Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02360 and EX31_RS02365 are separated by 158 nucleotides EX31_RS02365 and EX31_RS02370 are separated by 224 nucleotides EX31_RS02370 and EX31_RS02375 are separated by 40 nucleotides EX31_RS02375 and EX31_RS02380 are separated by 62 nucleotides EX31_RS02380 and EX31_RS02385 are separated by 134 nucleotides EX31_RS02385 and EX31_RS02390 are separated by 125 nucleotides
EX31_RS02360: EX31_RS02360 - CsbD family protein, at 506,959 to 507,231
_RS02360
EX31_RS02365: EX31_RS02365 - hypothetical protein, at 507,390 to 507,587
_RS02365
EX31_RS02370: EX31_RS02370 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 507,812 to 508,042
_RS02370
EX31_RS02375: EX31_RS02375 - type II toxin-antitoxin system RelE/ParE family toxin, at 508,083 to 508,430
_RS02375
EX31_RS02380: EX31_RS02380 - OsmC family protein, at 508,493 to 508,924
_RS02380
EX31_RS02385: EX31_RS02385 - hypothetical protein, at 509,059 to 509,238
_RS02385
EX31_RS02390: EX31_RS02390 - steroid Delta-isomerase, at 509,364 to 509,699
_RS02390
Position (kb) 508
509 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 507.088 kb on - strand, within EX31_RS02360 at 507.106 kb on + strand, within EX31_RS02360 at 507.106 kb on + strand, within EX31_RS02360 at 507.107 kb on - strand, within EX31_RS02360 at 507.107 kb on - strand, within EX31_RS02360 at 507.213 kb on - strand at 507.213 kb on - strand at 507.229 kb on + strand at 507.230 kb on - strand at 507.284 kb on - strand at 507.284 kb on - strand at 507.315 kb on + strand at 507.315 kb on + strand at 507.334 kb on + strand at 507.503 kb on + strand, within EX31_RS02365 at 507.522 kb on + strand, within EX31_RS02365 at 507.621 kb on + strand at 507.631 kb on + strand at 507.631 kb on + strand at 507.632 kb on - strand at 507.632 kb on - strand at 507.632 kb on - strand at 507.632 kb on - strand at 507.635 kb on + strand at 507.635 kb on + strand at 507.635 kb on + strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.647 kb on - strand at 507.647 kb on - strand at 507.775 kb on + strand at 508.037 kb on + strand at 508.082 kb on + strand at 508.100 kb on + strand at 508.116 kb on + strand at 508.116 kb on + strand at 508.129 kb on + strand, within EX31_RS02375 at 508.135 kb on + strand, within EX31_RS02375 at 508.186 kb on + strand, within EX31_RS02375 at 508.204 kb on + strand, within EX31_RS02375 at 508.204 kb on + strand, within EX31_RS02375 at 508.204 kb on + strand, within EX31_RS02375 at 508.207 kb on + strand, within EX31_RS02375 at 508.207 kb on + strand, within EX31_RS02375 at 508.207 kb on + strand, within EX31_RS02375 at 508.207 kb on + strand, within EX31_RS02375 at 508.208 kb on - strand, within EX31_RS02375 at 508.234 kb on + strand, within EX31_RS02375 at 508.304 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.328 kb on - strand, within EX31_RS02375 at 508.328 kb on - strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.330 kb on - strand, within EX31_RS02375 at 508.330 kb on - strand, within EX31_RS02375 at 508.330 kb on - strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.332 kb on - strand, within EX31_RS02375 at 508.332 kb on - strand, within EX31_RS02375 at 508.332 kb on - strand, within EX31_RS02375 at 508.332 kb on - strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.365 kb on + strand, within EX31_RS02375 at 508.365 kb on + strand, within EX31_RS02375 at 508.365 kb on + strand, within EX31_RS02375 at 508.366 kb on - strand, within EX31_RS02375 at 508.509 kb on + strand at 508.510 kb on - strand at 508.510 kb on - strand at 508.798 kb on + strand, within EX31_RS02380 at 508.799 kb on - strand, within EX31_RS02380 at 508.799 kb on - strand, within EX31_RS02380 at 508.863 kb on + strand, within EX31_RS02380 at 508.864 kb on - strand, within EX31_RS02380 at 508.864 kb on - strand, within EX31_RS02380 at 508.864 kb on - strand, within EX31_RS02380 at 508.879 kb on + strand, within EX31_RS02380 at 508.924 kb on + strand at 508.945 kb on - strand at 508.955 kb on + strand at 508.955 kb on + strand at 508.956 kb on - strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.960 kb on - strand at 508.960 kb on - strand at 508.960 kb on - strand at 508.960 kb on - strand at 508.960 kb on - strand at 508.960 kb on - strand at 508.961 kb on + strand at 508.961 kb on + strand at 508.961 kb on + strand at 508.961 kb on + strand at 508.961 kb on + strand at 508.962 kb on - strand at 508.962 kb on - strand at 508.962 kb on - strand at 508.962 kb on - strand at 508.962 kb on - strand at 508.962 kb on - strand at 508.962 kb on - strand at 508.962 kb on - strand at 509.038 kb on + strand at 509.043 kb on - strand at 509.053 kb on + strand at 509.064 kb on + strand at 509.183 kb on + strand, within EX31_RS02385 at 509.207 kb on - strand, within EX31_RS02385 at 509.361 kb on + strand at 509.361 kb on + strand at 509.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 507,088 - EX31_RS02360 0.47 +2.7 507,106 + EX31_RS02360 0.54 -0.4 507,106 + EX31_RS02360 0.54 -1.8 507,107 - EX31_RS02360 0.54 -1.0 507,107 - EX31_RS02360 0.54 -3.2 507,213 - +1.6 507,213 - -0.0 507,229 + +1.0 507,230 - -1.8 507,284 - -2.2 507,284 - +1.3 507,315 + +0.4 507,315 + -1.4 507,334 + +0.8 507,503 + EX31_RS02365 0.57 -0.0 507,522 + EX31_RS02365 0.67 -2.8 507,621 + -1.0 507,631 + -1.8 507,631 + -0.0 507,632 - +1.1 507,632 - +0.5 507,632 - +2.8 507,632 - +0.8 507,635 + -1.4 507,635 + -0.6 507,635 + -2.6 507,636 - +0.5 507,636 - -3.0 507,636 - +1.4 507,636 - -0.6 507,636 - -2.6 507,636 - -0.0 507,636 - +1.8 507,636 - -1.8 507,636 - +0.2 507,636 - +1.2 507,636 - +2.7 507,636 - -2.2 507,636 - +0.7 507,646 + +3.1 507,646 + +1.1 507,646 + -3.3 507,646 + +0.4 507,646 + -1.6 507,646 + +0.3 507,647 - -1.6 507,647 - -2.4 507,775 + +1.6 508,037 + +1.3 508,082 + +0.6 508,100 + +0.2 508,116 + -0.1 508,116 + +1.0 508,129 + EX31_RS02375 0.13 -1.4 508,135 + EX31_RS02375 0.15 -0.3 508,186 + EX31_RS02375 0.30 -0.4 508,204 + EX31_RS02375 0.35 +1.0 508,204 + EX31_RS02375 0.35 -0.0 508,204 + EX31_RS02375 0.35 -3.7 508,207 + EX31_RS02375 0.36 +0.9 508,207 + EX31_RS02375 0.36 -1.8 508,207 + EX31_RS02375 0.36 -0.6 508,207 + EX31_RS02375 0.36 +1.6 508,208 - EX31_RS02375 0.36 +1.0 508,234 + EX31_RS02375 0.43 +0.3 508,304 + EX31_RS02375 0.64 +1.0 508,327 + EX31_RS02375 0.70 -3.3 508,327 + EX31_RS02375 0.70 -0.0 508,327 + EX31_RS02375 0.70 -2.5 508,327 + EX31_RS02375 0.70 -0.2 508,327 + EX31_RS02375 0.70 +0.4 508,327 + EX31_RS02375 0.70 -1.0 508,327 + EX31_RS02375 0.70 +0.1 508,327 + EX31_RS02375 0.70 +0.5 508,327 + EX31_RS02375 0.70 +0.3 508,327 + EX31_RS02375 0.70 -1.0 508,327 + EX31_RS02375 0.70 +0.8 508,328 - EX31_RS02375 0.70 -0.0 508,328 - EX31_RS02375 0.70 -0.0 508,329 + EX31_RS02375 0.71 -1.0 508,329 + EX31_RS02375 0.71 +1.1 508,329 + EX31_RS02375 0.71 +1.3 508,329 + EX31_RS02375 0.71 -0.4 508,329 + EX31_RS02375 0.71 -2.4 508,329 + EX31_RS02375 0.71 +0.2 508,329 + EX31_RS02375 0.71 -1.0 508,329 + EX31_RS02375 0.71 -1.2 508,329 + EX31_RS02375 0.71 -1.4 508,329 + EX31_RS02375 0.71 -1.4 508,329 + EX31_RS02375 0.71 -3.3 508,329 + EX31_RS02375 0.71 +0.5 508,329 + EX31_RS02375 0.71 +1.0 508,329 + EX31_RS02375 0.71 -0.1 508,329 + EX31_RS02375 0.71 -1.0 508,329 + EX31_RS02375 0.71 -0.3 508,329 + EX31_RS02375 0.71 +1.0 508,329 + EX31_RS02375 0.71 -2.0 508,329 + EX31_RS02375 0.71 -0.9 508,329 + EX31_RS02375 0.71 -2.5 508,329 + EX31_RS02375 0.71 -2.7 508,329 + EX31_RS02375 0.71 -2.2 508,329 + EX31_RS02375 0.71 +0.8 508,329 + EX31_RS02375 0.71 +0.7 508,329 + EX31_RS02375 0.71 -2.8 508,329 + EX31_RS02375 0.71 +0.1 508,329 + EX31_RS02375 0.71 -2.8 508,329 + EX31_RS02375 0.71 +0.6 508,329 + EX31_RS02375 0.71 -2.8 508,329 + EX31_RS02375 0.71 +1.7 508,329 + EX31_RS02375 0.71 -1.6 508,329 + EX31_RS02375 0.71 -0.6 508,330 - EX31_RS02375 0.71 -1.8 508,330 - EX31_RS02375 0.71 -2.8 508,330 - EX31_RS02375 0.71 +3.4 508,331 + EX31_RS02375 0.71 +0.1 508,331 + EX31_RS02375 0.71 -2.8 508,331 + EX31_RS02375 0.71 -2.2 508,331 + EX31_RS02375 0.71 -0.0 508,331 + EX31_RS02375 0.71 +0.3 508,331 + EX31_RS02375 0.71 -1.4 508,331 + EX31_RS02375 0.71 -1.2 508,331 + EX31_RS02375 0.71 -3.2 508,331 + EX31_RS02375 0.71 -0.9 508,331 + EX31_RS02375 0.71 +0.4 508,331 + EX31_RS02375 0.71 +1.4 508,331 + EX31_RS02375 0.71 -1.0 508,331 + EX31_RS02375 0.71 -0.7 508,331 + EX31_RS02375 0.71 -0.6 508,331 + EX31_RS02375 0.71 +0.2 508,331 + EX31_RS02375 0.71 +0.6 508,331 + EX31_RS02375 0.71 +0.1 508,331 + EX31_RS02375 0.71 -1.4 508,332 - EX31_RS02375 0.72 -2.2 508,332 - EX31_RS02375 0.72 -0.6 508,332 - EX31_RS02375 0.72 +2.6 508,332 - EX31_RS02375 0.72 +2.4 508,335 + EX31_RS02375 0.72 -4.0 508,335 + EX31_RS02375 0.72 +0.6 508,335 + EX31_RS02375 0.72 -3.0 508,335 + EX31_RS02375 0.72 -3.7 508,335 + EX31_RS02375 0.72 -2.6 508,365 + EX31_RS02375 0.81 -1.8 508,365 + EX31_RS02375 0.81 +1.3 508,365 + EX31_RS02375 0.81 -2.7 508,366 - EX31_RS02375 0.81 -0.0 508,509 + -1.1 508,510 - -0.6 508,510 - -0.2 508,798 + EX31_RS02380 0.71 -1.4 508,799 - EX31_RS02380 0.71 +1.6 508,799 - EX31_RS02380 0.71 -0.0 508,863 + EX31_RS02380 0.86 +0.1 508,864 - EX31_RS02380 0.86 -0.0 508,864 - EX31_RS02380 0.86 +1.6 508,864 - EX31_RS02380 0.86 -0.4 508,879 + EX31_RS02380 0.89 -1.4 508,924 + -1.4 508,945 - -0.0 508,955 + -0.2 508,955 + -0.6 508,956 - -0.1 508,959 + -2.2 508,959 + -1.8 508,959 + -1.8 508,959 + -0.0 508,959 + +1.2 508,959 + +1.0 508,960 - +1.6 508,960 - -3.6 508,960 - +1.6 508,960 - +1.4 508,960 - -0.0 508,960 - -0.0 508,961 + -0.6 508,961 + +0.9 508,961 + +1.1 508,961 + -1.8 508,961 + +0.9 508,962 - +0.1 508,962 - -1.1 508,962 - +0.7 508,962 - -0.0 508,962 - -1.8 508,962 - +1.5 508,962 - +0.7 508,962 - -2.5 509,038 + -1.8 509,043 - -1.8 509,053 + +2.1 509,064 + +0.5 509,183 + EX31_RS02385 0.69 -1.0 509,207 - EX31_RS02385 0.82 -1.0 509,361 + -2.2 509,361 + +1.4 509,361 + +0.3
Or see this region's nucleotide sequence