Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01425 and EX31_RS01430 are separated by 64 nucleotides EX31_RS01430 and EX31_RS01435 are separated by 113 nucleotides EX31_RS01435 and EX31_RS01440 are separated by 201 nucleotides
EX31_RS01425: EX31_RS01425 - class I fructose-bisphosphate aldolase, at 320,705 to 321,754
_RS01425
EX31_RS01430: EX31_RS01430 - type 1 glutamine amidotransferase domain-containing protein, at 321,819 to 322,499
_RS01430
EX31_RS01435: EX31_RS01435 - TetR/AcrR family transcriptional regulator, at 322,613 to 323,224
_RS01435
EX31_RS01440: EX31_RS01440 - molecular chaperone HscC, at 323,426 to 325,111
_RS01440
Position (kb) 321
322
323 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 320.873 kb on + strand, within EX31_RS01425 at 320.874 kb on - strand, within EX31_RS01425 at 320.975 kb on + strand, within EX31_RS01425 at 321.126 kb on - strand, within EX31_RS01425 at 321.126 kb on - strand, within EX31_RS01425 at 321.137 kb on + strand, within EX31_RS01425 at 321.137 kb on + strand, within EX31_RS01425 at 321.137 kb on + strand, within EX31_RS01425 at 321.138 kb on - strand, within EX31_RS01425 at 321.138 kb on - strand, within EX31_RS01425 at 321.153 kb on - strand, within EX31_RS01425 at 321.153 kb on - strand, within EX31_RS01425 at 321.240 kb on + strand, within EX31_RS01425 at 321.241 kb on - strand, within EX31_RS01425 at 321.241 kb on - strand, within EX31_RS01425 at 321.241 kb on - strand, within EX31_RS01425 at 321.305 kb on + strand, within EX31_RS01425 at 321.434 kb on - strand, within EX31_RS01425 at 321.434 kb on - strand, within EX31_RS01425 at 321.542 kb on + strand, within EX31_RS01425 at 321.542 kb on + strand, within EX31_RS01425 at 321.543 kb on - strand, within EX31_RS01425 at 321.543 kb on - strand, within EX31_RS01425 at 321.543 kb on - strand, within EX31_RS01425 at 321.565 kb on + strand, within EX31_RS01425 at 321.614 kb on - strand, within EX31_RS01425 at 321.726 kb on - strand at 321.726 kb on - strand at 321.771 kb on + strand at 321.807 kb on + strand at 321.840 kb on + strand at 321.841 kb on - strand at 321.906 kb on + strand, within EX31_RS01430 at 321.907 kb on - strand, within EX31_RS01430 at 321.910 kb on + strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.911 kb on - strand, within EX31_RS01430 at 321.984 kb on + strand, within EX31_RS01430 at 322.047 kb on + strand, within EX31_RS01430 at 322.163 kb on + strand, within EX31_RS01430 at 322.164 kb on - strand, within EX31_RS01430 at 322.398 kb on - strand, within EX31_RS01430 at 322.406 kb on - strand, within EX31_RS01430 at 322.409 kb on - strand, within EX31_RS01430 at 322.409 kb on - strand, within EX31_RS01430 at 322.506 kb on + strand at 322.614 kb on + strand at 322.615 kb on - strand at 322.631 kb on - strand at 322.673 kb on - strand at 322.673 kb on - strand at 322.673 kb on - strand at 322.673 kb on - strand at 322.676 kb on - strand, within EX31_RS01435 at 322.811 kb on - strand, within EX31_RS01435 at 322.898 kb on - strand, within EX31_RS01435 at 322.898 kb on - strand, within EX31_RS01435 at 322.898 kb on - strand, within EX31_RS01435 at 322.912 kb on - strand, within EX31_RS01435 at 322.945 kb on - strand, within EX31_RS01435 at 322.945 kb on - strand, within EX31_RS01435 at 322.945 kb on - strand, within EX31_RS01435 at 322.945 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.011 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.068 kb on - strand, within EX31_RS01435 at 323.071 kb on - strand, within EX31_RS01435 at 323.074 kb on - strand, within EX31_RS01435 at 323.074 kb on - strand, within EX31_RS01435 at 323.180 kb on - strand at 323.396 kb on + strand at 323.396 kb on + strand at 323.397 kb on - strand at 323.398 kb on + strand at 323.399 kb on - strand at 323.399 kb on - strand at 323.399 kb on - strand at 323.433 kb on + strand at 323.433 kb on + strand at 323.434 kb on - strand at 323.439 kb on + strand at 323.439 kb on + strand at 323.439 kb on + strand at 323.445 kb on + strand at 323.446 kb on - strand at 323.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 320,873 + EX31_RS01425 0.16 -0.6 320,874 - EX31_RS01425 0.16 +0.9 320,975 + EX31_RS01425 0.26 +1.3 321,126 - EX31_RS01425 0.40 -2.1 321,126 - EX31_RS01425 0.40 +0.6 321,137 + EX31_RS01425 0.41 +0.1 321,137 + EX31_RS01425 0.41 +0.3 321,137 + EX31_RS01425 0.41 +3.4 321,138 - EX31_RS01425 0.41 +1.2 321,138 - EX31_RS01425 0.41 +3.5 321,153 - EX31_RS01425 0.43 +0.5 321,153 - EX31_RS01425 0.43 +0.5 321,240 + EX31_RS01425 0.51 -0.0 321,241 - EX31_RS01425 0.51 -0.2 321,241 - EX31_RS01425 0.51 +0.1 321,241 - EX31_RS01425 0.51 +1.5 321,305 + EX31_RS01425 0.57 +0.0 321,434 - EX31_RS01425 0.69 +0.6 321,434 - EX31_RS01425 0.69 -2.8 321,542 + EX31_RS01425 0.80 -0.7 321,542 + EX31_RS01425 0.80 +1.1 321,543 - EX31_RS01425 0.80 -1.1 321,543 - EX31_RS01425 0.80 +1.2 321,543 - EX31_RS01425 0.80 -1.9 321,565 + EX31_RS01425 0.82 -0.7 321,614 - EX31_RS01425 0.87 -1.9 321,726 - -0.7 321,726 - +0.7 321,771 + -0.1 321,807 + +1.0 321,840 + -2.1 321,841 - -0.7 321,906 + EX31_RS01430 0.13 -1.7 321,907 - EX31_RS01430 0.13 -1.7 321,910 + EX31_RS01430 0.13 -1.1 321,911 - EX31_RS01430 0.14 -0.7 321,911 - EX31_RS01430 0.14 +1.9 321,911 - EX31_RS01430 0.14 -1.1 321,911 - EX31_RS01430 0.14 -1.7 321,911 - EX31_RS01430 0.14 +0.0 321,911 - EX31_RS01430 0.14 -2.1 321,984 + EX31_RS01430 0.24 -1.1 322,047 + EX31_RS01430 0.33 +1.5 322,163 + EX31_RS01430 0.51 +2.1 322,164 - EX31_RS01430 0.51 -1.4 322,398 - EX31_RS01430 0.85 +0.9 322,406 - EX31_RS01430 0.86 -0.1 322,409 - EX31_RS01430 0.87 -1.9 322,409 - EX31_RS01430 0.87 +1.3 322,506 + +1.6 322,614 + -0.1 322,615 - +1.3 322,631 - -0.4 322,673 - -1.2 322,673 - +0.5 322,673 - -1.7 322,673 - -3.0 322,676 - EX31_RS01435 0.10 -2.7 322,811 - EX31_RS01435 0.32 -0.4 322,898 - EX31_RS01435 0.47 -0.2 322,898 - EX31_RS01435 0.47 -1.6 322,898 - EX31_RS01435 0.47 -4.2 322,912 - EX31_RS01435 0.49 -1.1 322,945 - EX31_RS01435 0.54 +0.7 322,945 - EX31_RS01435 0.54 -0.0 322,945 - EX31_RS01435 0.54 +1.0 322,945 - EX31_RS01435 0.54 +0.5 323,011 - EX31_RS01435 0.65 -0.5 323,011 - EX31_RS01435 0.65 -2.3 323,011 - EX31_RS01435 0.65 +1.2 323,011 - EX31_RS01435 0.65 +0.0 323,011 - EX31_RS01435 0.65 -2.1 323,011 - EX31_RS01435 0.65 +0.2 323,011 - EX31_RS01435 0.65 +1.0 323,011 - EX31_RS01435 0.65 +1.2 323,068 - EX31_RS01435 0.74 -0.1 323,068 - EX31_RS01435 0.74 -0.4 323,068 - EX31_RS01435 0.74 -1.1 323,068 - EX31_RS01435 0.74 -0.5 323,068 - EX31_RS01435 0.74 +1.4 323,068 - EX31_RS01435 0.74 +0.3 323,068 - EX31_RS01435 0.74 +2.6 323,068 - EX31_RS01435 0.74 -1.4 323,068 - EX31_RS01435 0.74 +0.5 323,068 - EX31_RS01435 0.74 -0.5 323,068 - EX31_RS01435 0.74 +0.5 323,071 - EX31_RS01435 0.75 -1.9 323,074 - EX31_RS01435 0.75 -1.7 323,074 - EX31_RS01435 0.75 +0.3 323,180 - -1.6 323,396 + +0.8 323,396 + +0.9 323,397 - -3.1 323,398 + -0.1 323,399 - -2.3 323,399 - -1.1 323,399 - -2.9 323,433 + -1.1 323,433 + -1.1 323,434 - -1.4 323,439 + +0.1 323,439 + +0.9 323,439 + -1.1 323,445 + +0.6 323,446 - -2.3 323,446 - +0.4
Or see this region's nucleotide sequence