Strain Fitness in Rahnella sp. WP5 around EX31_RS01235

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01230 and EX31_RS01235 are separated by 44 nucleotidesEX31_RS01235 and EX31_RS01240 are separated by 229 nucleotides EX31_RS01230: EX31_RS01230 - arsenic transporter, at 273,319 to 274,608 _RS01230 EX31_RS01235: EX31_RS01235 - metalloregulator ArsR/SmtB family transcription factor, at 274,653 to 274,973 _RS01235 EX31_RS01240: EX31_RS01240 - glycoside hydrolase family 10 protein, at 275,203 to 276,588 _RS01240 Position (kb) 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 273.658 kb on + strand, within EX31_RS01230at 273.658 kb on + strand, within EX31_RS01230at 273.729 kb on - strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.801 kb on + strand, within EX31_RS01230at 273.802 kb on - strand, within EX31_RS01230at 273.828 kb on + strand, within EX31_RS01230at 273.828 kb on + strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.830 kb on + strand, within EX31_RS01230at 273.831 kb on - strand, within EX31_RS01230at 273.831 kb on - strand, within EX31_RS01230at 273.988 kb on - strand, within EX31_RS01230at 273.992 kb on + strand, within EX31_RS01230at 273.992 kb on + strand, within EX31_RS01230at 274.125 kb on + strand, within EX31_RS01230at 274.125 kb on + strand, within EX31_RS01230at 274.199 kb on - strand, within EX31_RS01230at 274.314 kb on + strand, within EX31_RS01230at 274.314 kb on + strand, within EX31_RS01230at 274.324 kb on - strand, within EX31_RS01230at 274.324 kb on - strand, within EX31_RS01230at 274.327 kb on + strand, within EX31_RS01230at 274.328 kb on - strand, within EX31_RS01230at 274.328 kb on - strand, within EX31_RS01230at 274.414 kb on - strand, within EX31_RS01230at 274.454 kb on - strand, within EX31_RS01230at 274.454 kb on - strand, within EX31_RS01230at 274.593 kb on + strandat 274.818 kb on + strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.875 kb on - strand, within EX31_RS01235at 274.974 kb on - strandat 274.974 kb on - strandat 275.063 kb on + strandat 275.171 kb on - strandat 275.250 kb on + strandat 275.327 kb on + strandat 275.484 kb on + strand, within EX31_RS01240at 275.562 kb on + strand, within EX31_RS01240at 275.562 kb on + strand, within EX31_RS01240at 275.563 kb on - strand, within EX31_RS01240at 275.580 kb on + strand, within EX31_RS01240at 275.597 kb on + strand, within EX31_RS01240at 275.597 kb on + strand, within EX31_RS01240at 275.650 kb on - strand, within EX31_RS01240at 275.700 kb on + strand, within EX31_RS01240at 275.701 kb on - strand, within EX31_RS01240at 275.748 kb on + strand, within EX31_RS01240at 275.892 kb on + strand, within EX31_RS01240

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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273,658 + EX31_RS01230 0.26 -1.7
273,658 + EX31_RS01230 0.26 -1.1
273,729 - EX31_RS01230 0.32 -1.1
273,740 + EX31_RS01230 0.33 -1.7
273,740 + EX31_RS01230 0.33 +1.3
273,740 + EX31_RS01230 0.33 -1.7
273,740 + EX31_RS01230 0.33 -1.4
273,741 - EX31_RS01230 0.33 -2.3
273,741 - EX31_RS01230 0.33 -3.0
273,741 - EX31_RS01230 0.33 +2.7
273,741 - EX31_RS01230 0.33 +4.5
273,801 + EX31_RS01230 0.37 +4.4
273,802 - EX31_RS01230 0.37 -0.5
273,828 + EX31_RS01230 0.39 +1.3
273,828 + EX31_RS01230 0.39 -1.1
273,829 - EX31_RS01230 0.40 +0.4
273,829 - EX31_RS01230 0.40 +0.1
273,829 - EX31_RS01230 0.40 -2.5
273,829 - EX31_RS01230 0.40 +1.8
273,830 + EX31_RS01230 0.40 -1.4
273,831 - EX31_RS01230 0.40 -1.7
273,831 - EX31_RS01230 0.40 +1.8
273,988 - EX31_RS01230 0.52 -1.6
273,992 + EX31_RS01230 0.52 -1.1
273,992 + EX31_RS01230 0.52 +0.9
274,125 + EX31_RS01230 0.62 -1.1
274,125 + EX31_RS01230 0.62 -1.9
274,199 - EX31_RS01230 0.68 +2.1
274,314 + EX31_RS01230 0.77 +1.8
274,314 + EX31_RS01230 0.77 -0.7
274,324 - EX31_RS01230 0.78 -2.1
274,324 - EX31_RS01230 0.78 -1.1
274,327 + EX31_RS01230 0.78 +0.9
274,328 - EX31_RS01230 0.78 -2.3
274,328 - EX31_RS01230 0.78 -1.4
274,414 - EX31_RS01230 0.85 -2.7
274,454 - EX31_RS01230 0.88 +2.3
274,454 - EX31_RS01230 0.88 -3.2
274,593 + +0.3
274,818 + EX31_RS01235 0.51 +0.4
274,819 - EX31_RS01235 0.52 +0.9
274,819 - EX31_RS01235 0.52 -0.2
274,819 - EX31_RS01235 0.52 -0.1
274,819 - EX31_RS01235 0.52 +1.5
274,819 - EX31_RS01235 0.52 +0.4
274,875 - EX31_RS01235 0.69 +0.6
274,974 - +0.5
274,974 - +0.0
275,063 + -2.1
275,171 - -0.1
275,250 + -0.4
275,327 + +0.3
275,484 + EX31_RS01240 0.20 +0.1
275,562 + EX31_RS01240 0.26 -2.4
275,562 + EX31_RS01240 0.26 -3.1
275,563 - EX31_RS01240 0.26 +3.0
275,580 + EX31_RS01240 0.27 +1.7
275,597 + EX31_RS01240 0.28 -0.1
275,597 + EX31_RS01240 0.28 -0.7
275,650 - EX31_RS01240 0.32 -1.7
275,700 + EX31_RS01240 0.36 +0.2
275,701 - EX31_RS01240 0.36 -2.1
275,748 + EX31_RS01240 0.39 -3.3
275,892 + EX31_RS01240 0.50 -0.9

Or see this region's nucleotide sequence