Strain Fitness in Rahnella sp. WP5 around EX31_RS00525

Experiment: NLDM_metabolites (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_metabolites (C)
113,602	+		EX31_RS00515	0.53	+0.2
113,603	-		EX31_RS00515	0.54	-1.9
113,606	+		EX31_RS00515	0.54	-0.0
113,606	+		EX31_RS00515	0.54	+0.6
113,606	+		EX31_RS00515	0.54	-1.9
113,608	+		EX31_RS00515	0.54	-2.1
113,608	+		EX31_RS00515	0.54	-0.5
113,608	+		EX31_RS00515	0.54	-0.1
113,608	+		EX31_RS00515	0.54	-0.5
113,608	+		EX31_RS00515	0.54	+3.2
113,608	+		EX31_RS00515	0.54	-0.6
113,621	+		EX31_RS00515	0.56	-1.7
113,621	+		EX31_RS00515	0.56	+0.3
113,621	+		EX31_RS00515	0.56	+1.7
113,621	+		EX31_RS00515	0.56	-2.3
113,621	+		EX31_RS00515	0.56	-1.5
113,621	+		EX31_RS00515	0.56	-2.5
113,621	+		EX31_RS00515	0.56	-1.7
113,621	+		EX31_RS00515	0.56	-0.4
113,621	+		EX31_RS00515	0.56	+2.1
113,621	+		EX31_RS00515	0.56	+0.2
113,621	+		EX31_RS00515	0.56	-0.2
113,621	+		EX31_RS00515	0.56	+1.1
113,621	+		EX31_RS00515	0.56	-2.8
113,621	+		EX31_RS00515	0.56	-1.1
113,621	+		EX31_RS00515	0.56	-0.9
113,622	-		EX31_RS00515	0.56	+2.6
113,622	-		EX31_RS00515	0.56	-2.6
113,622	-		EX31_RS00515	0.56	+0.1
113,622	-		EX31_RS00515	0.56	-0.3
113,741	+		EX31_RS00515	0.70	-0.4
113,741	+		EX31_RS00515	0.70	-0.9
113,741	+		EX31_RS00515	0.70	-0.3
113,745	+		EX31_RS00515	0.71	+2.1
113,745	+		EX31_RS00515	0.71	+1.4
113,745	+		EX31_RS00515	0.71	-1.3
113,745	+		EX31_RS00515	0.71	-2.4
113,769	+		EX31_RS00515	0.74	-0.5
113,770	-		EX31_RS00515	0.74	+0.1
113,864	+		EX31_RS00515	0.86	+1.1
113,864	+		EX31_RS00515	0.86	-2.9
113,864	+		EX31_RS00515	0.86	+1.3
113,865	-		EX31_RS00515	0.86	-0.5
113,934	+				-3.1
113,934	+				-0.9
113,934	+				-0.5
113,934	+				-2.6
113,935	-				+0.1
113,971	+				-0.9
113,974	+				+0.1
113,974	+				-1.5
113,974	+				-2.3
113,974	+				+1.3
113,974	+				+1.4
113,975	-				-1.5
113,975	-				+2.7
113,994	+				-2.8
114,080	-		EX31_RS00520	0.20	-1.4
114,121	+		EX31_RS00520	0.28	+1.1
114,121	+		EX31_RS00520	0.28	-0.0
114,121	+		EX31_RS00520	0.28	-2.6
114,121	+		EX31_RS00520	0.28	-0.2
114,122	-		EX31_RS00520	0.28	+1.6
114,139	-		EX31_RS00520	0.32	-0.9
114,207	+		EX31_RS00520	0.46	-1.5
114,217	+		EX31_RS00520	0.48	-0.9
114,217	+		EX31_RS00520	0.48	-0.9
114,225	+		EX31_RS00520	0.50	-2.5
114,308	+		EX31_RS00520	0.67	-0.5
114,412	+		EX31_RS00520	0.89	-0.9
114,412	+		EX31_RS00520	0.89	+1.2
114,412	+		EX31_RS00520	0.89	-0.5
114,412	+		EX31_RS00520	0.89	+0.9
114,414	+		EX31_RS00520	0.89	-0.9
114,414	+		EX31_RS00520	0.89	-0.6
114,463	+				+0.9
114,517	-				-0.9
114,526	+				+1.8
114,527	-				+2.1
114,548	+				+1.8
114,580	+				+1.1
114,580	+				-1.5
114,580	+				-0.9
114,581	-				-1.7
114,581	-				+0.3
114,581	-				+0.9
114,581	-				-2.5
114,581	-				+1.9
114,581	-				+1.7
114,581	-				-2.3
114,581	-				+1.5
114,581	-				-1.7
114,581	-				-0.5
114,614	-		EX31_RS00525	0.12	+0.5
114,614	-		EX31_RS00525	0.12	+0.2
114,689	+		EX31_RS00525	0.21	+1.4
114,689	+		EX31_RS00525	0.21	+1.8
114,690	-		EX31_RS00525	0.21	-2.6
114,690	-		EX31_RS00525	0.21	-1.3
114,690	-		EX31_RS00525	0.21	-0.9
114,690	-		EX31_RS00525	0.21	+1.5
114,690	-		EX31_RS00525	0.21	-0.9
114,733	-		EX31_RS00525	0.26	+0.1
114,759	+		EX31_RS00525	0.30	-2.3
114,786	+		EX31_RS00525	0.33	-1.9
114,787	-		EX31_RS00525	0.33	-0.7
114,870	-		EX31_RS00525	0.44	+0.8
114,870	-		EX31_RS00525	0.44	-2.7
114,900	+		EX31_RS00525	0.47	-0.5
114,900	+		EX31_RS00525	0.47	+2.1
114,901	-		EX31_RS00525	0.47	-0.2
114,901	-		EX31_RS00525	0.47	+0.6
114,901	-		EX31_RS00525	0.47	-0.9
114,948	+		EX31_RS00525	0.53	+0.8
114,951	+		EX31_RS00525	0.54	+0.6
114,951	+		EX31_RS00525	0.54	-2.8
114,952	-		EX31_RS00525	0.54	-1.7
114,952	-		EX31_RS00525	0.54	-3.1
114,952	-		EX31_RS00525	0.54	-0.9
114,952	-		EX31_RS00525	0.54	+0.2
114,955	+		EX31_RS00525	0.54	+0.7
114,956	-		EX31_RS00525	0.54	-2.6
114,956	-		EX31_RS00525	0.54	+0.6
114,956	-		EX31_RS00525	0.54	-0.9
114,956	-		EX31_RS00525	0.54	-2.3
114,956	-		EX31_RS00525	0.54	+1.1
115,195	-		EX31_RS00525	0.84	-2.4
115,195	-		EX31_RS00525	0.84	-1.7
115,250	-				+1.8
115,283	-				-0.2
115,297	-				-0.5
115,297	-				+1.6
115,368	-		EX31_RS00530	0.21	-0.4
115,368	-		EX31_RS00530	0.21	+2.4
115,437	-		EX31_RS00530	0.48	-2.1
115,506	-		EX31_RS00530	0.75	-0.7
115,506	-		EX31_RS00530	0.75	+1.1
115,506	-		EX31_RS00530	0.75	+1.1
115,506	-		EX31_RS00530	0.75	-0.7
115,506	-		EX31_RS00530	0.75	-2.4
115,507	+		EX31_RS00530	0.76	+0.1
115,508	-		EX31_RS00530	0.76	+0.3
115,508	-		EX31_RS00530	0.76	-2.3
115,508	-		EX31_RS00530	0.76	-0.2
115,508	-		EX31_RS00530	0.76	+2.1
115,508	-		EX31_RS00530	0.76	-1.0
115,508	-		EX31_RS00530	0.76	-0.3
115,563	-				+0.2
115,563	-				+1.4
115,597	-				-3.3
115,599	-				+1.3
115,609	+				+0.3
115,742	+				-1.9
115,742	+				+0.8
115,742	+				+1.1
115,742	+				-1.7
115,742	+				-0.9
115,742	+				-2.8
115,742	+				+1.1
115,742	+				+1.5
115,742	+				-2.1
115,742	+				-1.5
115,743	-				-2.1
115,743	-				-0.9
115,743	-				-0.4
115,743	-				+0.4
115,743	-				+0.9
115,743	-				-1.9
115,747	+				+1.3
115,748	-				+0.6
115,751	+				-1.7
115,752	-				-2.3
115,862	+		EX31_RS00535	0.34	+1.1
115,863	-		EX31_RS00535	0.35	-1.5
115,937	+		EX31_RS00535	0.54	+1.8
115,958	+		EX31_RS00535	0.59	-0.1
115,964	+		EX31_RS00535	0.61	+1.1
115,965	-		EX31_RS00535	0.61	-0.2
115,967	+		EX31_RS00535	0.61	-1.5
115,967	+		EX31_RS00535	0.61	+0.5
115,967	+		EX31_RS00535	0.61	+1.1
115,967	+		EX31_RS00535	0.61	+2.6
115,968	-		EX31_RS00535	0.62	+0.2
115,968	-		EX31_RS00535	0.62	-0.9
115,968	-		EX31_RS00535	0.62	+0.8
115,971	+		EX31_RS00535	0.62	-2.3
115,971	+		EX31_RS00535	0.62	-1.7
115,971	+		EX31_RS00535	0.62	+0.7
115,971	+		EX31_RS00535	0.62	+1.7
115,972	-		EX31_RS00535	0.63	+0.1
115,994	+		EX31_RS00535	0.68	+0.1
115,994	+		EX31_RS00535	0.68	-0.5
115,994	+		EX31_RS00535	0.68	-1.7
115,994	+		EX31_RS00535	0.68	+1.4
115,994	+		EX31_RS00535	0.68	+0.5
115,994	+		EX31_RS00535	0.68	+1.1
115,994	+		EX31_RS00535	0.68	+1.1
115,995	-		EX31_RS00535	0.68	+2.1
115,995	-		EX31_RS00535	0.68	+0.1
115,995	-		EX31_RS00535	0.68	+0.8
115,998	+		EX31_RS00535	0.69	-0.5
116,049	+		EX31_RS00535	0.82	+0.6
116,050	-		EX31_RS00535	0.83	+2.0
116,082	-				+1.9
116,115	+				+1.1
116,127	-				-0.3
116,148	+				-1.2
116,158	+				+1.1
116,159	-				-2.5
116,195	+				-0.9
116,196	-				+0.4
116,319	+		EX31_RS00540	0.38	-1.3