Strain Fitness in Rahnella sp. WP5 around EX31_RS02365

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02355 and EX31_RS02360 are separated by 82 nucleotidesEX31_RS02360 and EX31_RS02365 are separated by 158 nucleotidesEX31_RS02365 and EX31_RS02370 are separated by 224 nucleotidesEX31_RS02370 and EX31_RS02375 are separated by 40 nucleotidesEX31_RS02375 and EX31_RS02380 are separated by 62 nucleotides EX31_RS02355: EX31_RS02355 - tellurite resistance methyltransferase TehB, at 506,277 to 506,876 _RS02355 EX31_RS02360: EX31_RS02360 - CsbD family protein, at 506,959 to 507,231 _RS02360 EX31_RS02365: EX31_RS02365 - hypothetical protein, at 507,390 to 507,587 _RS02365 EX31_RS02370: EX31_RS02370 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 507,812 to 508,042 _RS02370 EX31_RS02375: EX31_RS02375 - type II toxin-antitoxin system RelE/ParE family toxin, at 508,083 to 508,430 _RS02375 EX31_RS02380: EX31_RS02380 - OsmC family protein, at 508,493 to 508,924 _RS02380 Position (kb) 507 508Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 506.517 kb on - strand, within EX31_RS02355at 506.525 kb on + strand, within EX31_RS02355at 506.630 kb on + strand, within EX31_RS02355at 506.669 kb on + strand, within EX31_RS02355at 506.757 kb on + strand, within EX31_RS02355at 506.758 kb on - strand, within EX31_RS02355at 506.758 kb on - strand, within EX31_RS02355at 506.758 kb on - strand, within EX31_RS02355at 506.835 kb on + strandat 506.932 kb on + strandat 506.932 kb on + strandat 506.958 kb on + strandat 506.958 kb on + strandat 506.959 kb on - strandat 506.959 kb on - strandat 506.959 kb on - strandat 506.959 kb on - strandat 506.959 kb on - strandat 506.959 kb on - strandat 507.088 kb on - strand, within EX31_RS02360at 507.106 kb on + strand, within EX31_RS02360at 507.106 kb on + strand, within EX31_RS02360at 507.107 kb on - strand, within EX31_RS02360at 507.107 kb on - strand, within EX31_RS02360at 507.213 kb on - strandat 507.213 kb on - strandat 507.229 kb on + strandat 507.230 kb on - strandat 507.284 kb on - strandat 507.284 kb on - strandat 507.315 kb on + strandat 507.315 kb on + strandat 507.334 kb on + strandat 507.503 kb on + strand, within EX31_RS02365at 507.522 kb on + strand, within EX31_RS02365at 507.621 kb on + strandat 507.631 kb on + strandat 507.631 kb on + strandat 507.632 kb on - strandat 507.632 kb on - strandat 507.632 kb on - strandat 507.632 kb on - strandat 507.635 kb on + strandat 507.635 kb on + strandat 507.635 kb on + strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.636 kb on - strandat 507.646 kb on + strandat 507.646 kb on + strandat 507.646 kb on + strandat 507.646 kb on + strandat 507.646 kb on + strandat 507.646 kb on + strandat 507.647 kb on - strandat 507.647 kb on - strandat 507.775 kb on + strandat 508.037 kb on + strandat 508.082 kb on + strandat 508.100 kb on + strandat 508.116 kb on + strandat 508.116 kb on + strandat 508.129 kb on + strand, within EX31_RS02375at 508.135 kb on + strand, within EX31_RS02375at 508.186 kb on + strand, within EX31_RS02375at 508.204 kb on + strand, within EX31_RS02375at 508.204 kb on + strand, within EX31_RS02375at 508.204 kb on + strand, within EX31_RS02375at 508.207 kb on + strand, within EX31_RS02375at 508.207 kb on + strand, within EX31_RS02375at 508.207 kb on + strand, within EX31_RS02375at 508.207 kb on + strand, within EX31_RS02375at 508.208 kb on - strand, within EX31_RS02375at 508.234 kb on + strand, within EX31_RS02375at 508.304 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.327 kb on + strand, within EX31_RS02375at 508.328 kb on - strand, within EX31_RS02375at 508.328 kb on - strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.329 kb on + strand, within EX31_RS02375at 508.330 kb on - strand, within EX31_RS02375at 508.330 kb on - strand, within EX31_RS02375at 508.330 kb on - strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.331 kb on + strand, within EX31_RS02375at 508.332 kb on - strand, within EX31_RS02375at 508.332 kb on - strand, within EX31_RS02375at 508.332 kb on - strand, within EX31_RS02375at 508.332 kb on - strand, within EX31_RS02375at 508.335 kb on + strand, within EX31_RS02375at 508.335 kb on + strand, within EX31_RS02375at 508.335 kb on + strand, within EX31_RS02375at 508.335 kb on + strand, within EX31_RS02375at 508.335 kb on + strand, within EX31_RS02375at 508.365 kb on + strand, within EX31_RS02375at 508.365 kb on + strand, within EX31_RS02375at 508.365 kb on + strand, within EX31_RS02375at 508.366 kb on - strand, within EX31_RS02375at 508.509 kb on + strandat 508.510 kb on - strandat 508.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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506,517 - EX31_RS02355 0.40 -0.6
506,525 + EX31_RS02355 0.41 -1.6
506,630 + EX31_RS02355 0.59 +1.5
506,669 + EX31_RS02355 0.65 +2.3
506,757 + EX31_RS02355 0.80 -2.5
506,758 - EX31_RS02355 0.80 +1.2
506,758 - EX31_RS02355 0.80 +0.6
506,758 - EX31_RS02355 0.80 +1.3
506,835 + -0.0
506,932 + -1.4
506,932 + -0.0
506,958 + -2.9
506,958 + -1.6
506,959 - +0.1
506,959 - -1.0
506,959 - +1.7
506,959 - -0.1
506,959 - +1.8
506,959 - -1.6
507,088 - EX31_RS02360 0.47 +2.7
507,106 + EX31_RS02360 0.54 -0.4
507,106 + EX31_RS02360 0.54 -1.8
507,107 - EX31_RS02360 0.54 -1.0
507,107 - EX31_RS02360 0.54 -3.2
507,213 - +1.6
507,213 - -0.0
507,229 + +1.0
507,230 - -1.8
507,284 - -2.2
507,284 - +1.3
507,315 + +0.4
507,315 + -1.4
507,334 + +0.8
507,503 + EX31_RS02365 0.57 -0.0
507,522 + EX31_RS02365 0.67 -2.8
507,621 + -1.0
507,631 + -1.8
507,631 + -0.0
507,632 - +1.1
507,632 - +0.5
507,632 - +2.8
507,632 - +0.8
507,635 + -1.4
507,635 + -0.6
507,635 + -2.6
507,636 - +0.5
507,636 - -3.0
507,636 - +1.4
507,636 - -0.6
507,636 - -2.6
507,636 - -0.0
507,636 - +1.8
507,636 - -1.8
507,636 - +0.2
507,636 - +1.2
507,636 - +2.7
507,636 - -2.2
507,636 - +0.7
507,646 + +3.1
507,646 + +1.1
507,646 + -3.3
507,646 + +0.4
507,646 + -1.6
507,646 + +0.3
507,647 - -1.6
507,647 - -2.4
507,775 + +1.6
508,037 + +1.3
508,082 + +0.6
508,100 + +0.2
508,116 + -0.1
508,116 + +1.0
508,129 + EX31_RS02375 0.13 -1.4
508,135 + EX31_RS02375 0.15 -0.3
508,186 + EX31_RS02375 0.30 -0.4
508,204 + EX31_RS02375 0.35 +1.0
508,204 + EX31_RS02375 0.35 -0.0
508,204 + EX31_RS02375 0.35 -3.7
508,207 + EX31_RS02375 0.36 +0.9
508,207 + EX31_RS02375 0.36 -1.8
508,207 + EX31_RS02375 0.36 -0.6
508,207 + EX31_RS02375 0.36 +1.6
508,208 - EX31_RS02375 0.36 +1.0
508,234 + EX31_RS02375 0.43 +0.3
508,304 + EX31_RS02375 0.64 +1.0
508,327 + EX31_RS02375 0.70 -3.3
508,327 + EX31_RS02375 0.70 -0.0
508,327 + EX31_RS02375 0.70 -2.5
508,327 + EX31_RS02375 0.70 -0.2
508,327 + EX31_RS02375 0.70 +0.4
508,327 + EX31_RS02375 0.70 -1.0
508,327 + EX31_RS02375 0.70 +0.1
508,327 + EX31_RS02375 0.70 +0.5
508,327 + EX31_RS02375 0.70 +0.3
508,327 + EX31_RS02375 0.70 -1.0
508,327 + EX31_RS02375 0.70 +0.8
508,328 - EX31_RS02375 0.70 -0.0
508,328 - EX31_RS02375 0.70 -0.0
508,329 + EX31_RS02375 0.71 -1.0
508,329 + EX31_RS02375 0.71 +1.1
508,329 + EX31_RS02375 0.71 +1.3
508,329 + EX31_RS02375 0.71 -0.4
508,329 + EX31_RS02375 0.71 -2.4
508,329 + EX31_RS02375 0.71 +0.2
508,329 + EX31_RS02375 0.71 -1.0
508,329 + EX31_RS02375 0.71 -1.2
508,329 + EX31_RS02375 0.71 -1.4
508,329 + EX31_RS02375 0.71 -1.4
508,329 + EX31_RS02375 0.71 -3.3
508,329 + EX31_RS02375 0.71 +0.5
508,329 + EX31_RS02375 0.71 +1.0
508,329 + EX31_RS02375 0.71 -0.1
508,329 + EX31_RS02375 0.71 -1.0
508,329 + EX31_RS02375 0.71 -0.3
508,329 + EX31_RS02375 0.71 +1.0
508,329 + EX31_RS02375 0.71 -2.0
508,329 + EX31_RS02375 0.71 -0.9
508,329 + EX31_RS02375 0.71 -2.5
508,329 + EX31_RS02375 0.71 -2.7
508,329 + EX31_RS02375 0.71 -2.2
508,329 + EX31_RS02375 0.71 +0.8
508,329 + EX31_RS02375 0.71 +0.7
508,329 + EX31_RS02375 0.71 -2.8
508,329 + EX31_RS02375 0.71 +0.1
508,329 + EX31_RS02375 0.71 -2.8
508,329 + EX31_RS02375 0.71 +0.6
508,329 + EX31_RS02375 0.71 -2.8
508,329 + EX31_RS02375 0.71 +1.7
508,329 + EX31_RS02375 0.71 -1.6
508,329 + EX31_RS02375 0.71 -0.6
508,330 - EX31_RS02375 0.71 -1.8
508,330 - EX31_RS02375 0.71 -2.8
508,330 - EX31_RS02375 0.71 +3.4
508,331 + EX31_RS02375 0.71 +0.1
508,331 + EX31_RS02375 0.71 -2.8
508,331 + EX31_RS02375 0.71 -2.2
508,331 + EX31_RS02375 0.71 -0.0
508,331 + EX31_RS02375 0.71 +0.3
508,331 + EX31_RS02375 0.71 -1.4
508,331 + EX31_RS02375 0.71 -1.2
508,331 + EX31_RS02375 0.71 -3.2
508,331 + EX31_RS02375 0.71 -0.9
508,331 + EX31_RS02375 0.71 +0.4
508,331 + EX31_RS02375 0.71 +1.4
508,331 + EX31_RS02375 0.71 -1.0
508,331 + EX31_RS02375 0.71 -0.7
508,331 + EX31_RS02375 0.71 -0.6
508,331 + EX31_RS02375 0.71 +0.2
508,331 + EX31_RS02375 0.71 +0.6
508,331 + EX31_RS02375 0.71 +0.1
508,331 + EX31_RS02375 0.71 -1.4
508,332 - EX31_RS02375 0.72 -2.2
508,332 - EX31_RS02375 0.72 -0.6
508,332 - EX31_RS02375 0.72 +2.6
508,332 - EX31_RS02375 0.72 +2.4
508,335 + EX31_RS02375 0.72 -4.0
508,335 + EX31_RS02375 0.72 +0.6
508,335 + EX31_RS02375 0.72 -3.0
508,335 + EX31_RS02375 0.72 -3.7
508,335 + EX31_RS02375 0.72 -2.6
508,365 + EX31_RS02375 0.81 -1.8
508,365 + EX31_RS02375 0.81 +1.3
508,365 + EX31_RS02375 0.81 -2.7
508,366 - EX31_RS02375 0.81 -0.0
508,509 + -1.1
508,510 - -0.6
508,510 - -0.2

Or see this region's nucleotide sequence