Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01000 and EX31_RS01005 overlap by 4 nucleotides EX31_RS01005 and EX31_RS01010 are separated by 6 nucleotides
EX31_RS01000: EX31_RS01000 - type VI secretion system baseplate subunit TssK, at 215,565 to 216,959
_RS01000
EX31_RS01005: EX31_RS01005 - DotU family type IV/VI secretion system protein, at 216,956 to 217,582
_RS01005
EX31_RS01010: EX31_RS01010 - hypothetical protein, at 217,589 to 221,026
_RS01010
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 216.031 kb on - strand, within EX31_RS01000 at 216.031 kb on - strand, within EX31_RS01000 at 216.031 kb on - strand, within EX31_RS01000 at 216.200 kb on + strand, within EX31_RS01000 at 216.201 kb on - strand, within EX31_RS01000 at 216.243 kb on + strand, within EX31_RS01000 at 216.385 kb on - strand, within EX31_RS01000 at 216.484 kb on - strand, within EX31_RS01000 at 216.484 kb on - strand, within EX31_RS01000 at 216.537 kb on - strand, within EX31_RS01000 at 216.537 kb on - strand, within EX31_RS01000 at 216.537 kb on - strand, within EX31_RS01000 at 216.569 kb on + strand, within EX31_RS01000 at 216.570 kb on - strand, within EX31_RS01000 at 216.570 kb on - strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.574 kb on - strand, within EX31_RS01000 at 216.574 kb on - strand, within EX31_RS01000 at 216.574 kb on - strand, within EX31_RS01000 at 216.574 kb on - strand, within EX31_RS01000 at 216.812 kb on - strand, within EX31_RS01000 at 216.835 kb on - strand at 216.939 kb on - strand at 216.940 kb on + strand at 216.941 kb on - strand at 216.941 kb on - strand at 217.068 kb on + strand, within EX31_RS01005 at 217.288 kb on + strand, within EX31_RS01005 at 217.305 kb on + strand, within EX31_RS01005 at 217.305 kb on + strand, within EX31_RS01005 at 217.345 kb on + strand, within EX31_RS01005 at 217.345 kb on + strand, within EX31_RS01005 at 217.494 kb on + strand, within EX31_RS01005 at 217.505 kb on - strand, within EX31_RS01005 at 217.516 kb on - strand, within EX31_RS01005 at 217.538 kb on + strand at 217.585 kb on + strand at 217.868 kb on - strand at 217.907 kb on - strand at 217.908 kb on + strand at 218.013 kb on + strand, within EX31_RS01010 at 218.215 kb on + strand, within EX31_RS01010 at 218.270 kb on + strand, within EX31_RS01010 at 218.270 kb on + strand, within EX31_RS01010 at 218.270 kb on + strand, within EX31_RS01010 at 218.279 kb on - strand, within EX31_RS01010 at 218.360 kb on + strand, within EX31_RS01010 at 218.552 kb on + strand, within EX31_RS01010
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 216,031 - EX31_RS01000 0.33 -1.8 216,031 - EX31_RS01000 0.33 +0.1 216,031 - EX31_RS01000 0.33 +1.7 216,200 + EX31_RS01000 0.46 +1.0 216,201 - EX31_RS01000 0.46 -1.6 216,243 + EX31_RS01000 0.49 -1.3 216,385 - EX31_RS01000 0.59 -1.8 216,484 - EX31_RS01000 0.66 -1.8 216,484 - EX31_RS01000 0.66 -2.2 216,537 - EX31_RS01000 0.70 +0.7 216,537 - EX31_RS01000 0.70 +0.3 216,537 - EX31_RS01000 0.70 +0.8 216,569 + EX31_RS01000 0.72 -1.3 216,570 - EX31_RS01000 0.72 -0.0 216,570 - EX31_RS01000 0.72 -1.0 216,573 + EX31_RS01000 0.72 -0.0 216,573 + EX31_RS01000 0.72 -0.6 216,573 + EX31_RS01000 0.72 -1.3 216,573 + EX31_RS01000 0.72 +0.3 216,573 + EX31_RS01000 0.72 -0.9 216,573 + EX31_RS01000 0.72 -3.0 216,573 + EX31_RS01000 0.72 +0.9 216,574 - EX31_RS01000 0.72 -2.3 216,574 - EX31_RS01000 0.72 -1.6 216,574 - EX31_RS01000 0.72 -2.5 216,574 - EX31_RS01000 0.72 -0.0 216,812 - EX31_RS01000 0.89 -0.2 216,835 - -0.6 216,939 - -1.0 216,940 + -1.7 216,941 - -2.1 216,941 - -2.0 217,068 + EX31_RS01005 0.18 -2.2 217,288 + EX31_RS01005 0.53 +1.0 217,305 + EX31_RS01005 0.56 -1.3 217,305 + EX31_RS01005 0.56 -0.0 217,345 + EX31_RS01005 0.62 -0.0 217,345 + EX31_RS01005 0.62 -1.6 217,494 + EX31_RS01005 0.86 -1.6 217,505 - EX31_RS01005 0.88 -2.5 217,516 - EX31_RS01005 0.89 -0.6 217,538 + +3.6 217,585 + +1.7 217,868 - -0.7 217,907 - -2.0 217,908 + -0.0 218,013 + EX31_RS01010 0.12 -1.0 218,215 + EX31_RS01010 0.18 +0.3 218,270 + EX31_RS01010 0.20 +0.5 218,270 + EX31_RS01010 0.20 -0.0 218,270 + EX31_RS01010 0.20 -0.2 218,279 - EX31_RS01010 0.20 -0.0 218,360 + EX31_RS01010 0.22 -1.6 218,552 + EX31_RS01010 0.28 -2.2
Or see this region's nucleotide sequence