Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02010 and EX31_RS25105 are separated by 11 nucleotides EX31_RS25105 and EX31_RS02015 are separated by 36 nucleotides EX31_RS02015 and EX31_RS02020 are separated by 47 nucleotides EX31_RS02020 and EX31_RS02025 are separated by 228 nucleotides
EX31_RS02010: EX31_RS02010 - cytochrome d ubiquinol oxidase subunit II, at 440,199 to 441,206
_RS02010
EX31_RS25105: EX31_RS25105 - DUF2474 domain-containing protein, at 441,218 to 441,382
_RS25105
EX31_RS02015: EX31_RS02015 - TetR family transcriptional regulator, at 441,419 to 441,997
_RS02015
EX31_RS02020: EX31_RS02020 - MFS transporter, at 442,045 to 443,541
_RS02020
EX31_RS02025: EX31_RS02025 - ABC transporter substrate-binding protein, at 443,770 to 445,284
_RS02025
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 441.144 kb on + strand at 441.160 kb on - strand at 441.162 kb on + strand at 441.162 kb on + strand at 441.163 kb on - strand at 441.163 kb on - strand at 441.257 kb on - strand, within EX31_RS25105 at 441.322 kb on - strand, within EX31_RS25105 at 441.380 kb on + strand at 441.380 kb on + strand at 441.455 kb on - strand at 441.514 kb on - strand, within EX31_RS02015 at 441.625 kb on + strand, within EX31_RS02015 at 441.625 kb on + strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.665 kb on - strand, within EX31_RS02015 at 441.694 kb on - strand, within EX31_RS02015 at 441.707 kb on - strand, within EX31_RS02015 at 441.730 kb on - strand, within EX31_RS02015 at 441.730 kb on - strand, within EX31_RS02015 at 441.730 kb on - strand, within EX31_RS02015 at 441.730 kb on - strand, within EX31_RS02015 at 441.865 kb on - strand, within EX31_RS02015 at 441.865 kb on - strand, within EX31_RS02015 at 441.892 kb on - strand, within EX31_RS02015 at 441.998 kb on - strand at 442.044 kb on - strand at 442.044 kb on - strand at 442.074 kb on + strand at 442.074 kb on + strand at 442.075 kb on - strand at 442.908 kb on - strand, within EX31_RS02020 at 442.971 kb on + strand, within EX31_RS02020 at 442.971 kb on + strand, within EX31_RS02020 at 442.972 kb on - strand, within EX31_RS02020 at 442.975 kb on - strand, within EX31_RS02020 at 443.399 kb on - strand at 443.399 kb on - strand at 443.472 kb on + strand at 443.473 kb on - strand at 443.496 kb on + strand at 443.515 kb on + strand at 443.541 kb on + strand at 443.541 kb on + strand at 443.557 kb on + strand at 443.591 kb on - strand at 443.654 kb on - strand at 443.654 kb on - strand at 443.654 kb on - strand at 443.745 kb on + strand at 443.745 kb on + strand at 443.746 kb on - strand at 443.746 kb on - strand at 443.864 kb on + strand at 443.864 kb on + strand at 443.865 kb on - strand at 443.868 kb on - strand at 443.868 kb on - strand at 443.918 kb on + strand at 443.918 kb on + strand at 443.918 kb on + strand at 443.919 kb on - strand at 443.919 kb on - strand at 443.919 kb on - strand at 444.005 kb on + strand, within EX31_RS02025 at 444.033 kb on + strand, within EX31_RS02025 at 444.077 kb on + strand, within EX31_RS02025 at 444.077 kb on + strand, within EX31_RS02025 at 444.233 kb on + strand, within EX31_RS02025 at 444.234 kb on - strand, within EX31_RS02025 at 444.320 kb on + strand, within EX31_RS02025 at 444.321 kb on - strand, within EX31_RS02025 at 444.321 kb on - strand, within EX31_RS02025 at 444.326 kb on + strand, within EX31_RS02025 at 444.326 kb on + strand, within EX31_RS02025 at 444.327 kb on - strand, within EX31_RS02025 at 444.327 kb on - strand, within EX31_RS02025 at 444.347 kb on + strand, within EX31_RS02025 at 444.348 kb on - strand, within EX31_RS02025 at 444.402 kb on + strand, within EX31_RS02025
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 441,144 + -1.4 441,160 - -0.6 441,162 + -1.6 441,162 + +2.5 441,163 - +1.8 441,163 - -1.8 441,257 - EX31_RS25105 0.24 -2.2 441,322 - EX31_RS25105 0.63 -2.0 441,380 + -2.5 441,380 + -2.0 441,455 - +1.2 441,514 - EX31_RS02015 0.16 -1.1 441,625 + EX31_RS02015 0.36 -0.6 441,625 + EX31_RS02015 0.36 -1.6 441,626 - EX31_RS02015 0.36 +1.8 441,626 - EX31_RS02015 0.36 -3.4 441,626 - EX31_RS02015 0.36 -2.9 441,626 - EX31_RS02015 0.36 -1.0 441,626 - EX31_RS02015 0.36 +0.8 441,626 - EX31_RS02015 0.36 +0.3 441,626 - EX31_RS02015 0.36 -0.6 441,626 - EX31_RS02015 0.36 -0.0 441,626 - EX31_RS02015 0.36 -2.4 441,626 - EX31_RS02015 0.36 -1.1 441,626 - EX31_RS02015 0.36 +1.3 441,665 - EX31_RS02015 0.42 +1.5 441,694 - EX31_RS02015 0.47 +1.2 441,707 - EX31_RS02015 0.50 +0.7 441,730 - EX31_RS02015 0.54 +1.4 441,730 - EX31_RS02015 0.54 -0.7 441,730 - EX31_RS02015 0.54 +0.2 441,730 - EX31_RS02015 0.54 +1.3 441,865 - EX31_RS02015 0.77 -1.8 441,865 - EX31_RS02015 0.77 +0.8 441,892 - EX31_RS02015 0.82 +1.2 441,998 - +1.2 442,044 - +1.4 442,044 - +0.2 442,074 + +1.1 442,074 + +0.2 442,075 - +0.7 442,908 - EX31_RS02020 0.58 -0.0 442,971 + EX31_RS02020 0.62 +1.0 442,971 + EX31_RS02020 0.62 -3.3 442,972 - EX31_RS02020 0.62 -1.6 442,975 - EX31_RS02020 0.62 -0.6 443,399 - -1.0 443,399 - +1.2 443,472 + -1.0 443,473 - +1.0 443,496 + +1.1 443,515 + -0.0 443,541 + -0.0 443,541 + +0.7 443,557 + -1.6 443,591 - -1.6 443,654 - -1.4 443,654 - +2.4 443,654 - +1.8 443,745 + +3.4 443,745 + -1.4 443,746 - +0.1 443,746 - -2.0 443,864 + +1.0 443,864 + -1.0 443,865 - -2.2 443,868 - +2.4 443,868 - +1.8 443,918 + +1.2 443,918 + +1.2 443,918 + -1.4 443,919 - -1.4 443,919 - -2.7 443,919 - +0.9 444,005 + EX31_RS02025 0.16 -1.0 444,033 + EX31_RS02025 0.17 -0.0 444,077 + EX31_RS02025 0.20 -1.6 444,077 + EX31_RS02025 0.20 +2.0 444,233 + EX31_RS02025 0.31 -0.3 444,234 - EX31_RS02025 0.31 +1.0 444,320 + EX31_RS02025 0.36 +3.6 444,321 - EX31_RS02025 0.36 +0.9 444,321 - EX31_RS02025 0.36 +2.6 444,326 + EX31_RS02025 0.37 -1.4 444,326 + EX31_RS02025 0.37 -0.4 444,327 - EX31_RS02025 0.37 -1.0 444,327 - EX31_RS02025 0.37 +1.0 444,347 + EX31_RS02025 0.38 -2.4 444,348 - EX31_RS02025 0.38 -0.0 444,402 + EX31_RS02025 0.42 -2.5
Or see this region's nucleotide sequence