Strain Fitness in Rahnella sp. WP5 around EX31_RS00970

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00965 and EX31_RS00970 overlap by 10 nucleotidesEX31_RS00970 and EX31_RS00975 are separated by 3 nucleotides EX31_RS00965: EX31_RS00965 - type VI secretion system baseplate subunit TssF, at 208,432 to 210,234 _RS00965 EX31_RS00970: EX31_RS00970 - type VI secretion system baseplate subunit TssG, at 210,225 to 211,172 _RS00970 EX31_RS00975: EX31_RS00975 - type VI secretion system tip protein VgrG, at 211,176 to 213,089 _RS00975 Position (kb) 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 209.274 kb on - strand, within EX31_RS00965at 209.295 kb on - strand, within EX31_RS00965at 209.453 kb on + strand, within EX31_RS00965at 209.453 kb on + strand, within EX31_RS00965at 209.509 kb on + strand, within EX31_RS00965at 209.509 kb on + strand, within EX31_RS00965at 209.509 kb on + strand, within EX31_RS00965at 209.571 kb on + strand, within EX31_RS00965at 209.571 kb on + strand, within EX31_RS00965at 209.571 kb on + strand, within EX31_RS00965at 209.572 kb on - strand, within EX31_RS00965at 209.572 kb on - strand, within EX31_RS00965at 209.572 kb on - strand, within EX31_RS00965at 209.572 kb on - strand, within EX31_RS00965at 209.572 kb on - strand, within EX31_RS00965at 209.572 kb on - strand, within EX31_RS00965at 209.572 kb on - strand, within EX31_RS00965at 209.615 kb on + strand, within EX31_RS00965at 209.615 kb on + strand, within EX31_RS00965at 209.615 kb on + strand, within EX31_RS00965at 209.615 kb on + strand, within EX31_RS00965at 209.616 kb on - strand, within EX31_RS00965at 209.616 kb on - strand, within EX31_RS00965at 209.616 kb on - strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.868 kb on + strand, within EX31_RS00965at 209.869 kb on - strand, within EX31_RS00965at 209.869 kb on - strand, within EX31_RS00965at 209.869 kb on - strand, within EX31_RS00965at 209.869 kb on - strand, within EX31_RS00965at 209.869 kb on - strand, within EX31_RS00965at 210.054 kb on - strandat 210.089 kb on - strandat 210.130 kb on + strandat 210.130 kb on + strandat 210.130 kb on + strandat 210.130 kb on + strandat 210.130 kb on + strandat 210.131 kb on - strandat 210.159 kb on - strandat 210.232 kb on + strandat 210.233 kb on - strandat 210.233 kb on - strandat 210.233 kb on - strandat 210.233 kb on - strandat 210.284 kb on - strandat 210.319 kb on + strandat 210.319 kb on + strandat 210.319 kb on + strandat 210.319 kb on + strandat 210.319 kb on + strandat 210.319 kb on + strandat 210.319 kb on + strandat 210.319 kb on + strandat 210.319 kb on + strandat 210.320 kb on - strand, within EX31_RS00970at 210.320 kb on - strand, within EX31_RS00970at 210.386 kb on + strand, within EX31_RS00970at 210.475 kb on + strand, within EX31_RS00970at 210.477 kb on + strand, within EX31_RS00970at 210.477 kb on + strand, within EX31_RS00970at 210.478 kb on - strand, within EX31_RS00970at 210.478 kb on - strand, within EX31_RS00970at 210.478 kb on - strand, within EX31_RS00970at 210.501 kb on + strand, within EX31_RS00970at 210.501 kb on + strand, within EX31_RS00970at 210.559 kb on + strand, within EX31_RS00970at 210.559 kb on + strand, within EX31_RS00970at 210.559 kb on + strand, within EX31_RS00970at 210.560 kb on - strand, within EX31_RS00970at 210.560 kb on - strand, within EX31_RS00970at 210.560 kb on - strand, within EX31_RS00970at 210.563 kb on + strand, within EX31_RS00970at 210.563 kb on + strand, within EX31_RS00970at 210.591 kb on + strand, within EX31_RS00970at 210.592 kb on - strand, within EX31_RS00970at 210.592 kb on - strand, within EX31_RS00970at 210.600 kb on + strand, within EX31_RS00970at 210.854 kb on + strand, within EX31_RS00970at 210.854 kb on + strand, within EX31_RS00970at 210.854 kb on + strand, within EX31_RS00970at 210.854 kb on + strand, within EX31_RS00970at 210.854 kb on + strand, within EX31_RS00970at 210.854 kb on + strand, within EX31_RS00970at 210.855 kb on - strand, within EX31_RS00970at 210.855 kb on - strand, within EX31_RS00970at 210.855 kb on - strand, within EX31_RS00970at 210.855 kb on - strand, within EX31_RS00970at 211.005 kb on + strand, within EX31_RS00970at 211.005 kb on + strand, within EX31_RS00970at 211.005 kb on + strand, within EX31_RS00970at 211.005 kb on + strand, within EX31_RS00970at 211.005 kb on + strand, within EX31_RS00970at 211.006 kb on - strand, within EX31_RS00970at 211.006 kb on - strand, within EX31_RS00970at 211.006 kb on - strand, within EX31_RS00970at 211.006 kb on - strand, within EX31_RS00970at 211.100 kb on + strandat 211.136 kb on + strandat 211.187 kb on - strandat 211.251 kb on + strandat 211.251 kb on + strandat 211.251 kb on + strandat 211.251 kb on + strandat 211.252 kb on - strandat 211.252 kb on - strandat 211.252 kb on - strandat 211.252 kb on - strandat 211.290 kb on + strandat 211.291 kb on - strandat 211.315 kb on + strandat 211.315 kb on + strandat 211.318 kb on + strandat 211.318 kb on + strandat 211.318 kb on + strandat 211.318 kb on + strandat 211.319 kb on - strandat 211.427 kb on + strand, within EX31_RS00975at 211.427 kb on + strand, within EX31_RS00975at 211.427 kb on + strand, within EX31_RS00975at 211.496 kb on + strand, within EX31_RS00975at 211.496 kb on + strand, within EX31_RS00975at 211.496 kb on + strand, within EX31_RS00975at 211.496 kb on + strand, within EX31_RS00975at 211.497 kb on - strand, within EX31_RS00975at 211.520 kb on + strand, within EX31_RS00975at 211.521 kb on - strand, within EX31_RS00975at 211.534 kb on + strand, within EX31_RS00975at 211.562 kb on + strand, within EX31_RS00975at 211.597 kb on - strand, within EX31_RS00975at 211.611 kb on + strand, within EX31_RS00975at 211.611 kb on + strand, within EX31_RS00975at 211.677 kb on + strand, within EX31_RS00975at 211.677 kb on + strand, within EX31_RS00975at 211.677 kb on + strand, within EX31_RS00975at 211.677 kb on + strand, within EX31_RS00975at 211.678 kb on - strand, within EX31_RS00975at 211.680 kb on + strand, within EX31_RS00975at 211.680 kb on + strand, within EX31_RS00975at 211.681 kb on - strand, within EX31_RS00975at 211.681 kb on - strand, within EX31_RS00975at 211.773 kb on - strand, within EX31_RS00975at 211.865 kb on + strand, within EX31_RS00975at 211.866 kb on - strand, within EX31_RS00975at 211.920 kb on + strand, within EX31_RS00975at 211.941 kb on + strand, within EX31_RS00975at 211.941 kb on + strand, within EX31_RS00975at 212.035 kb on - strand, within EX31_RS00975at 212.133 kb on - strand, within EX31_RS00975at 212.133 kb on - strand, within EX31_RS00975

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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209,274 - EX31_RS00965 0.47 -0.6
209,295 - EX31_RS00965 0.48 +0.3
209,453 + EX31_RS00965 0.57 -2.2
209,453 + EX31_RS00965 0.57 +1.5
209,509 + EX31_RS00965 0.60 -2.2
209,509 + EX31_RS00965 0.60 -1.9
209,509 + EX31_RS00965 0.60 -0.3
209,571 + EX31_RS00965 0.63 -1.6
209,571 + EX31_RS00965 0.63 +0.8
209,571 + EX31_RS00965 0.63 -2.0
209,572 - EX31_RS00965 0.63 +0.3
209,572 - EX31_RS00965 0.63 -1.6
209,572 - EX31_RS00965 0.63 +1.0
209,572 - EX31_RS00965 0.63 +1.0
209,572 - EX31_RS00965 0.63 +1.7
209,572 - EX31_RS00965 0.63 -1.8
209,572 - EX31_RS00965 0.63 +0.0
209,615 + EX31_RS00965 0.66 +0.0
209,615 + EX31_RS00965 0.66 +3.3
209,615 + EX31_RS00965 0.66 +1.0
209,615 + EX31_RS00965 0.66 +0.8
209,616 - EX31_RS00965 0.66 +1.7
209,616 - EX31_RS00965 0.66 +1.0
209,616 - EX31_RS00965 0.66 -0.4
209,868 + EX31_RS00965 0.80 -0.6
209,868 + EX31_RS00965 0.80 +0.0
209,868 + EX31_RS00965 0.80 -0.4
209,868 + EX31_RS00965 0.80 -2.3
209,868 + EX31_RS00965 0.80 -1.8
209,868 + EX31_RS00965 0.80 +1.7
209,868 + EX31_RS00965 0.80 -1.0
209,868 + EX31_RS00965 0.80 +0.0
209,868 + EX31_RS00965 0.80 +1.0
209,868 + EX31_RS00965 0.80 -0.6
209,868 + EX31_RS00965 0.80 -0.6
209,869 - EX31_RS00965 0.80 +1.0
209,869 - EX31_RS00965 0.80 +1.1
209,869 - EX31_RS00965 0.80 -1.8
209,869 - EX31_RS00965 0.80 -2.0
209,869 - EX31_RS00965 0.80 +1.0
210,054 - +1.2
210,089 - +2.1
210,130 + +1.8
210,130 + -1.5
210,130 + -1.0
210,130 + +0.2
210,130 + +2.1
210,131 - -1.8
210,159 - +0.7
210,232 + -1.8
210,233 - +1.0
210,233 - -1.2
210,233 - +4.2
210,233 - -0.6
210,284 - -1.0
210,319 + +2.3
210,319 + -2.5
210,319 + +0.8
210,319 + +1.0
210,319 + +0.7
210,319 + -1.6
210,319 + +0.8
210,319 + +1.6
210,319 + +1.0
210,320 - EX31_RS00970 0.10 -0.9
210,320 - EX31_RS00970 0.10 -2.6
210,386 + EX31_RS00970 0.17 -1.3
210,475 + EX31_RS00970 0.26 +1.0
210,477 + EX31_RS00970 0.27 -3.1
210,477 + EX31_RS00970 0.27 -2.6
210,478 - EX31_RS00970 0.27 -1.6
210,478 - EX31_RS00970 0.27 +1.9
210,478 - EX31_RS00970 0.27 -1.3
210,501 + EX31_RS00970 0.29 -2.2
210,501 + EX31_RS00970 0.29 -1.6
210,559 + EX31_RS00970 0.35 -1.3
210,559 + EX31_RS00970 0.35 -1.8
210,559 + EX31_RS00970 0.35 +1.0
210,560 - EX31_RS00970 0.35 -1.8
210,560 - EX31_RS00970 0.35 -2.6
210,560 - EX31_RS00970 0.35 -2.0
210,563 + EX31_RS00970 0.36 -0.0
210,563 + EX31_RS00970 0.36 -1.3
210,591 + EX31_RS00970 0.39 -0.0
210,592 - EX31_RS00970 0.39 -1.8
210,592 - EX31_RS00970 0.39 +1.0
210,600 + EX31_RS00970 0.40 +0.6
210,854 + EX31_RS00970 0.66 +1.3
210,854 + EX31_RS00970 0.66 -1.6
210,854 + EX31_RS00970 0.66 -1.6
210,854 + EX31_RS00970 0.66 -2.6
210,854 + EX31_RS00970 0.66 -1.8
210,854 + EX31_RS00970 0.66 +1.0
210,855 - EX31_RS00970 0.66 -2.5
210,855 - EX31_RS00970 0.66 +3.6
210,855 - EX31_RS00970 0.66 +1.0
210,855 - EX31_RS00970 0.66 +2.6
211,005 + EX31_RS00970 0.82 -2.5
211,005 + EX31_RS00970 0.82 +0.8
211,005 + EX31_RS00970 0.82 -0.3
211,005 + EX31_RS00970 0.82 -2.0
211,005 + EX31_RS00970 0.82 -2.9
211,006 - EX31_RS00970 0.82 +1.0
211,006 - EX31_RS00970 0.82 -3.0
211,006 - EX31_RS00970 0.82 -0.0
211,006 - EX31_RS00970 0.82 +1.2
211,100 + +1.4
211,136 + +0.3
211,187 - +1.3
211,251 + -1.6
211,251 + -0.6
211,251 + -0.2
211,251 + -2.0
211,252 - +1.0
211,252 - -0.2
211,252 - -1.3
211,252 - +0.1
211,290 + -0.0
211,291 - -1.6
211,315 + -0.0
211,315 + -2.3
211,318 + +2.4
211,318 + +1.6
211,318 + -1.8
211,318 + +3.0
211,319 - -1.6
211,427 + EX31_RS00975 0.13 +1.0
211,427 + EX31_RS00975 0.13 -1.3
211,427 + EX31_RS00975 0.13 +1.1
211,496 + EX31_RS00975 0.17 +2.0
211,496 + EX31_RS00975 0.17 -1.6
211,496 + EX31_RS00975 0.17 -0.2
211,496 + EX31_RS00975 0.17 -1.6
211,497 - EX31_RS00975 0.17 -2.2
211,520 + EX31_RS00975 0.18 +0.3
211,521 - EX31_RS00975 0.18 +0.8
211,534 + EX31_RS00975 0.19 -0.0
211,562 + EX31_RS00975 0.20 -2.5
211,597 - EX31_RS00975 0.22 -1.0
211,611 + EX31_RS00975 0.23 -2.3
211,611 + EX31_RS00975 0.23 -0.0
211,677 + EX31_RS00975 0.26 +1.5
211,677 + EX31_RS00975 0.26 +1.2
211,677 + EX31_RS00975 0.26 -2.5
211,677 + EX31_RS00975 0.26 -1.8
211,678 - EX31_RS00975 0.26 -1.3
211,680 + EX31_RS00975 0.26 -1.0
211,680 + EX31_RS00975 0.26 +0.5
211,681 - EX31_RS00975 0.26 +0.5
211,681 - EX31_RS00975 0.26 -1.8
211,773 - EX31_RS00975 0.31 +0.6
211,865 + EX31_RS00975 0.36 -2.3
211,866 - EX31_RS00975 0.36 -2.2
211,920 + EX31_RS00975 0.39 +1.3
211,941 + EX31_RS00975 0.40 -0.5
211,941 + EX31_RS00975 0.40 -2.0
212,035 - EX31_RS00975 0.45 -2.6
212,133 - EX31_RS00975 0.50 +1.0
212,133 - EX31_RS00975 0.50 +2.2

Or see this region's nucleotide sequence