Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00785 and EX31_RS00790 are separated by 13 nucleotides EX31_RS00790 and EX31_RS00795 are separated by 60 nucleotides
EX31_RS00785: EX31_RS00785 - GTPase, at 170,541 to 171,512
_RS00785
EX31_RS00790: EX31_RS00790 - YbdD/YjiX family protein, at 171,526 to 171,729
_RS00790
EX31_RS00795: EX31_RS00795 - carbon starvation protein A, at 171,790 to 173,943
_RS00795
Position (kb) 171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 170.675 kb on - strand, within EX31_RS00785 at 170.728 kb on - strand, within EX31_RS00785 at 170.738 kb on + strand, within EX31_RS00785 at 170.739 kb on - strand, within EX31_RS00785 at 170.921 kb on + strand, within EX31_RS00785 at 170.946 kb on - strand, within EX31_RS00785 at 170.964 kb on - strand, within EX31_RS00785 at 171.144 kb on + strand, within EX31_RS00785 at 171.144 kb on + strand, within EX31_RS00785 at 171.145 kb on - strand, within EX31_RS00785 at 171.145 kb on - strand, within EX31_RS00785 at 171.145 kb on - strand, within EX31_RS00785 at 171.145 kb on - strand, within EX31_RS00785 at 171.151 kb on + strand, within EX31_RS00785 at 171.152 kb on - strand, within EX31_RS00785 at 171.152 kb on - strand, within EX31_RS00785 at 171.152 kb on - strand, within EX31_RS00785 at 171.262 kb on - strand, within EX31_RS00785 at 171.262 kb on - strand, within EX31_RS00785 at 171.262 kb on - strand, within EX31_RS00785 at 171.333 kb on + strand, within EX31_RS00785 at 171.334 kb on - strand, within EX31_RS00785 at 171.344 kb on + strand, within EX31_RS00785 at 171.345 kb on - strand, within EX31_RS00785 at 171.345 kb on - strand, within EX31_RS00785 at 171.345 kb on - strand, within EX31_RS00785 at 171.345 kb on - strand, within EX31_RS00785 at 171.549 kb on + strand, within EX31_RS00790 at 171.636 kb on + strand, within EX31_RS00790 at 171.637 kb on - strand, within EX31_RS00790 at 171.647 kb on + strand, within EX31_RS00790 at 171.647 kb on + strand, within EX31_RS00790 at 171.647 kb on + strand, within EX31_RS00790 at 171.647 kb on + strand, within EX31_RS00790 at 171.647 kb on + strand, within EX31_RS00790 at 171.648 kb on - strand, within EX31_RS00790 at 171.648 kb on - strand, within EX31_RS00790 at 171.678 kb on + strand, within EX31_RS00790 at 171.678 kb on + strand, within EX31_RS00790 at 171.678 kb on + strand, within EX31_RS00790 at 171.679 kb on - strand, within EX31_RS00790 at 171.679 kb on - strand, within EX31_RS00790 at 171.679 kb on - strand, within EX31_RS00790 at 171.679 kb on - strand, within EX31_RS00790 at 171.679 kb on - strand, within EX31_RS00790 at 171.679 kb on - strand, within EX31_RS00790 at 171.679 kb on - strand, within EX31_RS00790 at 171.679 kb on - strand, within EX31_RS00790 at 171.679 kb on - strand, within EX31_RS00790 at 171.716 kb on - strand at 171.716 kb on - strand at 171.716 kb on - strand at 171.729 kb on + strand at 171.730 kb on - strand at 171.730 kb on - strand at 171.733 kb on + strand at 171.733 kb on + strand at 171.733 kb on + strand at 171.734 kb on - strand at 171.734 kb on - strand at 171.734 kb on - strand at 171.734 kb on - strand at 171.734 kb on - strand at 171.734 kb on - strand at 171.743 kb on + strand at 171.744 kb on - strand at 171.744 kb on - strand at 171.744 kb on - strand at 171.747 kb on + strand at 171.784 kb on - strand at 171.812 kb on - strand at 171.836 kb on + strand at 171.836 kb on + strand at 171.837 kb on - strand at 171.856 kb on - strand at 171.856 kb on - strand at 171.870 kb on + strand at 171.914 kb on + strand at 171.915 kb on - strand at 171.915 kb on - strand at 171.956 kb on + strand at 171.956 kb on + strand at 171.957 kb on - strand at 171.972 kb on + strand at 171.973 kb on - strand at 171.973 kb on - strand at 171.973 kb on - strand at 171.973 kb on - strand at 171.973 kb on - strand at 171.981 kb on + strand at 172.052 kb on + strand, within EX31_RS00795 at 172.053 kb on - strand, within EX31_RS00795 at 172.053 kb on - strand, within EX31_RS00795 at 172.053 kb on - strand, within EX31_RS00795 at 172.053 kb on - strand, within EX31_RS00795 at 172.119 kb on + strand, within EX31_RS00795 at 172.119 kb on + strand, within EX31_RS00795 at 172.120 kb on - strand, within EX31_RS00795 at 172.120 kb on - strand, within EX31_RS00795 at 172.158 kb on - strand, within EX31_RS00795 at 172.158 kb on - strand, within EX31_RS00795 at 172.289 kb on + strand, within EX31_RS00795 at 172.289 kb on + strand, within EX31_RS00795 at 172.401 kb on + strand, within EX31_RS00795 at 172.402 kb on - strand, within EX31_RS00795 at 172.503 kb on + strand, within EX31_RS00795
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 170,675 - EX31_RS00785 0.14 +1.8 170,728 - EX31_RS00785 0.19 -1.0 170,738 + EX31_RS00785 0.20 +0.2 170,739 - EX31_RS00785 0.20 -1.0 170,921 + EX31_RS00785 0.39 +0.6 170,946 - EX31_RS00785 0.42 +0.6 170,964 - EX31_RS00785 0.44 +0.0 171,144 + EX31_RS00785 0.62 +0.3 171,144 + EX31_RS00785 0.62 -3.0 171,145 - EX31_RS00785 0.62 -3.1 171,145 - EX31_RS00785 0.62 -2.3 171,145 - EX31_RS00785 0.62 -2.3 171,145 - EX31_RS00785 0.62 +2.0 171,151 + EX31_RS00785 0.63 -0.1 171,152 - EX31_RS00785 0.63 -1.0 171,152 - EX31_RS00785 0.63 -0.5 171,152 - EX31_RS00785 0.63 -0.1 171,262 - EX31_RS00785 0.74 -1.5 171,262 - EX31_RS00785 0.74 +0.0 171,262 - EX31_RS00785 0.74 +0.9 171,333 + EX31_RS00785 0.81 -2.3 171,334 - EX31_RS00785 0.82 -2.7 171,344 + EX31_RS00785 0.83 +1.5 171,345 - EX31_RS00785 0.83 +0.0 171,345 - EX31_RS00785 0.83 +1.0 171,345 - EX31_RS00785 0.83 -1.3 171,345 - EX31_RS00785 0.83 +1.0 171,549 + EX31_RS00790 0.11 -0.5 171,636 + EX31_RS00790 0.54 -1.8 171,637 - EX31_RS00790 0.54 -2.4 171,647 + EX31_RS00790 0.59 -1.8 171,647 + EX31_RS00790 0.59 -1.5 171,647 + EX31_RS00790 0.59 -1.5 171,647 + EX31_RS00790 0.59 -3.1 171,647 + EX31_RS00790 0.59 -1.8 171,648 - EX31_RS00790 0.60 -2.0 171,648 - EX31_RS00790 0.60 +1.5 171,678 + EX31_RS00790 0.75 +0.3 171,678 + EX31_RS00790 0.75 -0.4 171,678 + EX31_RS00790 0.75 -3.1 171,679 - EX31_RS00790 0.75 -1.5 171,679 - EX31_RS00790 0.75 +3.4 171,679 - EX31_RS00790 0.75 +1.0 171,679 - EX31_RS00790 0.75 -1.5 171,679 - EX31_RS00790 0.75 -1.8 171,679 - EX31_RS00790 0.75 +1.2 171,679 - EX31_RS00790 0.75 -1.0 171,679 - EX31_RS00790 0.75 -0.3 171,679 - EX31_RS00790 0.75 +2.3 171,716 - -0.2 171,716 - -1.5 171,716 - -1.3 171,729 + +0.0 171,730 - -0.5 171,730 - +0.0 171,733 + -2.0 171,733 + -0.5 171,733 + +1.1 171,734 - +1.6 171,734 - -0.5 171,734 - -1.8 171,734 - +0.2 171,734 - +0.6 171,734 - +1.0 171,743 + +0.6 171,744 - +0.0 171,744 - -2.8 171,744 - +0.4 171,747 + +2.5 171,784 - -0.5 171,812 - -2.1 171,836 + -2.4 171,836 + -1.0 171,837 - -3.0 171,856 - -2.3 171,856 - +0.0 171,870 + -1.0 171,914 + +2.1 171,915 - -2.0 171,915 - -2.0 171,956 + +0.0 171,956 + +0.0 171,957 - -2.0 171,972 + +2.9 171,973 - +0.0 171,973 - -1.3 171,973 - -3.4 171,973 - -0.3 171,973 - -1.8 171,981 + -0.5 172,052 + EX31_RS00795 0.12 +0.8 172,053 - EX31_RS00795 0.12 -3.1 172,053 - EX31_RS00795 0.12 -0.5 172,053 - EX31_RS00795 0.12 +0.5 172,053 - EX31_RS00795 0.12 -1.0 172,119 + EX31_RS00795 0.15 -1.8 172,119 + EX31_RS00795 0.15 -0.5 172,120 - EX31_RS00795 0.15 -1.0 172,120 - EX31_RS00795 0.15 -3.4 172,158 - EX31_RS00795 0.17 -2.1 172,158 - EX31_RS00795 0.17 -1.3 172,289 + EX31_RS00795 0.23 -1.3 172,289 + EX31_RS00795 0.23 -2.3 172,401 + EX31_RS00795 0.28 +1.0 172,402 - EX31_RS00795 0.28 -2.0 172,503 + EX31_RS00795 0.33 -1.0
Or see this region's nucleotide sequence