Strain Fitness in Rahnella sp. WP5 around EX31_RS00430

Experiment: NLDM_metabolites (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_metabolites (C)
90,364	+		EX31_RS00425	0.34	-0.9
90,365	-		EX31_RS00425	0.34	+1.0
90,378	-		EX31_RS00425	0.35	+2.1
90,458	+		EX31_RS00425	0.40	-0.5
90,459	-		EX31_RS00425	0.41	+1.1
90,459	-		EX31_RS00425	0.41	+0.1
90,555	+		EX31_RS00425	0.47	-0.7
90,653	+		EX31_RS00425	0.54	+0.1
90,653	+		EX31_RS00425	0.54	+0.8
90,654	-		EX31_RS00425	0.54	+1.3
90,677	-		EX31_RS00425	0.56	-1.5
90,740	-		EX31_RS00425	0.60	+0.7
90,785	+		EX31_RS00425	0.64	+0.1
90,785	+		EX31_RS00425	0.64	+2.5
90,785	+		EX31_RS00425	0.64	+1.7
90,785	+		EX31_RS00425	0.64	-0.5
90,785	+		EX31_RS00425	0.64	+0.5
90,785	+		EX31_RS00425	0.64	-2.8
90,785	+		EX31_RS00425	0.64	-1.3
90,785	+		EX31_RS00425	0.64	-3.0
90,785	+		EX31_RS00425	0.64	+2.0
90,786	-		EX31_RS00425	0.64	+0.1
90,786	-		EX31_RS00425	0.64	-0.3
90,786	-		EX31_RS00425	0.64	-1.7
90,786	-		EX31_RS00425	0.64	-2.5
90,786	-		EX31_RS00425	0.64	-1.9
90,786	-		EX31_RS00425	0.64	+2.1
90,788	-		EX31_RS00425	0.64	+0.5
90,836	+		EX31_RS00425	0.67	+0.2
90,836	+		EX31_RS00425	0.67	-1.7
90,837	-		EX31_RS00425	0.67	-0.9
90,837	-		EX31_RS00425	0.67	-1.9
91,016	+		EX31_RS00425	0.80	-1.6
91,064	-		EX31_RS00425	0.83	+2.6
91,170	+				+1.6
91,315	+				-3.2
91,316	-				-2.3
91,316	-				+0.1
91,316	-				-0.5
91,316	-				+0.1
91,316	-				-2.3
91,316	-				+0.9
91,376	-				-0.8
91,552	-		EX31_RS00430	0.19	+0.9
91,622	-		EX31_RS00430	0.24	+1.3
91,622	-		EX31_RS00430	0.24	-0.1
91,622	-		EX31_RS00430	0.24	-0.5
91,671	-		EX31_RS00430	0.28	-1.7
91,671	-		EX31_RS00430	0.28	-2.3
91,671	-		EX31_RS00430	0.28	+0.9
91,769	-		EX31_RS00430	0.35	+1.7
92,007	+		EX31_RS00430	0.52	-1.3
92,007	+		EX31_RS00430	0.52	-1.7
92,008	-		EX31_RS00430	0.52	+1.6
92,091	-		EX31_RS00430	0.58	+1.3
92,196	-		EX31_RS00430	0.66	+2.2
92,217	-		EX31_RS00430	0.67	-2.9
92,217	-		EX31_RS00430	0.67	-0.9
92,229	-		EX31_RS00430	0.68	+2.2
92,318	+		EX31_RS00430	0.75	+1.1
92,666	+				+0.5
92,667	-				+3.2
92,667	-				-1.9
92,667	-				-0.3
92,682	-				+2.4
92,687	+				-1.5
92,745	-				+4.1
92,806	-				-2.6
92,828	+				+2.8
92,829	-				+1.0
92,829	-				-0.3
92,829	-				-1.4
92,829	-				-3.3
92,858	+				-1.7
92,858	+				-1.7
92,858	+				-1.5
92,859	-				+2.5
92,859	-				+0.8
92,859	-				+1.1
92,859	-				-2.3
92,859	-				+0.8
92,859	-				-0.1
92,859	-				-1.3
92,859	-				+1.5
92,859	-				-1.9
92,859	-				-2.1
92,859	-				-1.3
92,859	-				-0.4
92,859	-				-1.5
92,859	-				+0.9
92,859	-				-1.5
92,859	-				-0.8
92,942	+		EX31_RS00435	0.13	-0.5
92,967	-		EX31_RS00435	0.14	-1.4
92,967	-		EX31_RS00435	0.14	+1.1
92,967	-		EX31_RS00435	0.14	-2.1
92,976	-		EX31_RS00435	0.15	-2.1
92,997	+		EX31_RS00435	0.16	+0.7
92,998	-		EX31_RS00435	0.16	-1.7
92,998	-		EX31_RS00435	0.16	+1.2
92,998	-		EX31_RS00435	0.16	+0.5
92,998	-		EX31_RS00435	0.16	-0.6
92,998	-		EX31_RS00435	0.16	+1.1
92,998	-		EX31_RS00435	0.16	-0.2
92,998	-		EX31_RS00435	0.16	-0.9
92,998	-		EX31_RS00435	0.16	+1.4
92,998	-		EX31_RS00435	0.16	+0.6
92,998	-		EX31_RS00435	0.16	-0.9
92,999	+		EX31_RS00435	0.16	+0.1
92,999	+		EX31_RS00435	0.16	+0.7
92,999	+		EX31_RS00435	0.16	-0.9
92,999	+		EX31_RS00435	0.16	-2.3
92,999	+		EX31_RS00435	0.16	-2.0
92,999	+		EX31_RS00435	0.16	+2.4
93,000	-		EX31_RS00435	0.16	+1.4
93,000	-		EX31_RS00435	0.16	-3.0
93,000	-		EX31_RS00435	0.16	-0.5
93,000	-		EX31_RS00435	0.16	-1.9
93,000	-		EX31_RS00435	0.16	-2.1
93,000	-		EX31_RS00435	0.16	-1.3
93,000	-		EX31_RS00435	0.16	+0.8
93,000	-		EX31_RS00435	0.16	-0.9
93,000	-		EX31_RS00435	0.16	-0.9
93,000	-		EX31_RS00435	0.16	-0.1
93,000	-		EX31_RS00435	0.16	-1.9
93,000	-		EX31_RS00435	0.16	+1.1
93,000	-		EX31_RS00435	0.16	+1.6
93,000	-		EX31_RS00435	0.16	+0.8
93,000	-		EX31_RS00435	0.16	-1.5
93,005	+		EX31_RS00435	0.17	-0.5
93,005	+		EX31_RS00435	0.17	-0.0
93,005	+		EX31_RS00435	0.17	+0.3
93,018	-		EX31_RS00435	0.17	+0.9
93,078	+		EX31_RS00435	0.21	-2.9
93,079	-		EX31_RS00435	0.21	+0.7
93,079	-		EX31_RS00435	0.21	-0.7
93,079	-		EX31_RS00435	0.21	-0.4
93,079	-		EX31_RS00435	0.21	+0.6
93,079	-		EX31_RS00435	0.21	-0.3
93,079	-		EX31_RS00435	0.21	-1.3
93,081	-		EX31_RS00435	0.21	+2.9
93,098	+		EX31_RS00435	0.22	-2.8
93,098	+		EX31_RS00435	0.22	-2.4
93,099	-		EX31_RS00435	0.23	+1.1
93,139	-		EX31_RS00435	0.25	-0.4
93,139	-		EX31_RS00435	0.25	-2.6
93,139	-		EX31_RS00435	0.25	+1.5
93,170	+		EX31_RS00435	0.27	-0.3
93,171	-		EX31_RS00435	0.27	+1.5
93,171	-		EX31_RS00435	0.27	-0.5
93,297	-		EX31_RS00435	0.35	+1.2
93,297	-		EX31_RS00435	0.35	-1.9
93,297	-		EX31_RS00435	0.35	+0.1
93,299	-		EX31_RS00435	0.35	+3.2
93,328	-		EX31_RS00435	0.37	+0.7
93,351	+		EX31_RS00435	0.38	+2.9
93,351	+		EX31_RS00435	0.38	-0.2
93,352	-		EX31_RS00435	0.39	-0.9
93,352	-		EX31_RS00435	0.39	-1.7
93,352	-		EX31_RS00435	0.39	+0.9
93,437	+		EX31_RS00435	0.44	-2.5
93,437	+		EX31_RS00435	0.44	-1.5
93,438	-		EX31_RS00435	0.44	-0.3
93,438	-		EX31_RS00435	0.44	+1.4
93,438	-		EX31_RS00435	0.44	+1.5
93,438	-		EX31_RS00435	0.44	-1.9
93,438	-		EX31_RS00435	0.44	+1.1
93,438	-		EX31_RS00435	0.44	+0.5
93,459	-		EX31_RS00435	0.45	-0.5
93,519	-		EX31_RS00435	0.49	+2.4
93,531	+		EX31_RS00435	0.50	-2.5
93,563	+		EX31_RS00435	0.52	+1.2
93,563	+		EX31_RS00435	0.52	-0.1
93,563	+		EX31_RS00435	0.52	+0.8
93,563	+		EX31_RS00435	0.52	-1.9
93,564	-		EX31_RS00435	0.52	+1.5
93,564	-		EX31_RS00435	0.52	-1.9
93,564	-		EX31_RS00435	0.52	-2.5
93,564	-		EX31_RS00435	0.52	+1.2
93,564	-		EX31_RS00435	0.52	+3.2
93,564	-		EX31_RS00435	0.52	-2.8