Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24325 and CA265_RS24330 are separated by 55 nucleotides CA265_RS24330 and CA265_RS24335 are separated by 76 nucleotides CA265_RS24335 and CA265_RS24340 are separated by 83 nucleotides
CA265_RS24325: CA265_RS24325 - hypothetical protein, at 5,919,857 to 5,922,679
_RS24325
CA265_RS24330: CA265_RS24330 - hypothetical protein, at 5,922,735 to 5,924,597
_RS24330
CA265_RS24335: CA265_RS24335 - hypothetical protein, at 5,924,674 to 5,925,414
_RS24335
CA265_RS24340: CA265_RS24340 - hypothetical protein, at 5,925,498 to 5,929,457
_RS24340
Position (kb) 5922
5923
5924
5925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5921.860 kb on + strand, within CA265_RS24325 at 5921.943 kb on - strand, within CA265_RS24325 at 5922.011 kb on - strand, within CA265_RS24325 at 5922.038 kb on - strand, within CA265_RS24325 at 5922.073 kb on + strand, within CA265_RS24325 at 5922.143 kb on - strand, within CA265_RS24325 at 5922.154 kb on + strand, within CA265_RS24325 at 5922.155 kb on - strand, within CA265_RS24325 at 5922.164 kb on - strand, within CA265_RS24325 at 5922.164 kb on - strand, within CA265_RS24325 at 5922.218 kb on - strand, within CA265_RS24325 at 5922.251 kb on + strand, within CA265_RS24325 at 5922.317 kb on + strand, within CA265_RS24325 at 5922.317 kb on + strand, within CA265_RS24325 at 5922.356 kb on - strand, within CA265_RS24325 at 5922.398 kb on - strand at 5922.486 kb on + strand at 5922.487 kb on - strand at 5922.491 kb on + strand at 5922.491 kb on + strand at 5922.491 kb on + strand at 5922.492 kb on - strand at 5922.492 kb on - strand at 5922.506 kb on - strand at 5922.552 kb on + strand at 5922.611 kb on - strand at 5922.627 kb on + strand at 5922.643 kb on - strand at 5922.705 kb on - strand at 5922.727 kb on - strand at 5922.732 kb on + strand at 5922.866 kb on + strand at 5922.913 kb on + strand at 5922.968 kb on - strand, within CA265_RS24330 at 5922.968 kb on - strand, within CA265_RS24330 at 5922.968 kb on - strand, within CA265_RS24330 at 5922.973 kb on + strand, within CA265_RS24330 at 5923.012 kb on + strand, within CA265_RS24330 at 5923.014 kb on + strand, within CA265_RS24330 at 5923.015 kb on - strand, within CA265_RS24330 at 5923.046 kb on - strand, within CA265_RS24330 at 5923.083 kb on + strand, within CA265_RS24330 at 5923.085 kb on + strand, within CA265_RS24330 at 5923.086 kb on - strand, within CA265_RS24330 at 5923.137 kb on + strand, within CA265_RS24330 at 5923.138 kb on - strand, within CA265_RS24330 at 5923.143 kb on - strand, within CA265_RS24330 at 5923.181 kb on - strand, within CA265_RS24330 at 5923.211 kb on - strand, within CA265_RS24330 at 5923.244 kb on + strand, within CA265_RS24330 at 5923.245 kb on - strand, within CA265_RS24330 at 5923.341 kb on + strand, within CA265_RS24330 at 5923.384 kb on + strand, within CA265_RS24330 at 5923.463 kb on + strand, within CA265_RS24330 at 5923.467 kb on - strand, within CA265_RS24330 at 5923.508 kb on - strand, within CA265_RS24330 at 5923.508 kb on - strand, within CA265_RS24330 at 5923.525 kb on - strand, within CA265_RS24330 at 5923.601 kb on + strand, within CA265_RS24330 at 5923.764 kb on + strand, within CA265_RS24330 at 5923.764 kb on + strand, within CA265_RS24330 at 5923.764 kb on + strand, within CA265_RS24330 at 5923.765 kb on - strand, within CA265_RS24330 at 5923.765 kb on - strand, within CA265_RS24330 at 5923.768 kb on + strand, within CA265_RS24330 at 5923.768 kb on + strand, within CA265_RS24330 at 5923.844 kb on + strand, within CA265_RS24330 at 5923.845 kb on - strand, within CA265_RS24330 at 5923.900 kb on - strand, within CA265_RS24330 at 5923.900 kb on - strand, within CA265_RS24330 at 5923.951 kb on + strand, within CA265_RS24330 at 5923.976 kb on + strand, within CA265_RS24330 at 5924.189 kb on + strand, within CA265_RS24330 at 5924.215 kb on + strand, within CA265_RS24330 at 5924.237 kb on - strand, within CA265_RS24330 at 5924.256 kb on + strand, within CA265_RS24330 at 5924.257 kb on - strand, within CA265_RS24330 at 5924.257 kb on - strand, within CA265_RS24330 at 5924.276 kb on - strand, within CA265_RS24330 at 5924.278 kb on + strand, within CA265_RS24330 at 5924.279 kb on - strand, within CA265_RS24330 at 5924.279 kb on - strand, within CA265_RS24330 at 5924.324 kb on - strand, within CA265_RS24330 at 5924.324 kb on - strand, within CA265_RS24330 at 5924.324 kb on - strand, within CA265_RS24330 at 5924.324 kb on - strand, within CA265_RS24330 at 5924.430 kb on - strand at 5924.463 kb on - strand at 5924.467 kb on + strand at 5924.467 kb on + strand at 5924.468 kb on - strand at 5924.468 kb on - strand at 5924.489 kb on - strand at 5924.495 kb on + strand at 5924.519 kb on + strand at 5924.540 kb on - strand at 5924.562 kb on - strand at 5924.572 kb on + strand at 5924.600 kb on - strand at 5924.608 kb on + strand at 5924.609 kb on - strand at 5924.685 kb on - strand at 5924.711 kb on + strand at 5924.745 kb on + strand at 5924.791 kb on + strand, within CA265_RS24335 at 5924.807 kb on + strand, within CA265_RS24335 at 5924.808 kb on - strand, within CA265_RS24335 at 5924.893 kb on + strand, within CA265_RS24335 at 5925.008 kb on - strand, within CA265_RS24335 at 5925.012 kb on + strand at 5925.076 kb on - strand, within CA265_RS24335 at 5925.124 kb on - strand, within CA265_RS24335 at 5925.202 kb on + strand, within CA265_RS24335 at 5925.203 kb on - strand, within CA265_RS24335 at 5925.203 kb on - strand, within CA265_RS24335 at 5925.235 kb on - strand, within CA265_RS24335 at 5925.290 kb on - strand, within CA265_RS24335 at 5925.335 kb on - strand, within CA265_RS24335 at 5925.367 kb on + strand at 5925.432 kb on + strand at 5925.440 kb on - strand at 5925.451 kb on + strand at 5925.452 kb on - strand at 5925.475 kb on + strand at 5925.475 kb on + strand at 5925.510 kb on - strand at 5925.594 kb on + strand at 5925.594 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 5,921,860 + CA265_RS24325 0.71 +0.2 5,921,943 - CA265_RS24325 0.74 +0.7 5,922,011 - CA265_RS24325 0.76 -1.0 5,922,038 - CA265_RS24325 0.77 -0.4 5,922,073 + CA265_RS24325 0.78 +0.2 5,922,143 - CA265_RS24325 0.81 -0.4 5,922,154 + CA265_RS24325 0.81 +2.1 5,922,155 - CA265_RS24325 0.81 +0.1 5,922,164 - CA265_RS24325 0.82 -0.7 5,922,164 - CA265_RS24325 0.82 -1.6 5,922,218 - CA265_RS24325 0.84 -0.4 5,922,251 + CA265_RS24325 0.85 -2.5 5,922,317 + CA265_RS24325 0.87 -0.5 5,922,317 + CA265_RS24325 0.87 -0.8 5,922,356 - CA265_RS24325 0.89 +0.0 5,922,398 - -0.5 5,922,486 + -0.2 5,922,487 - -0.4 5,922,491 + -1.6 5,922,491 + +0.8 5,922,491 + -0.2 5,922,492 - +0.4 5,922,492 - +0.5 5,922,506 - -1.5 5,922,552 + +1.0 5,922,611 - +0.0 5,922,627 + +1.0 5,922,643 - +0.8 5,922,705 - +0.5 5,922,727 - +0.2 5,922,732 + -2.5 5,922,866 + +0.2 5,922,913 + -0.7 5,922,968 - CA265_RS24330 0.13 -0.0 5,922,968 - CA265_RS24330 0.13 +1.2 5,922,968 - CA265_RS24330 0.13 +0.4 5,922,973 + CA265_RS24330 0.13 +1.8 5,923,012 + CA265_RS24330 0.15 -1.6 5,923,014 + CA265_RS24330 0.15 -0.7 5,923,015 - CA265_RS24330 0.15 +0.3 5,923,046 - CA265_RS24330 0.17 +0.9 5,923,083 + CA265_RS24330 0.19 +0.1 5,923,085 + CA265_RS24330 0.19 +0.2 5,923,086 - CA265_RS24330 0.19 -1.5 5,923,137 + CA265_RS24330 0.22 -1.4 5,923,138 - CA265_RS24330 0.22 +0.8 5,923,143 - CA265_RS24330 0.22 -0.7 5,923,181 - CA265_RS24330 0.24 +0.4 5,923,211 - CA265_RS24330 0.26 -0.6 5,923,244 + CA265_RS24330 0.27 -1.6 5,923,245 - CA265_RS24330 0.27 -0.2 5,923,341 + CA265_RS24330 0.33 -0.1 5,923,384 + CA265_RS24330 0.35 +1.3 5,923,463 + CA265_RS24330 0.39 -2.8 5,923,467 - CA265_RS24330 0.39 +1.4 5,923,508 - CA265_RS24330 0.41 -0.5 5,923,508 - CA265_RS24330 0.41 -0.6 5,923,525 - CA265_RS24330 0.42 +1.4 5,923,601 + CA265_RS24330 0.46 +0.9 5,923,764 + CA265_RS24330 0.55 -0.8 5,923,764 + CA265_RS24330 0.55 -2.2 5,923,764 + CA265_RS24330 0.55 -2.0 5,923,765 - CA265_RS24330 0.55 +0.7 5,923,765 - CA265_RS24330 0.55 -1.0 5,923,768 + CA265_RS24330 0.55 +0.6 5,923,768 + CA265_RS24330 0.55 +3.1 5,923,844 + CA265_RS24330 0.60 +1.2 5,923,845 - CA265_RS24330 0.60 -1.5 5,923,900 - CA265_RS24330 0.63 +0.1 5,923,900 - CA265_RS24330 0.63 +0.5 5,923,951 + CA265_RS24330 0.65 -0.5 5,923,976 + CA265_RS24330 0.67 +0.9 5,924,189 + CA265_RS24330 0.78 -1.3 5,924,215 + CA265_RS24330 0.79 +1.0 5,924,237 - CA265_RS24330 0.81 +0.7 5,924,256 + CA265_RS24330 0.82 -2.0 5,924,257 - CA265_RS24330 0.82 +0.1 5,924,257 - CA265_RS24330 0.82 +0.8 5,924,276 - CA265_RS24330 0.83 -0.3 5,924,278 + CA265_RS24330 0.83 -0.2 5,924,279 - CA265_RS24330 0.83 -0.3 5,924,279 - CA265_RS24330 0.83 -0.7 5,924,324 - CA265_RS24330 0.85 -0.6 5,924,324 - CA265_RS24330 0.85 +0.1 5,924,324 - CA265_RS24330 0.85 -0.1 5,924,324 - CA265_RS24330 0.85 -0.0 5,924,430 - -0.2 5,924,463 - +0.3 5,924,467 + -0.2 5,924,467 + -1.1 5,924,468 - -0.3 5,924,468 - +0.5 5,924,489 - -1.7 5,924,495 + -1.6 5,924,519 + -0.9 5,924,540 - -0.1 5,924,562 - -0.3 5,924,572 + +0.0 5,924,600 - +0.4 5,924,608 + +0.7 5,924,609 - -0.3 5,924,685 - -1.2 5,924,711 + +0.4 5,924,745 + -0.6 5,924,791 + CA265_RS24335 0.16 +0.4 5,924,807 + CA265_RS24335 0.18 +0.0 5,924,808 - CA265_RS24335 0.18 -0.1 5,924,893 + CA265_RS24335 0.30 -0.1 5,925,008 - CA265_RS24335 0.45 +0.1 5,925,012 + +0.8 5,925,076 - CA265_RS24335 0.54 -2.5 5,925,124 - CA265_RS24335 0.61 -0.2 5,925,202 + CA265_RS24335 0.71 -0.6 5,925,203 - CA265_RS24335 0.71 +1.9 5,925,203 - CA265_RS24335 0.71 -0.5 5,925,235 - CA265_RS24335 0.76 -0.3 5,925,290 - CA265_RS24335 0.83 +0.8 5,925,335 - CA265_RS24335 0.89 -0.2 5,925,367 + -0.2 5,925,432 + -0.7 5,925,440 - +0.5 5,925,451 + +1.4 5,925,452 - -1.0 5,925,475 + -0.2 5,925,475 + -1.6 5,925,510 - +0.1 5,925,594 + +0.0 5,925,594 + -1.3
Or see this region's nucleotide sequence