Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02070 and EX31_RS02075 overlap by 8 nucleotides EX31_RS02075 and EX31_RS25110 are separated by 58 nucleotides EX31_RS25110 and EX31_RS02080 are separated by 29 nucleotides
EX31_RS02070: EX31_RS02070 - cytochrome ubiquinol oxidase subunit I, at 453,936 to 455,369
_RS02070
EX31_RS02075: EX31_RS02075 - cytochrome d ubiquinol oxidase subunit II, at 455,362 to 456,366
_RS02075
EX31_RS25110: EX31_RS25110 - DUF2474 domain-containing protein, at 456,425 to 456,574
_RS25110
EX31_RS02080: EX31_RS02080 - FadR family transcriptional regulator, at 456,604 to 457,365
_RS02080
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 454.397 kb on + strand, within EX31_RS02070 at 454.489 kb on + strand, within EX31_RS02070 at 454.489 kb on + strand, within EX31_RS02070 at 454.489 kb on + strand, within EX31_RS02070 at 454.489 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.493 kb on + strand, within EX31_RS02070 at 454.494 kb on - strand, within EX31_RS02070 at 454.494 kb on - strand, within EX31_RS02070 at 454.494 kb on - strand, within EX31_RS02070 at 454.494 kb on - strand, within EX31_RS02070 at 454.494 kb on - strand, within EX31_RS02070 at 454.494 kb on - strand, within EX31_RS02070 at 454.494 kb on - strand, within EX31_RS02070 at 454.494 kb on - strand, within EX31_RS02070 at 454.571 kb on + strand, within EX31_RS02070 at 454.677 kb on + strand, within EX31_RS02070 at 454.745 kb on - strand, within EX31_RS02070 at 454.788 kb on + strand, within EX31_RS02070 at 454.832 kb on + strand, within EX31_RS02070 at 454.832 kb on + strand, within EX31_RS02070 at 454.832 kb on + strand, within EX31_RS02070 at 454.897 kb on + strand, within EX31_RS02070 at 454.977 kb on + strand, within EX31_RS02070 at 454.978 kb on - strand, within EX31_RS02070 at 454.979 kb on + strand, within EX31_RS02070 at 454.979 kb on + strand, within EX31_RS02070 at 455.170 kb on + strand, within EX31_RS02070 at 455.187 kb on + strand, within EX31_RS02070 at 455.187 kb on + strand, within EX31_RS02070 at 455.187 kb on + strand, within EX31_RS02070 at 455.187 kb on + strand, within EX31_RS02070 at 455.187 kb on + strand, within EX31_RS02070 at 455.205 kb on - strand, within EX31_RS02070 at 455.217 kb on + strand, within EX31_RS02070 at 455.217 kb on + strand, within EX31_RS02070 at 455.218 kb on - strand, within EX31_RS02070 at 455.218 kb on - strand, within EX31_RS02070 at 455.231 kb on + strand at 455.289 kb on - strand at 455.371 kb on + strand at 455.371 kb on + strand at 455.371 kb on + strand at 455.371 kb on + strand at 455.371 kb on + strand at 455.371 kb on + strand at 455.371 kb on + strand at 455.371 kb on + strand at 455.376 kb on + strand at 455.376 kb on + strand at 455.376 kb on + strand at 455.376 kb on + strand at 455.379 kb on + strand at 455.379 kb on + strand at 455.379 kb on + strand at 455.379 kb on + strand at 455.379 kb on + strand at 455.379 kb on + strand at 455.379 kb on + strand at 455.380 kb on - strand at 455.380 kb on - strand at 455.380 kb on - strand at 455.380 kb on - strand at 455.380 kb on - strand at 455.380 kb on - strand at 455.380 kb on - strand at 455.380 kb on - strand at 455.381 kb on + strand at 455.382 kb on - strand at 455.382 kb on - strand at 455.399 kb on + strand at 455.399 kb on + strand at 455.416 kb on + strand at 455.417 kb on - strand at 455.417 kb on - strand at 455.417 kb on - strand at 455.451 kb on + strand at 455.456 kb on + strand at 455.561 kb on + strand, within EX31_RS02075 at 455.563 kb on + strand, within EX31_RS02075 at 455.563 kb on + strand, within EX31_RS02075 at 455.563 kb on + strand, within EX31_RS02075 at 455.563 kb on + strand, within EX31_RS02075 at 455.816 kb on + strand, within EX31_RS02075 at 455.886 kb on + strand, within EX31_RS02075 at 455.886 kb on + strand, within EX31_RS02075 at 455.886 kb on + strand, within EX31_RS02075 at 455.886 kb on + strand, within EX31_RS02075 at 455.887 kb on - strand, within EX31_RS02075 at 455.887 kb on - strand, within EX31_RS02075 at 456.088 kb on - strand, within EX31_RS02075 at 456.127 kb on + strand, within EX31_RS02075 at 456.127 kb on + strand, within EX31_RS02075 at 456.127 kb on + strand, within EX31_RS02075 at 456.127 kb on + strand, within EX31_RS02075 at 456.127 kb on + strand, within EX31_RS02075 at 456.127 kb on + strand, within EX31_RS02075 at 456.127 kb on + strand, within EX31_RS02075 at 456.127 kb on + strand, within EX31_RS02075 at 456.127 kb on + strand, within EX31_RS02075 at 456.128 kb on - strand, within EX31_RS02075 at 456.128 kb on - strand, within EX31_RS02075 at 456.128 kb on - strand, within EX31_RS02075 at 456.128 kb on - strand, within EX31_RS02075 at 456.128 kb on - strand, within EX31_RS02075 at 456.129 kb on + strand, within EX31_RS02075 at 456.202 kb on - strand, within EX31_RS02075 at 456.261 kb on + strand, within EX31_RS02075 at 456.261 kb on + strand, within EX31_RS02075 at 456.262 kb on - strand, within EX31_RS02075 at 456.262 kb on - strand, within EX31_RS02075 at 456.262 kb on - strand, within EX31_RS02075 at 456.262 kb on - strand, within EX31_RS02075 at 456.304 kb on + strand at 456.304 kb on + strand at 456.304 kb on + strand at 456.305 kb on - strand at 456.305 kb on - strand at 456.306 kb on + strand at 456.306 kb on + strand at 456.319 kb on + strand at 456.319 kb on + strand at 456.319 kb on + strand at 456.319 kb on + strand at 456.320 kb on - strand at 456.320 kb on - strand at 456.320 kb on - strand at 456.320 kb on - strand at 456.322 kb on + strand at 456.322 kb on + strand at 456.323 kb on - strand at 456.323 kb on - strand at 456.323 kb on - strand at 456.323 kb on - strand at 456.358 kb on + strand at 456.449 kb on - strand, within EX31_RS25110 at 456.492 kb on - strand, within EX31_RS25110 at 456.492 kb on - strand, within EX31_RS25110 at 456.507 kb on + strand, within EX31_RS25110 at 456.532 kb on - strand, within EX31_RS25110 at 456.532 kb on - strand, within EX31_RS25110 at 456.624 kb on + strand at 456.624 kb on + strand at 456.747 kb on - strand, within EX31_RS02080 at 456.751 kb on + strand, within EX31_RS02080 at 456.751 kb on + strand, within EX31_RS02080 at 456.752 kb on - strand, within EX31_RS02080 at 456.844 kb on - strand, within EX31_RS02080 at 456.914 kb on + strand, within EX31_RS02080 at 456.915 kb on - strand, within EX31_RS02080 at 456.915 kb on - strand, within EX31_RS02080 at 457.234 kb on + strand, within EX31_RS02080
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 454,397 + EX31_RS02070 0.32 -2.6 454,489 + EX31_RS02070 0.39 -1.0 454,489 + EX31_RS02070 0.39 -0.0 454,489 + EX31_RS02070 0.39 +0.2 454,489 + EX31_RS02070 0.39 +1.0 454,493 + EX31_RS02070 0.39 +1.5 454,493 + EX31_RS02070 0.39 +1.4 454,493 + EX31_RS02070 0.39 -1.8 454,493 + EX31_RS02070 0.39 +0.7 454,493 + EX31_RS02070 0.39 -1.6 454,493 + EX31_RS02070 0.39 +1.0 454,493 + EX31_RS02070 0.39 -0.0 454,493 + EX31_RS02070 0.39 +1.0 454,493 + EX31_RS02070 0.39 -2.0 454,493 + EX31_RS02070 0.39 -3.0 454,493 + EX31_RS02070 0.39 -0.6 454,493 + EX31_RS02070 0.39 +0.7 454,493 + EX31_RS02070 0.39 +1.2 454,493 + EX31_RS02070 0.39 -0.6 454,493 + EX31_RS02070 0.39 -2.6 454,493 + EX31_RS02070 0.39 -2.2 454,493 + EX31_RS02070 0.39 -2.0 454,493 + EX31_RS02070 0.39 +3.2 454,493 + EX31_RS02070 0.39 +1.0 454,494 - EX31_RS02070 0.39 +1.5 454,494 - EX31_RS02070 0.39 +1.0 454,494 - EX31_RS02070 0.39 -1.6 454,494 - EX31_RS02070 0.39 -1.6 454,494 - EX31_RS02070 0.39 +2.7 454,494 - EX31_RS02070 0.39 +0.3 454,494 - EX31_RS02070 0.39 +1.8 454,494 - EX31_RS02070 0.39 -1.0 454,571 + EX31_RS02070 0.44 +0.6 454,677 + EX31_RS02070 0.52 -0.5 454,745 - EX31_RS02070 0.56 +1.8 454,788 + EX31_RS02070 0.59 -0.0 454,832 + EX31_RS02070 0.62 +0.8 454,832 + EX31_RS02070 0.62 +1.2 454,832 + EX31_RS02070 0.62 -0.0 454,897 + EX31_RS02070 0.67 -0.1 454,977 + EX31_RS02070 0.73 +0.6 454,978 - EX31_RS02070 0.73 +1.3 454,979 + EX31_RS02070 0.73 -3.4 454,979 + EX31_RS02070 0.73 +2.2 455,170 + EX31_RS02070 0.86 +1.6 455,187 + EX31_RS02070 0.87 -0.2 455,187 + EX31_RS02070 0.87 +0.6 455,187 + EX31_RS02070 0.87 -0.4 455,187 + EX31_RS02070 0.87 -0.6 455,187 + EX31_RS02070 0.87 -2.7 455,205 - EX31_RS02070 0.88 +2.4 455,217 + EX31_RS02070 0.89 -0.3 455,217 + EX31_RS02070 0.89 -2.5 455,218 - EX31_RS02070 0.89 -1.6 455,218 - EX31_RS02070 0.89 -2.4 455,231 + -2.5 455,289 - -1.4 455,371 + -2.7 455,371 + -2.9 455,371 + +1.0 455,371 + +2.2 455,371 + +2.6 455,371 + -0.5 455,371 + -3.3 455,371 + -2.0 455,376 + -2.4 455,376 + -2.5 455,376 + +0.2 455,376 + -1.0 455,379 + +3.0 455,379 + +1.0 455,379 + -0.0 455,379 + +1.5 455,379 + -1.6 455,379 + -3.3 455,379 + +1.2 455,380 - +1.4 455,380 - -1.4 455,380 - -2.8 455,380 - -1.4 455,380 - -0.4 455,380 - -0.0 455,380 - -1.0 455,380 - +0.4 455,381 + +0.2 455,382 - -1.4 455,382 - -2.6 455,399 + -0.9 455,399 + -1.0 455,416 + -0.6 455,417 - -2.4 455,417 - -0.3 455,417 - +1.0 455,451 + +0.3 455,456 + +1.0 455,561 + EX31_RS02075 0.20 +0.5 455,563 + EX31_RS02075 0.20 -2.7 455,563 + EX31_RS02075 0.20 -2.0 455,563 + EX31_RS02075 0.20 -2.2 455,563 + EX31_RS02075 0.20 +1.0 455,816 + EX31_RS02075 0.45 -2.7 455,886 + EX31_RS02075 0.52 -1.4 455,886 + EX31_RS02075 0.52 +1.0 455,886 + EX31_RS02075 0.52 -1.8 455,886 + EX31_RS02075 0.52 +0.5 455,887 - EX31_RS02075 0.52 -0.8 455,887 - EX31_RS02075 0.52 +1.9 456,088 - EX31_RS02075 0.72 +0.8 456,127 + EX31_RS02075 0.76 -1.6 456,127 + EX31_RS02075 0.76 -3.3 456,127 + EX31_RS02075 0.76 -0.6 456,127 + EX31_RS02075 0.76 -0.8 456,127 + EX31_RS02075 0.76 -1.8 456,127 + EX31_RS02075 0.76 +0.6 456,127 + EX31_RS02075 0.76 -1.4 456,127 + EX31_RS02075 0.76 -1.9 456,127 + EX31_RS02075 0.76 -1.0 456,128 - EX31_RS02075 0.76 -0.6 456,128 - EX31_RS02075 0.76 -2.0 456,128 - EX31_RS02075 0.76 +2.7 456,128 - EX31_RS02075 0.76 +0.8 456,128 - EX31_RS02075 0.76 -2.8 456,129 + EX31_RS02075 0.76 -0.0 456,202 - EX31_RS02075 0.84 -0.0 456,261 + EX31_RS02075 0.89 +1.9 456,261 + EX31_RS02075 0.89 -1.4 456,262 - EX31_RS02075 0.90 -1.6 456,262 - EX31_RS02075 0.90 +0.2 456,262 - EX31_RS02075 0.90 +1.2 456,262 - EX31_RS02075 0.90 +2.3 456,304 + +2.2 456,304 + -1.0 456,304 + -0.0 456,305 - +1.0 456,305 - -1.0 456,306 + -2.0 456,306 + -2.0 456,319 + +2.0 456,319 + -0.2 456,319 + +3.0 456,319 + -2.4 456,320 - +1.0 456,320 - +1.8 456,320 - -2.0 456,320 - +2.3 456,322 + -1.4 456,322 + -1.4 456,323 - -1.6 456,323 - +1.0 456,323 - +2.4 456,323 - -1.8 456,358 + +1.1 456,449 - EX31_RS25110 0.16 -2.4 456,492 - EX31_RS25110 0.45 -1.6 456,492 - EX31_RS25110 0.45 -1.0 456,507 + EX31_RS25110 0.55 -0.2 456,532 - EX31_RS25110 0.71 +2.3 456,532 - EX31_RS25110 0.71 -0.6 456,624 + -1.6 456,624 + +1.3 456,747 - EX31_RS02080 0.19 -1.6 456,751 + EX31_RS02080 0.19 +2.7 456,751 + EX31_RS02080 0.19 +2.6 456,752 - EX31_RS02080 0.19 +3.6 456,844 - EX31_RS02080 0.31 +1.3 456,914 + EX31_RS02080 0.41 +2.3 456,915 - EX31_RS02080 0.41 -1.0 456,915 - EX31_RS02080 0.41 -0.6 457,234 + EX31_RS02080 0.83 -0.0
Or see this region's nucleotide sequence