Strain Fitness in Rahnella sp. WP5 around EX31_RS00780

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00775 and EX31_RS00780 overlap by 7 nucleotidesEX31_RS00780 and EX31_RS00785 are separated by 30 nucleotides EX31_RS00775: EX31_RS00775 - sensor histidine kinase, at 168,109 to 169,797 _RS00775 EX31_RS00780: EX31_RS00780 - two-component system response regulator BtsR, at 169,791 to 170,510 _RS00780 EX31_RS00785: EX31_RS00785 - GTPase, at 170,541 to 171,512 _RS00785 Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.937 kb on + strand, within EX31_RS00775at 168.938 kb on - strand, within EX31_RS00775at 168.939 kb on + strand, within EX31_RS00775at 168.939 kb on + strand, within EX31_RS00775at 168.939 kb on + strand, within EX31_RS00775at 168.940 kb on - strand, within EX31_RS00775at 168.940 kb on - strand, within EX31_RS00775at 168.973 kb on + strand, within EX31_RS00775at 169.094 kb on - strand, within EX31_RS00775at 169.245 kb on + strand, within EX31_RS00775at 169.275 kb on + strand, within EX31_RS00775at 169.331 kb on - strand, within EX31_RS00775at 169.414 kb on + strand, within EX31_RS00775at 169.463 kb on + strand, within EX31_RS00775at 169.637 kb on + strandat 169.637 kb on + strandat 169.638 kb on - strandat 169.639 kb on + strandat 169.639 kb on + strandat 169.639 kb on + strandat 169.639 kb on + strandat 169.640 kb on - strandat 169.640 kb on - strandat 169.668 kb on - strandat 169.672 kb on - strandat 169.725 kb on + strandat 169.795 kb on + strandat 169.846 kb on + strandat 169.890 kb on - strand, within EX31_RS00780at 169.890 kb on - strand, within EX31_RS00780at 169.991 kb on + strand, within EX31_RS00780at 170.083 kb on - strand, within EX31_RS00780at 170.083 kb on - strand, within EX31_RS00780at 170.086 kb on + strand, within EX31_RS00780at 170.222 kb on + strand, within EX31_RS00780at 170.223 kb on - strand, within EX31_RS00780at 170.280 kb on + strand, within EX31_RS00780at 170.280 kb on + strand, within EX31_RS00780at 170.280 kb on + strand, within EX31_RS00780at 170.280 kb on + strand, within EX31_RS00780at 170.281 kb on - strand, within EX31_RS00780at 170.281 kb on - strand, within EX31_RS00780at 170.281 kb on - strand, within EX31_RS00780at 170.373 kb on + strand, within EX31_RS00780at 170.392 kb on - strand, within EX31_RS00780at 170.675 kb on - strand, within EX31_RS00785at 170.728 kb on - strand, within EX31_RS00785at 170.738 kb on + strand, within EX31_RS00785at 170.739 kb on - strand, within EX31_RS00785at 170.921 kb on + strand, within EX31_RS00785at 170.946 kb on - strand, within EX31_RS00785at 170.964 kb on - strand, within EX31_RS00785at 171.144 kb on + strand, within EX31_RS00785at 171.144 kb on + strand, within EX31_RS00785at 171.145 kb on - strand, within EX31_RS00785at 171.145 kb on - strand, within EX31_RS00785at 171.145 kb on - strand, within EX31_RS00785at 171.145 kb on - strand, within EX31_RS00785at 171.151 kb on + strand, within EX31_RS00785at 171.152 kb on - strand, within EX31_RS00785at 171.152 kb on - strand, within EX31_RS00785at 171.152 kb on - strand, within EX31_RS00785at 171.262 kb on - strand, within EX31_RS00785at 171.262 kb on - strand, within EX31_RS00785at 171.262 kb on - strand, within EX31_RS00785at 171.333 kb on + strand, within EX31_RS00785at 171.334 kb on - strand, within EX31_RS00785at 171.344 kb on + strand, within EX31_RS00785at 171.345 kb on - strand, within EX31_RS00785at 171.345 kb on - strand, within EX31_RS00785at 171.345 kb on - strand, within EX31_RS00785at 171.345 kb on - strand, within EX31_RS00785

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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168,937 + EX31_RS00775 0.49 +1.6
168,938 - EX31_RS00775 0.49 -1.0
168,939 + EX31_RS00775 0.49 -2.1
168,939 + EX31_RS00775 0.49 -2.5
168,939 + EX31_RS00775 0.49 +1.4
168,940 - EX31_RS00775 0.49 -2.4
168,940 - EX31_RS00775 0.49 +0.5
168,973 + EX31_RS00775 0.51 +2.0
169,094 - EX31_RS00775 0.58 -2.4
169,245 + EX31_RS00775 0.67 +0.6
169,275 + EX31_RS00775 0.69 +1.2
169,331 - EX31_RS00775 0.72 +1.9
169,414 + EX31_RS00775 0.77 +1.6
169,463 + EX31_RS00775 0.80 -0.3
169,637 + +0.6
169,637 + -2.4
169,638 - -1.3
169,639 + -2.9
169,639 + -1.3
169,639 + -3.2
169,639 + +2.4
169,640 - +0.5
169,640 - +1.6
169,668 - +2.2
169,672 - +0.0
169,725 + +2.4
169,795 + -1.8
169,846 + -2.0
169,890 - EX31_RS00780 0.14 -2.0
169,890 - EX31_RS00780 0.14 +1.6
169,991 + EX31_RS00780 0.28 +0.8
170,083 - EX31_RS00780 0.41 -1.3
170,083 - EX31_RS00780 0.41 +0.2
170,086 + EX31_RS00780 0.41 +1.0
170,222 + EX31_RS00780 0.60 -2.0
170,223 - EX31_RS00780 0.60 -1.3
170,280 + EX31_RS00780 0.68 -0.5
170,280 + EX31_RS00780 0.68 +1.0
170,280 + EX31_RS00780 0.68 -2.7
170,280 + EX31_RS00780 0.68 -3.3
170,281 - EX31_RS00780 0.68 -2.5
170,281 - EX31_RS00780 0.68 -0.5
170,281 - EX31_RS00780 0.68 +0.0
170,373 + EX31_RS00780 0.81 -1.3
170,392 - EX31_RS00780 0.83 -1.0
170,675 - EX31_RS00785 0.14 +1.8
170,728 - EX31_RS00785 0.19 -1.0
170,738 + EX31_RS00785 0.20 +0.2
170,739 - EX31_RS00785 0.20 -1.0
170,921 + EX31_RS00785 0.39 +0.6
170,946 - EX31_RS00785 0.42 +0.6
170,964 - EX31_RS00785 0.44 +0.0
171,144 + EX31_RS00785 0.62 +0.3
171,144 + EX31_RS00785 0.62 -3.0
171,145 - EX31_RS00785 0.62 -3.1
171,145 - EX31_RS00785 0.62 -2.3
171,145 - EX31_RS00785 0.62 -2.3
171,145 - EX31_RS00785 0.62 +2.0
171,151 + EX31_RS00785 0.63 -0.1
171,152 - EX31_RS00785 0.63 -1.0
171,152 - EX31_RS00785 0.63 -0.5
171,152 - EX31_RS00785 0.63 -0.1
171,262 - EX31_RS00785 0.74 -1.5
171,262 - EX31_RS00785 0.74 +0.0
171,262 - EX31_RS00785 0.74 +0.9
171,333 + EX31_RS00785 0.81 -2.3
171,334 - EX31_RS00785 0.82 -2.7
171,344 + EX31_RS00785 0.83 +1.5
171,345 - EX31_RS00785 0.83 +0.0
171,345 - EX31_RS00785 0.83 +1.0
171,345 - EX31_RS00785 0.83 -1.3
171,345 - EX31_RS00785 0.83 +1.0

Or see this region's nucleotide sequence