Strain Fitness in Rahnella sp. WP5 around EX31_RS01085

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01080 and EX31_RS01085 overlap by 4 nucleotidesEX31_RS01085 and EX31_RS01090 overlap by 4 nucleotidesEX31_RS01090 and EX31_RS01095 overlap by 4 nucleotides EX31_RS01080: EX31_RS01080 - metal ABC transporter substrate-binding protein, at 235,343 to 236,284 _RS01080 EX31_RS01085: EX31_RS01085 - ATP-binding cassette domain-containing protein, at 236,281 to 237,060 _RS01085 EX31_RS01090: EX31_RS01090 - metal ABC transporter permease, at 237,057 to 237,911 _RS01090 EX31_RS01095: EX31_RS01095 - metal ABC transporter permease, at 237,908 to 238,762 _RS01095 Position (kb) 236 237 238Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 235.290 kb on + strandat 235.292 kb on + strandat 235.292 kb on + strandat 235.303 kb on + strandat 235.371 kb on + strandat 235.379 kb on + strandat 235.543 kb on - strand, within EX31_RS01080at 235.645 kb on + strand, within EX31_RS01080at 235.732 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.749 kb on - strand, within EX31_RS01080at 235.802 kb on + strand, within EX31_RS01080at 235.802 kb on + strand, within EX31_RS01080at 235.835 kb on + strand, within EX31_RS01080at 235.860 kb on - strand, within EX31_RS01080at 235.874 kb on - strand, within EX31_RS01080at 235.982 kb on + strand, within EX31_RS01080at 235.997 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.228 kb on + strandat 236.228 kb on + strandat 236.228 kb on + strandat 236.228 kb on + strandat 236.229 kb on - strandat 236.316 kb on + strandat 236.316 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.418 kb on + strand, within EX31_RS01085at 236.433 kb on + strand, within EX31_RS01085at 236.433 kb on + strand, within EX31_RS01085at 236.527 kb on + strand, within EX31_RS01085at 236.527 kb on + strand, within EX31_RS01085at 236.528 kb on - strand, within EX31_RS01085at 236.641 kb on - strand, within EX31_RS01085at 236.965 kb on - strand, within EX31_RS01085at 237.012 kb on + strandat 237.012 kb on + strandat 237.088 kb on - strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.094 kb on - strandat 237.095 kb on + strandat 237.095 kb on + strandat 237.096 kb on - strandat 237.276 kb on - strand, within EX31_RS01090at 237.379 kb on + strand, within EX31_RS01090at 237.434 kb on + strand, within EX31_RS01090at 237.463 kb on + strand, within EX31_RS01090at 237.476 kb on + strand, within EX31_RS01090at 237.509 kb on + strand, within EX31_RS01090at 237.602 kb on + strand, within EX31_RS01090at 237.631 kb on + strand, within EX31_RS01090at 237.691 kb on - strand, within EX31_RS01090at 237.778 kb on - strand, within EX31_RS01090at 237.890 kb on + strandat 237.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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235,290 + +0.5
235,292 + +0.4
235,292 + +0.5
235,303 + -0.4
235,371 + -0.2
235,379 + -2.4
235,543 - EX31_RS01080 0.21 +1.0
235,645 + EX31_RS01080 0.32 -2.6
235,732 + EX31_RS01080 0.41 -0.0
235,748 + EX31_RS01080 0.43 +1.8
235,748 + EX31_RS01080 0.43 -0.5
235,748 + EX31_RS01080 0.43 -0.9
235,748 + EX31_RS01080 0.43 -1.6
235,748 + EX31_RS01080 0.43 +0.1
235,749 - EX31_RS01080 0.43 -2.2
235,802 + EX31_RS01080 0.49 -1.6
235,802 + EX31_RS01080 0.49 -0.0
235,835 + EX31_RS01080 0.52 +0.6
235,860 - EX31_RS01080 0.55 -1.6
235,874 - EX31_RS01080 0.56 +1.4
235,982 + EX31_RS01080 0.68 -2.4
235,997 + EX31_RS01080 0.69 -2.2
236,015 + EX31_RS01080 0.71 +1.4
236,015 + EX31_RS01080 0.71 -1.0
236,015 + EX31_RS01080 0.71 +0.0
236,186 + EX31_RS01080 0.89 -0.6
236,186 + EX31_RS01080 0.89 +0.4
236,186 + EX31_RS01080 0.89 -0.1
236,186 + EX31_RS01080 0.89 +0.6
236,228 + +0.5
236,228 + -0.4
236,228 + +2.0
236,228 + -1.6
236,229 - -1.6
236,316 + -0.0
236,316 + -2.0
236,329 + +1.2
236,329 + -0.1
236,329 + -0.6
236,329 + +3.2
236,329 + +2.3
236,329 + -1.4
236,418 + EX31_RS01085 0.18 +1.0
236,433 + EX31_RS01085 0.19 +2.5
236,433 + EX31_RS01085 0.19 +2.0
236,527 + EX31_RS01085 0.32 +3.0
236,527 + EX31_RS01085 0.32 -0.0
236,528 - EX31_RS01085 0.32 +1.9
236,641 - EX31_RS01085 0.46 +1.0
236,965 - EX31_RS01085 0.88 +2.1
237,012 + -2.5
237,012 + -2.0
237,088 - -1.6
237,093 + -3.7
237,093 + +0.5
237,093 + +1.0
237,093 + -2.5
237,093 + -0.5
237,093 + +1.0
237,093 + +1.7
237,093 + +1.3
237,093 + +1.3
237,093 + +1.0
237,093 + -2.7
237,093 + +1.6
237,093 + -0.6
237,093 + -0.0
237,093 + +0.4
237,093 + +1.0
237,093 + -0.6
237,093 + -1.0
237,093 + -0.0
237,093 + +1.4
237,094 - -1.6
237,095 + -1.4
237,095 + +0.8
237,096 - -0.0
237,276 - EX31_RS01090 0.26 -1.0
237,379 + EX31_RS01090 0.38 -1.0
237,434 + EX31_RS01090 0.44 -1.0
237,463 + EX31_RS01090 0.47 -1.0
237,476 + EX31_RS01090 0.49 +1.7
237,509 + EX31_RS01090 0.53 +1.5
237,602 + EX31_RS01090 0.64 -2.6
237,631 + EX31_RS01090 0.67 -1.8
237,691 - EX31_RS01090 0.74 +0.7
237,778 - EX31_RS01090 0.84 -1.4
237,890 + -0.0
237,956 - +0.4

Or see this region's nucleotide sequence