7
242,869 - -1.9
242,903 + +2.6
242,904 - -2.1
242,980 + +1.2
242,981 - -2.3
242,981 - +1.4
242,981 - -2.8
242,981 - -1.1
243,114 + EX31_RS03715 0.13 -0.2
243,114 + EX31_RS03715 0.13 +3.8
243,116 + EX31_RS03715 0.13 +2.3
243,116 + EX31_RS03715 0.13 +1.2
243,117 - EX31_RS03715 0.13 -2.5
243,184 + EX31_RS03715 0.17 -3.3
243,185 - EX31_RS03715 0.17 +0.3
243,185 - EX31_RS03715 0.17 -0.3
243,263 + EX31_RS03715 0.22 +0.7
243,263 + EX31_RS03715 0.22 +0.7
243,263 + EX31_RS03715 0.22 +0.9
243,264 - EX31_RS03715 0.22 +1.0
243,264 - EX31_RS03715 0.22 +1.4
243,264 - EX31_RS03715 0.22 +1.1
243,279 + EX31_RS03715 0.23 +1.1
243,279 + EX31_RS03715 0.23 +2.2
243,279 + EX31_RS03715 0.23 -0.3
243,279 + EX31_RS03715 0.23 +1.6
243,279 + EX31_RS03715 0.23 -0.9
243,280 - EX31_RS03715 0.23 -0.9
243,280 - EX31_RS03715 0.23 -0.9
243,373 + EX31_RS03715 0.28 -3.2
243,373 + EX31_RS03715 0.28 +1.1
243,373 + EX31_RS03715 0.28 -3.2
243,373 + EX31_RS03715 0.28 -2.0
243,374 - EX31_RS03715 0.28 -2.1
243,374 - EX31_RS03715 0.28 +1.0
243,374 - EX31_RS03715 0.28 +1.6
243,374 - EX31_RS03715 0.28 +1.4
243,450 + EX31_RS03715 0.33 -1.6
243,451 - EX31_RS03715 0.33 -0.9
243,503 + EX31_RS03715 0.36 +1.2
243,503 + EX31_RS03715 0.36 -0.1
243,503 + EX31_RS03715 0.36 +1.3
243,504 - EX31_RS03715 0.36 +0.8
243,506 + EX31_RS03715 0.36 -2.0
243,586 + EX31_RS03715 0.41 -0.9
243,586 + EX31_RS03715 0.41 +1.6
243,586 + EX31_RS03715 0.41 -0.6
243,586 + EX31_RS03715 0.41 -0.0
243,586 + EX31_RS03715 0.41 -1.0
243,586 + EX31_RS03715 0.41 -2.3
243,586 + EX31_RS03715 0.41 -1.9
243,586 + EX31_RS03715 0.41 -0.4
243,586 + EX31_RS03715 0.41 +1.9
243,586 + EX31_RS03715 0.41 +1.3
243,586 + EX31_RS03715 0.41 +2.0
243,586 + EX31_RS03715 0.41 -0.3
243,586 + EX31_RS03715 0.41 -1.4
243,586 + EX31_RS03715 0.41 +1.2
243,586 + EX31_RS03715 0.41 -0.1
243,586 + EX31_RS03715 0.41 -1.1
243,586 + EX31_RS03715 0.41 -0.7
243,586 + EX31_RS03715 0.41 -0.4
243,586 + EX31_RS03715 0.41 +1.4
243,587 - EX31_RS03715 0.41 -0.9
243,587 - EX31_RS03715 0.41 -0.1
243,587 - EX31_RS03715 0.41 +0.4
243,587 - EX31_RS03715 0.41 +0.6
243,587 - EX31_RS03715 0.41 +1.2
243,587 - EX31_RS03715 0.41 -0.5
243,587 - EX31_RS03715 0.41 +0.3
243,587 - EX31_RS03715 0.41 -2.9
243,587 - EX31_RS03715 0.41 +1.0
243,587 - EX31_RS03715 0.41 -0.6
243,587 - EX31_RS03715 0.41 +0.6
243,587 - EX31_RS03715 0.41 +1.4
243,587 - EX31_RS03715 0.41 -1.1
243,589 - EX31_RS03715 0.41 -0.1
243,590 + EX31_RS03715 0.41 +1.0
243,590 + EX31_RS03715 0.41 -1.7
243,590 + EX31_RS03715 0.41 -0.1
243,591 - EX31_RS03715 0.41 -0.5
243,591 - EX31_RS03715 0.41 +1.2
243,715 - EX31_RS03715 0.49 -1.9
243,728 + EX31_RS03715 0.50 -3.1
243,768 + EX31_RS03715 0.52 +1.5
243,768 + EX31_RS03715 0.52 +1.5
243,769 - EX31_RS03715 0.52 -1.4

Or see this region's nucleotide sequence