Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25430

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS25425 and CA265_RS25430 are separated by 1 nucleotidesCA265_RS25430 and CA265_RS25435 are separated by 0 nucleotidesCA265_RS25435 and CA265_RS25440 are separated by 17 nucleotides CA265_RS25425: CA265_RS25425 - NAD-dependent dehydratase, at 6,173,981 to 6,175,009 _RS25425 CA265_RS25430: CA265_RS25430 - UDP-glucose 4-epimerase GalE, at 6,175,011 to 6,176,033 _RS25430 CA265_RS25435: CA265_RS25435 - hypothetical protein, at 6,176,034 to 6,176,591 _RS25435 CA265_RS25440: CA265_RS25440 - capsular biosynthesis protein, at 6,176,609 to 6,177,346 _RS25440 Position (kb) 6175 6176 6177Strain fitness (log2 ratio) -1 0 1at 6176.016 kb on - strandat 6176.105 kb on - strand, within CA265_RS25435at 6176.306 kb on + strand, within CA265_RS25435at 6176.455 kb on + strand, within CA265_RS25435at 6176.459 kb on + strand, within CA265_RS25435at 6176.513 kb on + strand, within CA265_RS25435at 6176.525 kb on + strand, within CA265_RS25435at 6176.540 kb on + strandat 6176.545 kb on + strandat 6176.603 kb on - strandat 6176.760 kb on + strand, within CA265_RS25440at 6176.909 kb on + strand, within CA265_RS25440at 6176.956 kb on - strand, within CA265_RS25440at 6176.989 kb on - strand, within CA265_RS25440at 6176.989 kb on - strand, within CA265_RS25440at 6177.026 kb on - strand, within CA265_RS25440at 6177.028 kb on - strand, within CA265_RS25440

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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6,176,016 - +0.0
6,176,105 - CA265_RS25435 0.13 +0.2
6,176,306 + CA265_RS25435 0.49 +1.7
6,176,455 + CA265_RS25435 0.75 +0.5
6,176,459 + CA265_RS25435 0.76 +0.9
6,176,513 + CA265_RS25435 0.86 +0.8
6,176,525 + CA265_RS25435 0.88 +0.9
6,176,540 + +1.6
6,176,545 + +0.1
6,176,603 - -1.4
6,176,760 + CA265_RS25440 0.20 +1.1
6,176,909 + CA265_RS25440 0.41 +1.4
6,176,956 - CA265_RS25440 0.47 -0.9
6,176,989 - CA265_RS25440 0.51 +0.3
6,176,989 - CA265_RS25440 0.51 -0.9
6,177,026 - CA265_RS25440 0.57 -1.1
6,177,028 - CA265_RS25440 0.57 -0.9

Or see this region's nucleotide sequence