Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01595 and EX31_RS01600 are separated by 10 nucleotides EX31_RS01600 and EX31_RS01605 are separated by 7 nucleotides EX31_RS01605 and EX31_RS01610 overlap by 4 nucleotides EX31_RS01610 and EX31_RS01615 are separated by 8 nucleotides EX31_RS01615 and EX31_RS01620 overlap by 8 nucleotides
EX31_RS01595: EX31_RS01595 - phage minor tail protein G, at 356,988 to 357,395
_RS01595
EX31_RS01600: EX31_RS01600 - tail fiber protein, at 357,406 to 358,143
_RS01600
EX31_RS01605: EX31_RS01605 - tail protein, at 358,151 to 358,555
_RS01605
EX31_RS01610: EX31_RS01610 - phage tail protein, at 358,552 to 359,103
_RS01610
EX31_RS01615: EX31_RS01615 - DNA breaking-rejoining protein, at 359,112 to 359,387
_RS01615
EX31_RS01620: EX31_RS01620 - DUF2190 family protein, at 359,380 to 359,706
_RS01620
Position (kb) 358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 357.344 kb on - strand, within EX31_RS01595 at 357.435 kb on + strand at 357.435 kb on + strand at 357.436 kb on - strand at 357.490 kb on - strand, within EX31_RS01600 at 357.511 kb on - strand, within EX31_RS01600 at 357.715 kb on - strand, within EX31_RS01600 at 357.849 kb on - strand, within EX31_RS01600 at 357.903 kb on + strand, within EX31_RS01600 at 357.904 kb on - strand, within EX31_RS01600 at 357.975 kb on - strand, within EX31_RS01600 at 358.070 kb on + strand at 358.144 kb on - strand at 358.158 kb on - strand at 358.161 kb on + strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.174 kb on - strand at 358.222 kb on - strand, within EX31_RS01605 at 358.227 kb on + strand, within EX31_RS01605 at 358.227 kb on + strand, within EX31_RS01605 at 358.228 kb on - strand, within EX31_RS01605 at 358.350 kb on - strand, within EX31_RS01605 at 358.423 kb on - strand, within EX31_RS01605 at 358.550 kb on + strand at 358.550 kb on + strand at 358.560 kb on + strand at 358.646 kb on + strand, within EX31_RS01610 at 358.646 kb on + strand, within EX31_RS01610 at 358.647 kb on - strand, within EX31_RS01610 at 358.657 kb on - strand, within EX31_RS01610 at 358.774 kb on - strand, within EX31_RS01610 at 359.058 kb on + strand at 359.103 kb on + strand at 359.103 kb on + strand at 359.103 kb on + strand at 359.168 kb on - strand, within EX31_RS01615 at 359.168 kb on - strand, within EX31_RS01615 at 359.168 kb on - strand, within EX31_RS01615 at 359.183 kb on - strand, within EX31_RS01615 at 359.183 kb on - strand, within EX31_RS01615 at 359.491 kb on - strand, within EX31_RS01620 at 359.493 kb on - strand, within EX31_RS01620 at 359.493 kb on - strand, within EX31_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 357,344 - EX31_RS01595 0.87 +0.4 357,435 + -1.1 357,435 + -1.1 357,436 - +0.4 357,490 - EX31_RS01600 0.11 -1.0 357,511 - EX31_RS01600 0.14 +2.2 357,715 - EX31_RS01600 0.42 -1.9 357,849 - EX31_RS01600 0.60 +2.9 357,903 + EX31_RS01600 0.67 -1.1 357,904 - EX31_RS01600 0.67 +0.7 357,975 - EX31_RS01600 0.77 +0.9 358,070 + +1.1 358,144 - +3.7 358,158 - -1.9 358,161 + +0.1 358,162 - -1.7 358,162 - -1.7 358,162 - +1.6 358,162 - -1.9 358,162 - -0.3 358,162 - +0.4 358,162 - +2.2 358,174 - -0.7 358,222 - EX31_RS01605 0.18 -1.1 358,227 + EX31_RS01605 0.19 -1.7 358,227 + EX31_RS01605 0.19 -2.9 358,228 - EX31_RS01605 0.19 -2.7 358,350 - EX31_RS01605 0.49 +2.2 358,423 - EX31_RS01605 0.67 -1.7 358,550 + -0.1 358,550 + -1.7 358,560 + -0.7 358,646 + EX31_RS01610 0.17 -1.9 358,646 + EX31_RS01610 0.17 +1.2 358,647 - EX31_RS01610 0.17 -1.1 358,657 - EX31_RS01610 0.19 +0.9 358,774 - EX31_RS01610 0.40 +1.9 359,058 + -0.2 359,103 + -1.9 359,103 + -0.7 359,103 + -1.1 359,168 - EX31_RS01615 0.20 +0.9 359,168 - EX31_RS01615 0.20 -3.7 359,168 - EX31_RS01615 0.20 +1.1 359,183 - EX31_RS01615 0.26 -1.1 359,183 - EX31_RS01615 0.26 -0.2 359,491 - EX31_RS01620 0.34 +1.4 359,493 - EX31_RS01620 0.35 +0.2 359,493 - EX31_RS01620 0.35 -1.9
Or see this region's nucleotide sequence