Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00820 and EX31_RS00825 are separated by 33 nucleotides EX31_RS00825 and EX31_RS00830 overlap by 4 nucleotides EX31_RS00830 and EX31_RS00835 overlap by 4 nucleotides EX31_RS00835 and EX31_RS00840 overlap by 8 nucleotides
EX31_RS00820: EX31_RS00820 - VOC family protein, at 179,060 to 179,899
_RS00820
EX31_RS00825: EX31_RS00825 - ABC transporter ATP-binding protein, at 179,933 to 180,652
_RS00825
EX31_RS00830: EX31_RS00830 - ABC transporter ATP-binding protein, at 180,649 to 181,428
_RS00830
EX31_RS00835: EX31_RS00835 - branched-chain amino acid ABC transporter permease, at 181,425 to 182,312
_RS00835
EX31_RS00840: EX31_RS00840 - branched-chain amino acid ABC transporter permease, at 182,305 to 183,198
_RS00840
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 179.742 kb on + strand, within EX31_RS00820 at 179.743 kb on - strand, within EX31_RS00820 at 179.743 kb on - strand, within EX31_RS00820 at 179.743 kb on - strand, within EX31_RS00820 at 179.747 kb on - strand, within EX31_RS00820 at 179.864 kb on - strand at 179.899 kb on + strand at 179.900 kb on - strand at 179.900 kb on - strand at 179.900 kb on - strand at 179.955 kb on + strand at 179.956 kb on - strand at 179.982 kb on - strand at 180.033 kb on + strand, within EX31_RS00825 at 180.033 kb on + strand, within EX31_RS00825 at 180.033 kb on + strand, within EX31_RS00825 at 180.034 kb on - strand, within EX31_RS00825 at 180.034 kb on - strand, within EX31_RS00825 at 180.064 kb on + strand, within EX31_RS00825 at 180.064 kb on + strand, within EX31_RS00825 at 180.120 kb on - strand, within EX31_RS00825 at 180.185 kb on + strand, within EX31_RS00825 at 180.186 kb on - strand, within EX31_RS00825 at 180.186 kb on - strand, within EX31_RS00825 at 180.275 kb on - strand, within EX31_RS00825 at 180.319 kb on + strand, within EX31_RS00825 at 180.319 kb on + strand, within EX31_RS00825 at 180.319 kb on + strand, within EX31_RS00825 at 180.319 kb on + strand, within EX31_RS00825 at 180.319 kb on + strand, within EX31_RS00825 at 180.320 kb on - strand, within EX31_RS00825 at 180.320 kb on - strand, within EX31_RS00825 at 180.320 kb on - strand, within EX31_RS00825 at 180.320 kb on - strand, within EX31_RS00825 at 180.320 kb on - strand, within EX31_RS00825 at 180.593 kb on - strand at 180.593 kb on - strand at 180.622 kb on - strand at 180.647 kb on - strand at 180.689 kb on + strand at 180.689 kb on + strand at 180.690 kb on - strand at 180.690 kb on - strand at 180.690 kb on - strand at 180.690 kb on - strand at 180.690 kb on - strand at 180.701 kb on - strand at 180.793 kb on - strand, within EX31_RS00830 at 180.802 kb on - strand, within EX31_RS00830 at 180.829 kb on - strand, within EX31_RS00830 at 180.874 kb on + strand, within EX31_RS00830 at 180.875 kb on - strand, within EX31_RS00830 at 180.875 kb on - strand, within EX31_RS00830 at 180.927 kb on + strand, within EX31_RS00830 at 180.949 kb on - strand, within EX31_RS00830 at 181.028 kb on - strand, within EX31_RS00830 at 181.297 kb on - strand, within EX31_RS00830 at 181.297 kb on - strand, within EX31_RS00830 at 181.353 kb on + strand at 181.485 kb on + strand at 181.486 kb on - strand at 181.488 kb on + strand at 181.489 kb on - strand at 181.550 kb on - strand, within EX31_RS00835 at 181.550 kb on - strand, within EX31_RS00835 at 181.550 kb on - strand, within EX31_RS00835 at 181.574 kb on + strand, within EX31_RS00835 at 181.574 kb on + strand, within EX31_RS00835 at 181.574 kb on + strand, within EX31_RS00835 at 181.575 kb on - strand, within EX31_RS00835 at 181.575 kb on - strand, within EX31_RS00835 at 181.575 kb on - strand, within EX31_RS00835 at 181.575 kb on - strand, within EX31_RS00835 at 181.576 kb on + strand, within EX31_RS00835 at 181.576 kb on + strand, within EX31_RS00835 at 181.577 kb on - strand, within EX31_RS00835 at 181.577 kb on - strand, within EX31_RS00835 at 181.629 kb on - strand, within EX31_RS00835 at 181.655 kb on + strand, within EX31_RS00835 at 181.696 kb on + strand, within EX31_RS00835 at 181.697 kb on - strand, within EX31_RS00835 at 181.697 kb on - strand, within EX31_RS00835 at 181.717 kb on - strand, within EX31_RS00835 at 181.721 kb on + strand, within EX31_RS00835 at 181.787 kb on - strand, within EX31_RS00835 at 181.901 kb on + strand, within EX31_RS00835 at 182.057 kb on - strand, within EX31_RS00835 at 182.179 kb on + strand, within EX31_RS00835 at 182.180 kb on - strand, within EX31_RS00835 at 182.180 kb on - strand, within EX31_RS00835 at 182.230 kb on + strand at 182.269 kb on + strand at 182.269 kb on + strand at 182.270 kb on - strand at 182.291 kb on + strand at 182.291 kb on + strand at 182.350 kb on + strand at 182.351 kb on - strand at 182.351 kb on - strand at 182.351 kb on - strand at 182.413 kb on + strand, within EX31_RS00840 at 182.414 kb on - strand, within EX31_RS00840
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 179,742 + EX31_RS00820 0.81 +2.4 179,743 - EX31_RS00820 0.81 -0.3 179,743 - EX31_RS00820 0.81 +0.0 179,743 - EX31_RS00820 0.81 -1.7 179,747 - EX31_RS00820 0.82 +1.7 179,864 - -1.6 179,899 + -0.6 179,900 - +2.8 179,900 - +3.0 179,900 - -2.0 179,955 + -2.7 179,956 - -1.0 179,982 - -1.6 180,033 + EX31_RS00825 0.14 -1.6 180,033 + EX31_RS00825 0.14 +1.0 180,033 + EX31_RS00825 0.14 -2.6 180,034 - EX31_RS00825 0.14 +1.0 180,034 - EX31_RS00825 0.14 +1.5 180,064 + EX31_RS00825 0.18 -2.8 180,064 + EX31_RS00825 0.18 +1.0 180,120 - EX31_RS00825 0.26 -0.6 180,185 + EX31_RS00825 0.35 +2.3 180,186 - EX31_RS00825 0.35 -2.4 180,186 - EX31_RS00825 0.35 +1.0 180,275 - EX31_RS00825 0.47 -1.6 180,319 + EX31_RS00825 0.54 +0.4 180,319 + EX31_RS00825 0.54 -1.6 180,319 + EX31_RS00825 0.54 -1.8 180,319 + EX31_RS00825 0.54 +0.5 180,319 + EX31_RS00825 0.54 +0.0 180,320 - EX31_RS00825 0.54 +0.4 180,320 - EX31_RS00825 0.54 +2.4 180,320 - EX31_RS00825 0.54 +0.0 180,320 - EX31_RS00825 0.54 -1.0 180,320 - EX31_RS00825 0.54 +3.9 180,593 - +1.8 180,593 - -1.6 180,622 - -1.3 180,647 - +2.3 180,689 + +0.8 180,689 + +2.4 180,690 - -1.6 180,690 - -1.0 180,690 - -1.0 180,690 - -1.3 180,690 - -2.0 180,701 - -1.6 180,793 - EX31_RS00830 0.18 -1.1 180,802 - EX31_RS00830 0.20 -2.1 180,829 - EX31_RS00830 0.23 -0.4 180,874 + EX31_RS00830 0.29 -1.6 180,875 - EX31_RS00830 0.29 +1.5 180,875 - EX31_RS00830 0.29 -3.2 180,927 + EX31_RS00830 0.36 -2.9 180,949 - EX31_RS00830 0.38 -0.8 181,028 - EX31_RS00830 0.49 +2.6 181,297 - EX31_RS00830 0.83 -1.3 181,297 - EX31_RS00830 0.83 +1.0 181,353 + -1.8 181,485 + -0.6 181,486 - -1.0 181,488 + +2.4 181,489 - +2.8 181,550 - EX31_RS00835 0.14 -2.9 181,550 - EX31_RS00835 0.14 -1.3 181,550 - EX31_RS00835 0.14 +0.7 181,574 + EX31_RS00835 0.17 -3.1 181,574 + EX31_RS00835 0.17 -2.1 181,574 + EX31_RS00835 0.17 -1.8 181,575 - EX31_RS00835 0.17 -2.6 181,575 - EX31_RS00835 0.17 -2.6 181,575 - EX31_RS00835 0.17 -2.1 181,575 - EX31_RS00835 0.17 -1.6 181,576 + EX31_RS00835 0.17 +0.0 181,576 + EX31_RS00835 0.17 -1.8 181,577 - EX31_RS00835 0.17 -1.8 181,577 - EX31_RS00835 0.17 +1.2 181,629 - EX31_RS00835 0.23 -2.6 181,655 + EX31_RS00835 0.26 -1.0 181,696 + EX31_RS00835 0.31 +3.6 181,697 - EX31_RS00835 0.31 -0.1 181,697 - EX31_RS00835 0.31 -2.9 181,717 - EX31_RS00835 0.33 +2.4 181,721 + EX31_RS00835 0.33 -2.3 181,787 - EX31_RS00835 0.41 +2.4 181,901 + EX31_RS00835 0.54 -0.6 182,057 - EX31_RS00835 0.71 -1.0 182,179 + EX31_RS00835 0.85 +0.5 182,180 - EX31_RS00835 0.85 +0.0 182,180 - EX31_RS00835 0.85 -2.9 182,230 + +2.3 182,269 + +1.4 182,269 + -2.3 182,270 - +0.9 182,291 + +0.2 182,291 + -1.3 182,350 + -2.1 182,351 - +0.0 182,351 - +0.0 182,351 - -1.6 182,413 + EX31_RS00840 0.12 -2.7 182,414 - EX31_RS00840 0.12 +1.8
Or see this region's nucleotide sequence