Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00990 and EX31_RS00995 overlap by 4 nucleotides EX31_RS00995 and EX31_RS01000 overlap by 1 nucleotides EX31_RS01000 and EX31_RS01005 overlap by 4 nucleotides EX31_RS01005 and EX31_RS01010 are separated by 6 nucleotides
EX31_RS00990: EX31_RS00990 - type VI secretion system protein TssA, at 213,929 to 214,993
_RS00990
EX31_RS00995: EX31_RS00995 - type VI secretion lipoprotein TssJ, at 214,990 to 215,565
_RS00995
EX31_RS01000: EX31_RS01000 - type VI secretion system baseplate subunit TssK, at 215,565 to 216,959
_RS01000
EX31_RS01005: EX31_RS01005 - DotU family type IV/VI secretion system protein, at 216,956 to 217,582
_RS01005
EX31_RS01010: EX31_RS01010 - hypothetical protein, at 217,589 to 221,026
_RS01010
Position (kb) 215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 214.580 kb on + strand, within EX31_RS00990 at 214.581 kb on - strand, within EX31_RS00990 at 214.630 kb on + strand, within EX31_RS00990 at 214.716 kb on + strand, within EX31_RS00990 at 214.716 kb on + strand, within EX31_RS00990 at 214.717 kb on - strand, within EX31_RS00990 at 214.717 kb on - strand, within EX31_RS00990 at 214.717 kb on - strand, within EX31_RS00990 at 214.717 kb on - strand, within EX31_RS00990 at 214.720 kb on - strand, within EX31_RS00990 at 214.720 kb on - strand, within EX31_RS00990 at 214.768 kb on + strand, within EX31_RS00990 at 214.768 kb on + strand, within EX31_RS00990 at 214.768 kb on + strand, within EX31_RS00990 at 214.900 kb on + strand at 214.948 kb on + strand at 214.949 kb on - strand at 214.968 kb on + strand at 214.968 kb on + strand at 214.969 kb on - strand at 215.021 kb on + strand at 215.181 kb on + strand, within EX31_RS00995 at 215.181 kb on + strand, within EX31_RS00995 at 215.182 kb on - strand, within EX31_RS00995 at 215.182 kb on - strand, within EX31_RS00995 at 215.186 kb on + strand, within EX31_RS00995 at 215.186 kb on + strand, within EX31_RS00995 at 215.187 kb on - strand, within EX31_RS00995 at 215.190 kb on - strand, within EX31_RS00995 at 215.196 kb on - strand, within EX31_RS00995 at 215.196 kb on - strand, within EX31_RS00995 at 215.223 kb on + strand, within EX31_RS00995 at 215.228 kb on + strand, within EX31_RS00995 at 215.306 kb on - strand, within EX31_RS00995 at 215.387 kb on - strand, within EX31_RS00995 at 215.387 kb on - strand, within EX31_RS00995 at 215.390 kb on - strand, within EX31_RS00995 at 215.607 kb on + strand at 215.689 kb on - strand at 215.690 kb on + strand at 215.714 kb on + strand, within EX31_RS01000 at 215.714 kb on + strand, within EX31_RS01000 at 215.714 kb on + strand, within EX31_RS01000 at 215.718 kb on - strand, within EX31_RS01000 at 215.768 kb on + strand, within EX31_RS01000 at 215.769 kb on - strand, within EX31_RS01000 at 216.031 kb on - strand, within EX31_RS01000 at 216.031 kb on - strand, within EX31_RS01000 at 216.031 kb on - strand, within EX31_RS01000 at 216.200 kb on + strand, within EX31_RS01000 at 216.201 kb on - strand, within EX31_RS01000 at 216.243 kb on + strand, within EX31_RS01000 at 216.385 kb on - strand, within EX31_RS01000 at 216.484 kb on - strand, within EX31_RS01000 at 216.484 kb on - strand, within EX31_RS01000 at 216.537 kb on - strand, within EX31_RS01000 at 216.537 kb on - strand, within EX31_RS01000 at 216.537 kb on - strand, within EX31_RS01000 at 216.569 kb on + strand, within EX31_RS01000 at 216.570 kb on - strand, within EX31_RS01000 at 216.570 kb on - strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.573 kb on + strand, within EX31_RS01000 at 216.574 kb on - strand, within EX31_RS01000 at 216.574 kb on - strand, within EX31_RS01000 at 216.574 kb on - strand, within EX31_RS01000 at 216.574 kb on - strand, within EX31_RS01000 at 216.812 kb on - strand, within EX31_RS01000 at 216.835 kb on - strand at 216.939 kb on - strand at 216.940 kb on + strand at 216.941 kb on - strand at 216.941 kb on - strand at 217.068 kb on + strand, within EX31_RS01005 at 217.288 kb on + strand, within EX31_RS01005 at 217.305 kb on + strand, within EX31_RS01005 at 217.305 kb on + strand, within EX31_RS01005 at 217.345 kb on + strand, within EX31_RS01005 at 217.345 kb on + strand, within EX31_RS01005 at 217.494 kb on + strand, within EX31_RS01005 at 217.505 kb on - strand, within EX31_RS01005 at 217.516 kb on - strand, within EX31_RS01005 at 217.538 kb on + strand at 217.585 kb on + strand at 217.868 kb on - strand at 217.907 kb on - strand at 217.908 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 214,580 + EX31_RS00990 0.61 -2.5 214,581 - EX31_RS00990 0.61 +2.4 214,630 + EX31_RS00990 0.66 +1.4 214,716 + EX31_RS00990 0.74 +2.4 214,716 + EX31_RS00990 0.74 -1.0 214,717 - EX31_RS00990 0.74 -0.0 214,717 - EX31_RS00990 0.74 +2.1 214,717 - EX31_RS00990 0.74 -2.2 214,717 - EX31_RS00990 0.74 +1.0 214,720 - EX31_RS00990 0.74 +0.3 214,720 - EX31_RS00990 0.74 -2.3 214,768 + EX31_RS00990 0.79 -2.3 214,768 + EX31_RS00990 0.79 +1.5 214,768 + EX31_RS00990 0.79 +1.0 214,900 + -0.0 214,948 + +1.6 214,949 - -1.0 214,968 + -0.6 214,968 + +1.9 214,969 - +1.2 215,021 + -0.3 215,181 + EX31_RS00995 0.33 +3.1 215,181 + EX31_RS00995 0.33 -0.6 215,182 - EX31_RS00995 0.33 +1.4 215,182 - EX31_RS00995 0.33 -2.0 215,186 + EX31_RS00995 0.34 -0.4 215,186 + EX31_RS00995 0.34 +1.0 215,187 - EX31_RS00995 0.34 -3.1 215,190 - EX31_RS00995 0.35 +0.6 215,196 - EX31_RS00995 0.36 +1.0 215,196 - EX31_RS00995 0.36 -0.6 215,223 + EX31_RS00995 0.40 +1.1 215,228 + EX31_RS00995 0.41 -0.4 215,306 - EX31_RS00995 0.55 -1.0 215,387 - EX31_RS00995 0.69 -0.0 215,387 - EX31_RS00995 0.69 -2.3 215,390 - EX31_RS00995 0.69 +2.7 215,607 + +1.9 215,689 - -1.6 215,690 + +1.7 215,714 + EX31_RS01000 0.11 -1.6 215,714 + EX31_RS01000 0.11 -1.3 215,714 + EX31_RS01000 0.11 -1.8 215,718 - EX31_RS01000 0.11 -1.6 215,768 + EX31_RS01000 0.15 -3.0 215,769 - EX31_RS01000 0.15 +2.9 216,031 - EX31_RS01000 0.33 -1.8 216,031 - EX31_RS01000 0.33 +0.1 216,031 - EX31_RS01000 0.33 +1.7 216,200 + EX31_RS01000 0.46 +1.0 216,201 - EX31_RS01000 0.46 -1.6 216,243 + EX31_RS01000 0.49 -1.3 216,385 - EX31_RS01000 0.59 -1.8 216,484 - EX31_RS01000 0.66 -1.8 216,484 - EX31_RS01000 0.66 -2.2 216,537 - EX31_RS01000 0.70 +0.7 216,537 - EX31_RS01000 0.70 +0.3 216,537 - EX31_RS01000 0.70 +0.8 216,569 + EX31_RS01000 0.72 -1.3 216,570 - EX31_RS01000 0.72 -0.0 216,570 - EX31_RS01000 0.72 -1.0 216,573 + EX31_RS01000 0.72 -0.0 216,573 + EX31_RS01000 0.72 -0.6 216,573 + EX31_RS01000 0.72 -1.3 216,573 + EX31_RS01000 0.72 +0.3 216,573 + EX31_RS01000 0.72 -0.9 216,573 + EX31_RS01000 0.72 -3.0 216,573 + EX31_RS01000 0.72 +0.9 216,574 - EX31_RS01000 0.72 -2.3 216,574 - EX31_RS01000 0.72 -1.6 216,574 - EX31_RS01000 0.72 -2.5 216,574 - EX31_RS01000 0.72 -0.0 216,812 - EX31_RS01000 0.89 -0.2 216,835 - -0.6 216,939 - -1.0 216,940 + -1.7 216,941 - -2.1 216,941 - -2.0 217,068 + EX31_RS01005 0.18 -2.2 217,288 + EX31_RS01005 0.53 +1.0 217,305 + EX31_RS01005 0.56 -1.3 217,305 + EX31_RS01005 0.56 -0.0 217,345 + EX31_RS01005 0.62 -0.0 217,345 + EX31_RS01005 0.62 -1.6 217,494 + EX31_RS01005 0.86 -1.6 217,505 - EX31_RS01005 0.88 -2.5 217,516 - EX31_RS01005 0.89 -0.6 217,538 + +3.6 217,585 + +1.7 217,868 - -0.7 217,907 - -2.0 217,908 + -0.0
Or see this region's nucleotide sequence