Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01650 and EX31_RS25070 are separated by 408 nucleotides EX31_RS25070 and EX31_RS01655 are separated by 90 nucleotides EX31_RS01655 and EX31_RS01660 are separated by 62 nucleotides EX31_RS01660 and EX31_RS01665 are separated by 10 nucleotides EX31_RS01665 and EX31_RS01670 overlap by 8 nucleotides
EX31_RS01650: EX31_RS01650 - hypothetical protein, at 366,474 to 366,851
_RS01650
EX31_RS25070: EX31_RS25070 - DUF551 domain-containing protein, at 367,260 to 367,463
_RS25070
EX31_RS01655: EX31_RS01655 - hypothetical protein, at 367,554 to 367,757
_RS01655
EX31_RS01660: EX31_RS01660 - hypothetical protein, at 367,820 to 368,077
_RS01660
EX31_RS01665: EX31_RS01665 - lysis protein, at 368,088 to 368,594
_RS01665
EX31_RS01670: EX31_RS01670 - lysozyme, at 368,587 to 369,117
_RS01670
Position (kb) 367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 366.694 kb on - strand, within EX31_RS01650 at 366.746 kb on - strand, within EX31_RS01650 at 366.746 kb on - strand, within EX31_RS01650 at 366.761 kb on + strand, within EX31_RS01650 at 366.761 kb on + strand, within EX31_RS01650 at 366.774 kb on - strand, within EX31_RS01650 at 366.791 kb on + strand, within EX31_RS01650 at 366.849 kb on + strand at 366.936 kb on - strand at 366.952 kb on - strand at 366.963 kb on + strand at 366.964 kb on - strand at 366.964 kb on - strand at 367.153 kb on + strand at 367.153 kb on + strand at 367.154 kb on - strand at 367.173 kb on + strand at 367.174 kb on - strand at 367.174 kb on - strand at 367.174 kb on - strand at 367.174 kb on - strand at 367.228 kb on - strand at 367.253 kb on - strand at 367.262 kb on - strand at 367.262 kb on - strand at 367.315 kb on + strand, within EX31_RS25070 at 367.357 kb on - strand, within EX31_RS25070 at 367.357 kb on - strand, within EX31_RS25070 at 367.366 kb on + strand, within EX31_RS25070 at 367.394 kb on + strand, within EX31_RS25070 at 367.541 kb on + strand at 367.541 kb on + strand at 367.542 kb on - strand at 367.542 kb on - strand at 367.542 kb on - strand at 367.542 kb on - strand at 367.546 kb on - strand at 367.559 kb on - strand at 367.595 kb on - strand, within EX31_RS01655 at 367.657 kb on + strand, within EX31_RS01655 at 367.721 kb on + strand, within EX31_RS01655 at 367.722 kb on - strand, within EX31_RS01655 at 367.722 kb on - strand, within EX31_RS01655 at 367.725 kb on + strand, within EX31_RS01655 at 367.726 kb on - strand, within EX31_RS01655 at 367.726 kb on - strand, within EX31_RS01655 at 367.761 kb on + strand at 367.762 kb on - strand at 367.770 kb on + strand at 367.770 kb on + strand at 367.804 kb on + strand at 367.805 kb on - strand at 367.807 kb on + strand at 367.807 kb on + strand at 367.808 kb on - strand at 367.812 kb on - strand at 367.812 kb on - strand at 367.821 kb on + strand at 367.822 kb on - strand at 367.908 kb on + strand, within EX31_RS01660 at 367.909 kb on - strand, within EX31_RS01660 at 367.909 kb on - strand, within EX31_RS01660 at 367.948 kb on + strand, within EX31_RS01660 at 367.985 kb on - strand, within EX31_RS01660 at 368.021 kb on - strand, within EX31_RS01660 at 368.044 kb on + strand, within EX31_RS01660 at 368.090 kb on - strand at 368.126 kb on - strand at 368.126 kb on - strand at 368.126 kb on - strand at 368.704 kb on - strand, within EX31_RS01670
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 366,694 - EX31_RS01650 0.58 +0.4 366,746 - EX31_RS01650 0.72 +1.6 366,746 - EX31_RS01650 0.72 +1.3 366,761 + EX31_RS01650 0.76 -2.8 366,761 + EX31_RS01650 0.76 +0.5 366,774 - EX31_RS01650 0.79 -0.7 366,791 + EX31_RS01650 0.84 -0.7 366,849 + +3.9 366,936 - -1.1 366,952 - -0.1 366,963 + -1.1 366,964 - -1.4 366,964 - -0.1 367,153 + +0.3 367,153 + +2.4 367,154 - -0.7 367,173 + -1.1 367,174 - -1.8 367,174 - -2.5 367,174 - -1.4 367,174 - +2.1 367,228 - -2.1 367,253 - -0.5 367,262 - +1.5 367,262 - -0.3 367,315 + EX31_RS25070 0.27 -2.7 367,357 - EX31_RS25070 0.48 -0.7 367,357 - EX31_RS25070 0.48 +2.0 367,366 + EX31_RS25070 0.52 +1.5 367,394 + EX31_RS25070 0.66 -1.1 367,541 + -1.9 367,541 + +2.6 367,542 - -2.5 367,542 - -2.4 367,542 - -0.1 367,542 - +1.6 367,546 - -0.7 367,559 - -0.1 367,595 - EX31_RS01655 0.20 -1.7 367,657 + EX31_RS01655 0.50 -1.1 367,721 + EX31_RS01655 0.82 -2.3 367,722 - EX31_RS01655 0.82 +1.7 367,722 - EX31_RS01655 0.82 -1.5 367,725 + EX31_RS01655 0.84 -1.9 367,726 - EX31_RS01655 0.84 -2.7 367,726 - EX31_RS01655 0.84 +0.9 367,761 + +0.5 367,762 - +0.4 367,770 + -1.7 367,770 + +1.6 367,804 + -1.7 367,805 - +1.9 367,807 + +1.1 367,807 + -1.1 367,808 - +0.2 367,812 - +0.2 367,812 - -1.1 367,821 + -0.1 367,822 - -1.7 367,908 + EX31_RS01660 0.34 -0.5 367,909 - EX31_RS01660 0.34 +0.9 367,909 - EX31_RS01660 0.34 -0.1 367,948 + EX31_RS01660 0.50 -1.7 367,985 - EX31_RS01660 0.64 +3.3 368,021 - EX31_RS01660 0.78 -2.1 368,044 + EX31_RS01660 0.87 -2.8 368,090 - -2.3 368,126 - +3.1 368,126 - -0.1 368,126 - +1.5 368,704 - EX31_RS01670 0.22 -1.1
Or see this region's nucleotide sequence