Strain Fitness in Rahnella sp. WP5 around EX31_RS00835

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00825 and EX31_RS00830 overlap by 4 nucleotidesEX31_RS00830 and EX31_RS00835 overlap by 4 nucleotidesEX31_RS00835 and EX31_RS00840 overlap by 8 nucleotidesEX31_RS00840 and EX31_RS00845 are separated by 48 nucleotides EX31_RS00825: EX31_RS00825 - ABC transporter ATP-binding protein, at 179,933 to 180,652 _RS00825 EX31_RS00830: EX31_RS00830 - ABC transporter ATP-binding protein, at 180,649 to 181,428 _RS00830 EX31_RS00835: EX31_RS00835 - branched-chain amino acid ABC transporter permease, at 181,425 to 182,312 _RS00835 EX31_RS00840: EX31_RS00840 - branched-chain amino acid ABC transporter permease, at 182,305 to 183,198 _RS00840 EX31_RS00845: EX31_RS00845 - ABC transporter substrate-binding protein, at 183,247 to 184,374 _RS00845 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 180.593 kb on - strandat 180.593 kb on - strandat 180.622 kb on - strandat 180.647 kb on - strandat 180.689 kb on + strandat 180.689 kb on + strandat 180.690 kb on - strandat 180.690 kb on - strandat 180.690 kb on - strandat 180.690 kb on - strandat 180.690 kb on - strandat 180.701 kb on - strandat 180.793 kb on - strand, within EX31_RS00830at 180.802 kb on - strand, within EX31_RS00830at 180.829 kb on - strand, within EX31_RS00830at 180.874 kb on + strand, within EX31_RS00830at 180.875 kb on - strand, within EX31_RS00830at 180.875 kb on - strand, within EX31_RS00830at 180.927 kb on + strand, within EX31_RS00830at 180.949 kb on - strand, within EX31_RS00830at 181.028 kb on - strand, within EX31_RS00830at 181.297 kb on - strand, within EX31_RS00830at 181.297 kb on - strand, within EX31_RS00830at 181.353 kb on + strandat 181.485 kb on + strandat 181.486 kb on - strandat 181.488 kb on + strandat 181.489 kb on - strandat 181.550 kb on - strand, within EX31_RS00835at 181.550 kb on - strand, within EX31_RS00835at 181.550 kb on - strand, within EX31_RS00835at 181.574 kb on + strand, within EX31_RS00835at 181.574 kb on + strand, within EX31_RS00835at 181.574 kb on + strand, within EX31_RS00835at 181.575 kb on - strand, within EX31_RS00835at 181.575 kb on - strand, within EX31_RS00835at 181.575 kb on - strand, within EX31_RS00835at 181.575 kb on - strand, within EX31_RS00835at 181.576 kb on + strand, within EX31_RS00835at 181.576 kb on + strand, within EX31_RS00835at 181.577 kb on - strand, within EX31_RS00835at 181.577 kb on - strand, within EX31_RS00835at 181.629 kb on - strand, within EX31_RS00835at 181.655 kb on + strand, within EX31_RS00835at 181.696 kb on + strand, within EX31_RS00835at 181.697 kb on - strand, within EX31_RS00835at 181.697 kb on - strand, within EX31_RS00835at 181.717 kb on - strand, within EX31_RS00835at 181.721 kb on + strand, within EX31_RS00835at 181.787 kb on - strand, within EX31_RS00835at 181.901 kb on + strand, within EX31_RS00835at 182.057 kb on - strand, within EX31_RS00835at 182.179 kb on + strand, within EX31_RS00835at 182.180 kb on - strand, within EX31_RS00835at 182.180 kb on - strand, within EX31_RS00835at 182.230 kb on + strandat 182.269 kb on + strandat 182.269 kb on + strandat 182.270 kb on - strandat 182.291 kb on + strandat 182.291 kb on + strandat 182.350 kb on + strandat 182.351 kb on - strandat 182.351 kb on - strandat 182.351 kb on - strandat 182.413 kb on + strand, within EX31_RS00840at 182.414 kb on - strand, within EX31_RS00840at 182.598 kb on + strand, within EX31_RS00840at 182.598 kb on + strand, within EX31_RS00840at 182.598 kb on + strand, within EX31_RS00840at 182.649 kb on + strand, within EX31_RS00840at 182.650 kb on - strand, within EX31_RS00840at 182.849 kb on + strand, within EX31_RS00840at 182.850 kb on - strand, within EX31_RS00840at 182.906 kb on - strand, within EX31_RS00840at 183.064 kb on - strand, within EX31_RS00840at 183.083 kb on + strand, within EX31_RS00840at 183.084 kb on - strand, within EX31_RS00840at 183.091 kb on - strand, within EX31_RS00840at 183.091 kb on - strand, within EX31_RS00840at 183.134 kb on - strandat 183.177 kb on + strandat 183.177 kb on + strandat 183.177 kb on + strandat 183.177 kb on + strandat 183.178 kb on - strandat 183.178 kb on - strandat 183.178 kb on - strandat 183.178 kb on - strandat 183.236 kb on - strandat 183.290 kb on + strandat 183.303 kb on + strandat 183.303 kb on + strandat 183.303 kb on + strandat 183.304 kb on - strandat 183.304 kb on - strandat 183.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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180,593 - +1.8
180,593 - -1.6
180,622 - -1.3
180,647 - +2.3
180,689 + +0.8
180,689 + +2.4
180,690 - -1.6
180,690 - -1.0
180,690 - -1.0
180,690 - -1.3
180,690 - -2.0
180,701 - -1.6
180,793 - EX31_RS00830 0.18 -1.1
180,802 - EX31_RS00830 0.20 -2.1
180,829 - EX31_RS00830 0.23 -0.4
180,874 + EX31_RS00830 0.29 -1.6
180,875 - EX31_RS00830 0.29 +1.5
180,875 - EX31_RS00830 0.29 -3.2
180,927 + EX31_RS00830 0.36 -2.9
180,949 - EX31_RS00830 0.38 -0.8
181,028 - EX31_RS00830 0.49 +2.6
181,297 - EX31_RS00830 0.83 -1.3
181,297 - EX31_RS00830 0.83 +1.0
181,353 + -1.8
181,485 + -0.6
181,486 - -1.0
181,488 + +2.4
181,489 - +2.8
181,550 - EX31_RS00835 0.14 -2.9
181,550 - EX31_RS00835 0.14 -1.3
181,550 - EX31_RS00835 0.14 +0.7
181,574 + EX31_RS00835 0.17 -3.1
181,574 + EX31_RS00835 0.17 -2.1
181,574 + EX31_RS00835 0.17 -1.8
181,575 - EX31_RS00835 0.17 -2.6
181,575 - EX31_RS00835 0.17 -2.6
181,575 - EX31_RS00835 0.17 -2.1
181,575 - EX31_RS00835 0.17 -1.6
181,576 + EX31_RS00835 0.17 +0.0
181,576 + EX31_RS00835 0.17 -1.8
181,577 - EX31_RS00835 0.17 -1.8
181,577 - EX31_RS00835 0.17 +1.2
181,629 - EX31_RS00835 0.23 -2.6
181,655 + EX31_RS00835 0.26 -1.0
181,696 + EX31_RS00835 0.31 +3.6
181,697 - EX31_RS00835 0.31 -0.1
181,697 - EX31_RS00835 0.31 -2.9
181,717 - EX31_RS00835 0.33 +2.4
181,721 + EX31_RS00835 0.33 -2.3
181,787 - EX31_RS00835 0.41 +2.4
181,901 + EX31_RS00835 0.54 -0.6
182,057 - EX31_RS00835 0.71 -1.0
182,179 + EX31_RS00835 0.85 +0.5
182,180 - EX31_RS00835 0.85 +0.0
182,180 - EX31_RS00835 0.85 -2.9
182,230 + +2.3
182,269 + +1.4
182,269 + -2.3
182,270 - +0.9
182,291 + +0.2
182,291 + -1.3
182,350 + -2.1
182,351 - +0.0
182,351 - +0.0
182,351 - -1.6
182,413 + EX31_RS00840 0.12 -2.7
182,414 - EX31_RS00840 0.12 +1.8
182,598 + EX31_RS00840 0.33 -2.7
182,598 + EX31_RS00840 0.33 +1.0
182,598 + EX31_RS00840 0.33 -1.0
182,649 + EX31_RS00840 0.38 +0.5
182,650 - EX31_RS00840 0.39 +1.5
182,849 + EX31_RS00840 0.61 -0.3
182,850 - EX31_RS00840 0.61 -1.6
182,906 - EX31_RS00840 0.67 -0.6
183,064 - EX31_RS00840 0.85 +0.8
183,083 + EX31_RS00840 0.87 -2.8
183,084 - EX31_RS00840 0.87 -0.6
183,091 - EX31_RS00840 0.88 +0.0
183,091 - EX31_RS00840 0.88 +3.6
183,134 - +0.5
183,177 + -1.7
183,177 + +0.0
183,177 + +0.3
183,177 + -1.3
183,178 - -0.6
183,178 - -0.4
183,178 - -1.8
183,178 - -2.1
183,236 - -1.3
183,290 + -2.9
183,303 + +1.6
183,303 + -2.7
183,303 + +1.0
183,304 - +0.9
183,304 - +2.2
183,304 - +1.0

Or see this region's nucleotide sequence