Strain Fitness in Rahnella sp. WP5 around EX31_RS00180

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00175 and EX31_RS00180 are separated by 132 nucleotidesEX31_RS00180 and EX31_RS00185 are separated by 100 nucleotides EX31_RS00175: EX31_RS00175 - membrane protein, at 36,686 to 37,963 _RS00175 EX31_RS00180: EX31_RS00180 - aldehyde dehydrogenase family protein, at 38,096 to 39,481 _RS00180 EX31_RS00185: EX31_RS00185 - LysR family transcriptional regulator, at 39,582 to 40,466 _RS00185 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 37.102 kb on + strand, within EX31_RS00175at 37.102 kb on + strand, within EX31_RS00175at 37.102 kb on + strand, within EX31_RS00175at 37.102 kb on + strand, within EX31_RS00175at 37.103 kb on - strand, within EX31_RS00175at 37.103 kb on - strand, within EX31_RS00175at 37.103 kb on - strand, within EX31_RS00175at 37.103 kb on - strand, within EX31_RS00175at 37.106 kb on + strand, within EX31_RS00175at 37.106 kb on + strand, within EX31_RS00175at 37.107 kb on - strand, within EX31_RS00175at 37.107 kb on - strand, within EX31_RS00175at 37.107 kb on - strand, within EX31_RS00175at 37.107 kb on - strand, within EX31_RS00175at 37.110 kb on - strand, within EX31_RS00175at 37.120 kb on + strand, within EX31_RS00175at 37.121 kb on - strand, within EX31_RS00175at 37.233 kb on + strand, within EX31_RS00175at 37.233 kb on + strand, within EX31_RS00175at 37.241 kb on + strand, within EX31_RS00175at 37.241 kb on + strand, within EX31_RS00175at 37.241 kb on + strand, within EX31_RS00175at 37.242 kb on - strand, within EX31_RS00175at 37.243 kb on + strand, within EX31_RS00175at 37.243 kb on + strand, within EX31_RS00175at 37.243 kb on + strand, within EX31_RS00175at 37.244 kb on - strand, within EX31_RS00175at 37.256 kb on + strand, within EX31_RS00175at 37.256 kb on + strand, within EX31_RS00175at 37.257 kb on - strand, within EX31_RS00175at 37.258 kb on + strand, within EX31_RS00175at 37.280 kb on - strand, within EX31_RS00175at 37.356 kb on + strand, within EX31_RS00175at 37.357 kb on - strand, within EX31_RS00175at 37.380 kb on + strand, within EX31_RS00175at 37.380 kb on + strand, within EX31_RS00175at 37.390 kb on - strand, within EX31_RS00175at 37.390 kb on - strand, within EX31_RS00175at 37.433 kb on + strand, within EX31_RS00175at 37.433 kb on + strand, within EX31_RS00175at 37.459 kb on + strand, within EX31_RS00175at 37.471 kb on + strand, within EX31_RS00175at 37.534 kb on - strand, within EX31_RS00175at 37.551 kb on + strand, within EX31_RS00175at 37.627 kb on + strand, within EX31_RS00175at 37.687 kb on + strand, within EX31_RS00175at 37.747 kb on + strand, within EX31_RS00175at 37.820 kb on - strand, within EX31_RS00175at 37.836 kb on + strandat 37.836 kb on + strandat 37.837 kb on - strandat 37.837 kb on - strandat 37.842 kb on + strandat 37.843 kb on - strandat 37.843 kb on - strandat 37.846 kb on - strandat 37.846 kb on - strandat 37.957 kb on + strandat 37.957 kb on + strandat 38.098 kb on - strandat 38.101 kb on + strandat 38.101 kb on + strandat 38.102 kb on - strandat 38.102 kb on - strandat 38.231 kb on - strandat 38.231 kb on - strandat 38.231 kb on - strandat 38.231 kb on - strandat 38.234 kb on + strandat 38.235 kb on - strand, within EX31_RS00180at 38.235 kb on - strand, within EX31_RS00180at 38.235 kb on - strand, within EX31_RS00180at 38.235 kb on - strand, within EX31_RS00180at 38.292 kb on + strand, within EX31_RS00180at 38.387 kb on + strand, within EX31_RS00180at 38.388 kb on - strand, within EX31_RS00180at 38.388 kb on - strand, within EX31_RS00180at 38.388 kb on - strand, within EX31_RS00180at 38.435 kb on - strand, within EX31_RS00180at 38.445 kb on + strand, within EX31_RS00180at 38.445 kb on + strand, within EX31_RS00180at 38.446 kb on - strand, within EX31_RS00180at 38.449 kb on - strand, within EX31_RS00180at 38.568 kb on + strand, within EX31_RS00180at 38.568 kb on + strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.665 kb on + strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.696 kb on - strand, within EX31_RS00180at 38.761 kb on + strand, within EX31_RS00180at 38.761 kb on + strand, within EX31_RS00180at 38.762 kb on - strand, within EX31_RS00180at 38.762 kb on - strand, within EX31_RS00180at 38.917 kb on + strand, within EX31_RS00180at 39.007 kb on + strand, within EX31_RS00180at 39.007 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.086 kb on - strand, within EX31_RS00180at 39.122 kb on - strand, within EX31_RS00180at 39.122 kb on - strand, within EX31_RS00180at 39.122 kb on - strand, within EX31_RS00180at 39.187 kb on - strand, within EX31_RS00180at 39.245 kb on - strand, within EX31_RS00180at 39.275 kb on - strand, within EX31_RS00180at 39.275 kb on - strand, within EX31_RS00180at 39.275 kb on - strand, within EX31_RS00180at 39.310 kb on + strand, within EX31_RS00180at 39.358 kb on + strandat 39.358 kb on + strandat 39.361 kb on - strandat 39.361 kb on - strandat 39.482 kb on + strandat 39.482 kb on + strandat 39.482 kb on + strandat 39.483 kb on - strandat 39.483 kb on - strandat 39.483 kb on - strandat 39.483 kb on - strandat 39.497 kb on + strandat 39.497 kb on + strandat 39.516 kb on - strandat 39.555 kb on + strandat 39.556 kb on - strandat 39.632 kb on + strandat 39.689 kb on + strand, within EX31_RS00185at 39.721 kb on + strand, within EX31_RS00185at 39.721 kb on + strand, within EX31_RS00185at 39.780 kb on + strand, within EX31_RS00185at 39.781 kb on - strand, within EX31_RS00185at 39.781 kb on - strand, within EX31_RS00185at 39.977 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.058 kb on + strand, within EX31_RS00185at 40.087 kb on + strand, within EX31_RS00185at 40.087 kb on + strand, within EX31_RS00185at 40.087 kb on + strand, within EX31_RS00185at 40.137 kb on + strand, within EX31_RS00185at 40.233 kb on + strand, within EX31_RS00185at 40.233 kb on + strand, within EX31_RS00185at 40.233 kb on + strand, within EX31_RS00185at 40.292 kb on + strand, within EX31_RS00185at 40.292 kb on + strand, within EX31_RS00185at 40.292 kb on + strand, within EX31_RS00185at 40.292 kb on + strand, within EX31_RS00185at 40.305 kb on - strand, within EX31_RS00185at 40.351 kb on - strand, within EX31_RS00185at 40.351 kb on - strand, within EX31_RS00185

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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37,102 + EX31_RS00175 0.33 -0.5
37,102 + EX31_RS00175 0.33 +0.6
37,102 + EX31_RS00175 0.33 -0.5
37,102 + EX31_RS00175 0.33 -1.7
37,103 - EX31_RS00175 0.33 +0.1
37,103 - EX31_RS00175 0.33 +0.1
37,103 - EX31_RS00175 0.33 -0.5
37,103 - EX31_RS00175 0.33 -1.5
37,106 + EX31_RS00175 0.33 +0.5
37,106 + EX31_RS00175 0.33 -1.6
37,107 - EX31_RS00175 0.33 -1.7
37,107 - EX31_RS00175 0.33 +2.3
37,107 - EX31_RS00175 0.33 +0.1
37,107 - EX31_RS00175 0.33 -2.9
37,110 - EX31_RS00175 0.33 -0.5
37,120 + EX31_RS00175 0.34 +1.6
37,121 - EX31_RS00175 0.34 +1.0
37,233 + EX31_RS00175 0.43 -1.5
37,233 + EX31_RS00175 0.43 -1.5
37,241 + EX31_RS00175 0.43 -1.9
37,241 + EX31_RS00175 0.43 +2.3
37,241 + EX31_RS00175 0.43 +1.9
37,242 - EX31_RS00175 0.44 -0.9
37,243 + EX31_RS00175 0.44 -2.4
37,243 + EX31_RS00175 0.44 -0.9
37,243 + EX31_RS00175 0.44 -0.9
37,244 - EX31_RS00175 0.44 +0.4
37,256 + EX31_RS00175 0.45 -0.9
37,256 + EX31_RS00175 0.45 +0.1
37,257 - EX31_RS00175 0.45 -2.4
37,258 + EX31_RS00175 0.45 +0.1
37,280 - EX31_RS00175 0.46 -0.9
37,356 + EX31_RS00175 0.52 -0.4
37,357 - EX31_RS00175 0.53 +0.7
37,380 + EX31_RS00175 0.54 +3.4
37,380 + EX31_RS00175 0.54 -2.3
37,390 - EX31_RS00175 0.55 -2.3
37,390 - EX31_RS00175 0.55 -3.1
37,433 + EX31_RS00175 0.58 -0.8
37,433 + EX31_RS00175 0.58 +1.9
37,459 + EX31_RS00175 0.60 -2.7
37,471 + EX31_RS00175 0.61 +0.1
37,534 - EX31_RS00175 0.66 +1.1
37,551 + EX31_RS00175 0.68 -1.5
37,627 + EX31_RS00175 0.74 +1.1
37,687 + EX31_RS00175 0.78 +0.2
37,747 + EX31_RS00175 0.83 +2.1
37,820 - EX31_RS00175 0.89 -1.3
37,836 + +1.8
37,836 + +3.1
37,837 - +1.3
37,837 - +0.3
37,842 + +0.1
37,843 - +1.4
37,843 - -0.1
37,846 - +1.5
37,846 - +0.2
37,957 + +1.0
37,957 + +0.3
38,098 - +1.1
38,101 + -0.5
38,101 + +0.2
38,102 - -2.1
38,102 - -1.5
38,231 - +2.6
38,231 - -0.2
38,231 - +0.3
38,231 - +0.2
38,234 + +3.4
38,235 - EX31_RS00180 0.10 -3.5
38,235 - EX31_RS00180 0.10 -0.5
38,235 - EX31_RS00180 0.10 -2.1
38,235 - EX31_RS00180 0.10 +1.3
38,292 + EX31_RS00180 0.14 -2.9
38,387 + EX31_RS00180 0.21 +1.5
38,388 - EX31_RS00180 0.21 -1.5
38,388 - EX31_RS00180 0.21 -1.5
38,388 - EX31_RS00180 0.21 -1.6
38,435 - EX31_RS00180 0.24 +2.3
38,445 + EX31_RS00180 0.25 -0.4
38,445 + EX31_RS00180 0.25 +5.3
38,446 - EX31_RS00180 0.25 +0.1
38,449 - EX31_RS00180 0.25 +1.1
38,568 + EX31_RS00180 0.34 +0.3
38,568 + EX31_RS00180 0.34 -0.9
38,569 - EX31_RS00180 0.34 +1.4
38,569 - EX31_RS00180 0.34 +1.3
38,569 - EX31_RS00180 0.34 +2.9
38,569 - EX31_RS00180 0.34 -0.2
38,569 - EX31_RS00180 0.34 -1.5
38,569 - EX31_RS00180 0.34 -0.7
38,569 - EX31_RS00180 0.34 +1.6
38,569 - EX31_RS00180 0.34 +0.8
38,569 - EX31_RS00180 0.34 -1.3
38,665 + EX31_RS00180 0.41 +0.2
38,666 - EX31_RS00180 0.41 +1.1
38,666 - EX31_RS00180 0.41 +1.8
38,666 - EX31_RS00180 0.41 -0.7
38,666 - EX31_RS00180 0.41 -2.1
38,696 - EX31_RS00180 0.43 -0.1
38,761 + EX31_RS00180 0.48 -3.0
38,761 + EX31_RS00180 0.48 +2.2
38,762 - EX31_RS00180 0.48 -2.8
38,762 - EX31_RS00180 0.48 -0.6
38,917 + EX31_RS00180 0.59 -1.7
39,007 + EX31_RS00180 0.66 +1.2
39,007 + EX31_RS00180 0.66 +0.1
39,019 + EX31_RS00180 0.67 -1.3
39,019 + EX31_RS00180 0.67 -2.4
39,019 + EX31_RS00180 0.67 -1.5
39,019 + EX31_RS00180 0.67 +0.2
39,019 + EX31_RS00180 0.67 -1.7
39,020 - EX31_RS00180 0.67 +0.3
39,020 - EX31_RS00180 0.67 -0.5
39,020 - EX31_RS00180 0.67 -0.9
39,020 - EX31_RS00180 0.67 +0.7
39,020 - EX31_RS00180 0.67 -0.7
39,086 - EX31_RS00180 0.71 -1.6
39,122 - EX31_RS00180 0.74 -0.9
39,122 - EX31_RS00180 0.74 -1.5
39,122 - EX31_RS00180 0.74 +0.1
39,187 - EX31_RS00180 0.79 +0.4
39,245 - EX31_RS00180 0.83 -0.2
39,275 - EX31_RS00180 0.85 +1.6
39,275 - EX31_RS00180 0.85 -1.9
39,275 - EX31_RS00180 0.85 -1.9
39,310 + EX31_RS00180 0.88 +0.1
39,358 + -1.7
39,358 + -2.3
39,361 - +0.1
39,361 - -1.7
39,482 + +0.9
39,482 + -1.7
39,482 + +0.3
39,483 - -2.6
39,483 - -1.7
39,483 - +0.4
39,483 - -0.5
39,497 + -0.3
39,497 + +4.5
39,516 - -0.9
39,555 + -2.4
39,556 - -0.9
39,632 + -1.5
39,689 + EX31_RS00185 0.12 -1.5
39,721 + EX31_RS00185 0.16 +2.3
39,721 + EX31_RS00185 0.16 -2.1
39,780 + EX31_RS00185 0.22 +0.7
39,781 - EX31_RS00185 0.22 +0.1
39,781 - EX31_RS00185 0.22 +0.6
39,977 + EX31_RS00185 0.45 +1.3
40,056 + EX31_RS00185 0.54 +2.3
40,056 + EX31_RS00185 0.54 -1.7
40,056 + EX31_RS00185 0.54 -1.3
40,056 + EX31_RS00185 0.54 -2.4
40,056 + EX31_RS00185 0.54 +0.9
40,056 + EX31_RS00185 0.54 -0.9
40,056 + EX31_RS00185 0.54 -0.8
40,058 + EX31_RS00185 0.54 +1.0
40,087 + EX31_RS00185 0.57 -0.8
40,087 + EX31_RS00185 0.57 -1.7
40,087 + EX31_RS00185 0.57 -1.8
40,137 + EX31_RS00185 0.63 -0.1
40,233 + EX31_RS00185 0.74 +1.5
40,233 + EX31_RS00185 0.74 +1.1
40,233 + EX31_RS00185 0.74 -2.5
40,292 + EX31_RS00185 0.80 -0.7
40,292 + EX31_RS00185 0.80 +1.0
40,292 + EX31_RS00185 0.80 -0.3
40,292 + EX31_RS00185 0.80 +1.3
40,305 - EX31_RS00185 0.82 -2.7
40,351 - EX31_RS00185 0.87 -1.9
40,351 - EX31_RS00185 0.87 +1.1

Or see this region's nucleotide sequence