Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01655 and EX31_RS01660 are separated by 62 nucleotides EX31_RS01660 and EX31_RS01665 are separated by 10 nucleotides EX31_RS01665 and EX31_RS01670 overlap by 8 nucleotides EX31_RS01670 and EX31_RS01675 are separated by 1 nucleotides
EX31_RS01655: EX31_RS01655 - hypothetical protein, at 367,554 to 367,757
_RS01655
EX31_RS01660: EX31_RS01660 - hypothetical protein, at 367,820 to 368,077
_RS01660
EX31_RS01665: EX31_RS01665 - lysis protein, at 368,088 to 368,594
_RS01665
EX31_RS01670: EX31_RS01670 - lysozyme, at 368,587 to 369,117
_RS01670
EX31_RS01675: EX31_RS01675 - hypothetical protein, at 369,119 to 369,388
_RS01675
Position (kb) 368
369
370 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 367.595 kb on - strand, within EX31_RS01655 at 367.657 kb on + strand, within EX31_RS01655 at 367.721 kb on + strand, within EX31_RS01655 at 367.722 kb on - strand, within EX31_RS01655 at 367.722 kb on - strand, within EX31_RS01655 at 367.725 kb on + strand, within EX31_RS01655 at 367.726 kb on - strand, within EX31_RS01655 at 367.726 kb on - strand, within EX31_RS01655 at 367.761 kb on + strand at 367.762 kb on - strand at 367.770 kb on + strand at 367.770 kb on + strand at 367.804 kb on + strand at 367.805 kb on - strand at 367.807 kb on + strand at 367.807 kb on + strand at 367.808 kb on - strand at 367.812 kb on - strand at 367.812 kb on - strand at 367.821 kb on + strand at 367.822 kb on - strand at 367.908 kb on + strand, within EX31_RS01660 at 367.909 kb on - strand, within EX31_RS01660 at 367.909 kb on - strand, within EX31_RS01660 at 367.948 kb on + strand, within EX31_RS01660 at 367.985 kb on - strand, within EX31_RS01660 at 368.021 kb on - strand, within EX31_RS01660 at 368.044 kb on + strand, within EX31_RS01660 at 368.090 kb on - strand at 368.126 kb on - strand at 368.126 kb on - strand at 368.126 kb on - strand at 368.704 kb on - strand, within EX31_RS01670 at 368.836 kb on + strand, within EX31_RS01670 at 368.837 kb on - strand, within EX31_RS01670 at 368.837 kb on - strand, within EX31_RS01670 at 368.837 kb on - strand, within EX31_RS01670 at 368.845 kb on - strand, within EX31_RS01670 at 368.908 kb on - strand, within EX31_RS01670 at 368.951 kb on + strand, within EX31_RS01670 at 368.952 kb on - strand, within EX31_RS01670 at 368.952 kb on - strand, within EX31_RS01670 at 368.970 kb on + strand, within EX31_RS01670 at 369.253 kb on - strand, within EX31_RS01675 at 369.253 kb on - strand, within EX31_RS01675 at 369.253 kb on - strand, within EX31_RS01675 at 369.317 kb on + strand, within EX31_RS01675 at 369.318 kb on - strand, within EX31_RS01675 at 369.354 kb on + strand, within EX31_RS01675 at 369.354 kb on + strand, within EX31_RS01675 at 369.354 kb on + strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.359 kb on - strand, within EX31_RS01675 at 369.437 kb on - strand at 369.559 kb on - strand at 369.562 kb on + strand at 369.563 kb on - strand at 369.641 kb on + strand at 369.641 kb on + strand at 369.642 kb on - strand at 369.642 kb on - strand at 369.690 kb on + strand at 369.845 kb on - strand at 369.863 kb on - strand at 369.863 kb on - strand at 369.865 kb on + strand at 369.866 kb on - strand at 369.866 kb on - strand at 369.866 kb on - strand at 369.953 kb on + strand at 369.968 kb on - strand at 369.972 kb on - strand at 369.972 kb on - strand at 370.035 kb on + strand at 370.036 kb on - strand at 370.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 367,595 - EX31_RS01655 0.20 -1.7 367,657 + EX31_RS01655 0.50 -1.1 367,721 + EX31_RS01655 0.82 -2.3 367,722 - EX31_RS01655 0.82 +1.7 367,722 - EX31_RS01655 0.82 -1.5 367,725 + EX31_RS01655 0.84 -1.9 367,726 - EX31_RS01655 0.84 -2.7 367,726 - EX31_RS01655 0.84 +0.9 367,761 + +0.5 367,762 - +0.4 367,770 + -1.7 367,770 + +1.6 367,804 + -1.7 367,805 - +1.9 367,807 + +1.1 367,807 + -1.1 367,808 - +0.2 367,812 - +0.2 367,812 - -1.1 367,821 + -0.1 367,822 - -1.7 367,908 + EX31_RS01660 0.34 -0.5 367,909 - EX31_RS01660 0.34 +0.9 367,909 - EX31_RS01660 0.34 -0.1 367,948 + EX31_RS01660 0.50 -1.7 367,985 - EX31_RS01660 0.64 +3.3 368,021 - EX31_RS01660 0.78 -2.1 368,044 + EX31_RS01660 0.87 -2.8 368,090 - -2.3 368,126 - +3.1 368,126 - -0.1 368,126 - +1.5 368,704 - EX31_RS01670 0.22 -1.1 368,836 + EX31_RS01670 0.47 -1.9 368,837 - EX31_RS01670 0.47 +1.1 368,837 - EX31_RS01670 0.47 -1.4 368,837 - EX31_RS01670 0.47 +0.9 368,845 - EX31_RS01670 0.49 +0.6 368,908 - EX31_RS01670 0.60 -0.1 368,951 + EX31_RS01670 0.69 -2.1 368,952 - EX31_RS01670 0.69 -1.7 368,952 - EX31_RS01670 0.69 -0.3 368,970 + EX31_RS01670 0.72 -1.9 369,253 - EX31_RS01675 0.50 -0.2 369,253 - EX31_RS01675 0.50 +0.9 369,253 - EX31_RS01675 0.50 +0.1 369,317 + EX31_RS01675 0.73 +0.6 369,318 - EX31_RS01675 0.74 -0.3 369,354 + EX31_RS01675 0.87 +0.9 369,354 + EX31_RS01675 0.87 +0.7 369,354 + EX31_RS01675 0.87 +1.9 369,355 - EX31_RS01675 0.87 -3.2 369,355 - EX31_RS01675 0.87 -2.4 369,355 - EX31_RS01675 0.87 +0.9 369,355 - EX31_RS01675 0.87 -2.2 369,358 + EX31_RS01675 0.89 -1.9 369,358 + EX31_RS01675 0.89 +0.9 369,358 + EX31_RS01675 0.89 +1.8 369,358 + EX31_RS01675 0.89 +0.2 369,358 + EX31_RS01675 0.89 -2.5 369,359 - EX31_RS01675 0.89 +3.2 369,437 - -2.2 369,559 - -2.4 369,562 + -0.7 369,563 - +0.9 369,641 + -0.7 369,641 + -2.4 369,642 - +0.1 369,642 - +0.1 369,690 + +1.9 369,845 - -2.8 369,863 - +0.2 369,863 - +0.4 369,865 + +0.9 369,866 - +1.1 369,866 - -0.3 369,866 - +0.4 369,953 + +1.1 369,968 - -0.1 369,972 - -1.4 369,972 - +0.7 370,035 + +1.3 370,036 - +0.7 370,090 - +2.1
Or see this region's nucleotide sequence