Strain Fitness in Rahnella sp. WP5 around EX31_RS00945

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00940 and EX31_RS25890 are separated by 47 nucleotidesEX31_RS25890 and EX31_RS00945 are separated by 614 nucleotidesEX31_RS00945 and EX31_RS00950 overlap by 4 nucleotides EX31_RS00940: EX31_RS00940 - manganese efflux pump MntP, at 204,172 to 204,747 _RS00940 EX31_RS25890: EX31_RS25890 - hypothetical protein, at 204,795 to 204,857 _RS25890 EX31_RS00945: EX31_RS00945 - type VI secretion system contractile sheath small subunit, at 205,472 to 205,951 _RS00945 EX31_RS00950: EX31_RS00950 - type VI secretion system contractile sheath large subunit, at 205,948 to 207,429 _RS00950 Position (kb) 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 204.472 kb on - strand, within EX31_RS00940at 204.472 kb on - strand, within EX31_RS00940at 204.555 kb on + strand, within EX31_RS00940at 204.556 kb on - strand, within EX31_RS00940at 204.556 kb on - strand, within EX31_RS00940at 204.601 kb on - strand, within EX31_RS00940at 204.614 kb on - strand, within EX31_RS00940at 204.712 kb on - strandat 204.712 kb on - strandat 204.736 kb on - strandat 204.921 kb on - strandat 204.961 kb on + strandat 204.962 kb on - strandat 204.962 kb on - strandat 205.007 kb on + strandat 205.009 kb on + strandat 205.009 kb on + strandat 205.009 kb on + strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.070 kb on - strandat 205.075 kb on + strandat 205.076 kb on - strandat 205.097 kb on - strandat 205.105 kb on - strandat 205.105 kb on - strandat 205.137 kb on - strandat 205.143 kb on + strandat 205.143 kb on + strandat 205.146 kb on + strandat 205.146 kb on + strandat 205.147 kb on - strandat 205.259 kb on + strandat 205.489 kb on + strandat 205.569 kb on + strand, within EX31_RS00945at 205.569 kb on + strand, within EX31_RS00945at 205.569 kb on + strand, within EX31_RS00945at 205.603 kb on + strand, within EX31_RS00945at 205.660 kb on + strand, within EX31_RS00945at 205.663 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.900 kb on - strand, within EX31_RS00945at 205.902 kb on + strand, within EX31_RS00945at 205.944 kb on + strandat 205.945 kb on - strandat 206.002 kb on + strandat 206.023 kb on - strandat 206.055 kb on + strandat 206.056 kb on - strandat 206.058 kb on + strandat 206.329 kb on - strand, within EX31_RS00950at 206.374 kb on + strand, within EX31_RS00950at 206.374 kb on + strand, within EX31_RS00950at 206.375 kb on - strand, within EX31_RS00950at 206.387 kb on - strand, within EX31_RS00950at 206.410 kb on + strand, within EX31_RS00950at 206.410 kb on + strand, within EX31_RS00950at 206.445 kb on + strand, within EX31_RS00950at 206.606 kb on - strand, within EX31_RS00950at 206.648 kb on - strand, within EX31_RS00950at 206.648 kb on - strand, within EX31_RS00950at 206.689 kb on + strand, within EX31_RS00950at 206.690 kb on - strand, within EX31_RS00950at 206.764 kb on + strand, within EX31_RS00950at 206.764 kb on + strand, within EX31_RS00950at 206.764 kb on + strand, within EX31_RS00950at 206.785 kb on + strand, within EX31_RS00950at 206.786 kb on - strand, within EX31_RS00950at 206.893 kb on + strand, within EX31_RS00950at 206.894 kb on - strand, within EX31_RS00950

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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204,472 - EX31_RS00940 0.52 -0.3
204,472 - EX31_RS00940 0.52 +2.9
204,555 + EX31_RS00940 0.66 +1.0
204,556 - EX31_RS00940 0.67 +0.0
204,556 - EX31_RS00940 0.67 -0.6
204,601 - EX31_RS00940 0.74 +0.5
204,614 - EX31_RS00940 0.77 +0.0
204,712 - -2.6
204,712 - +0.2
204,736 - +1.2
204,921 - -1.8
204,961 + -2.0
204,962 - +1.2
204,962 - +0.8
205,007 + +0.0
205,009 + +1.3
205,009 + +0.0
205,009 + -1.3
205,010 - -1.3
205,010 - -1.8
205,010 - +1.0
205,010 - +0.8
205,010 - -2.6
205,070 - +0.5
205,075 + +1.0
205,076 - +0.4
205,097 - +1.3
205,105 - -0.5
205,105 - +2.6
205,137 - +1.2
205,143 + +0.0
205,143 + -0.8
205,146 + +0.0
205,146 + -1.7
205,147 - -3.2
205,259 + -2.2
205,489 + +2.0
205,569 + EX31_RS00945 0.20 -0.2
205,569 + EX31_RS00945 0.20 +0.1
205,569 + EX31_RS00945 0.20 -3.6
205,603 + EX31_RS00945 0.27 -2.6
205,660 + EX31_RS00945 0.39 -0.4
205,663 + EX31_RS00945 0.40 +1.3
205,711 + EX31_RS00945 0.50 -2.6
205,711 + EX31_RS00945 0.50 -1.6
205,711 + EX31_RS00945 0.50 -1.4
205,711 + EX31_RS00945 0.50 -2.4
205,711 + EX31_RS00945 0.50 -2.3
205,900 - EX31_RS00945 0.89 +0.4
205,902 + EX31_RS00945 0.90 +3.7
205,944 + -2.6
205,945 - +0.5
206,002 + -3.2
206,023 - -3.2
206,055 + -1.8
206,056 - +0.0
206,058 + -2.4
206,329 - EX31_RS00950 0.26 -0.6
206,374 + EX31_RS00950 0.29 -1.0
206,374 + EX31_RS00950 0.29 +4.5
206,375 - EX31_RS00950 0.29 +0.0
206,387 - EX31_RS00950 0.30 -2.6
206,410 + EX31_RS00950 0.31 -0.2
206,410 + EX31_RS00950 0.31 -1.8
206,445 + EX31_RS00950 0.34 -0.6
206,606 - EX31_RS00950 0.44 +1.4
206,648 - EX31_RS00950 0.47 -1.6
206,648 - EX31_RS00950 0.47 -1.8
206,689 + EX31_RS00950 0.50 +0.0
206,690 - EX31_RS00950 0.50 +0.6
206,764 + EX31_RS00950 0.55 -1.0
206,764 + EX31_RS00950 0.55 +0.4
206,764 + EX31_RS00950 0.55 +0.0
206,785 + EX31_RS00950 0.56 +0.8
206,786 - EX31_RS00950 0.57 -3.4
206,893 + EX31_RS00950 0.64 -2.8
206,894 - EX31_RS00950 0.64 +1.0

Or see this region's nucleotide sequence