Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23440

Experiment: L-Valine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (N)
5,731,027	+		CA265_RS23435	0.14	+0.4
5,731,028	-		CA265_RS23435	0.14	-0.3
5,731,096	-		CA265_RS23435	0.23	+0.6
5,731,097	+		CA265_RS23435	0.23	+0.5
5,731,147	+		CA265_RS23435	0.30	-0.9
5,731,148	-		CA265_RS23435	0.30	+1.2
5,731,165	+		CA265_RS23435	0.32	-1.1
5,731,169	-		CA265_RS23435	0.33	-0.6
5,731,214	-		CA265_RS23435	0.39	+0.1
5,731,233	+		CA265_RS23435	0.41	+0.4
5,731,234	-		CA265_RS23435	0.41	-2.1
5,731,238	+		CA265_RS23435	0.42	-1.0
5,731,239	-		CA265_RS23435	0.42	+1.0
5,731,239	-		CA265_RS23435	0.42	+0.8
5,731,241	-		CA265_RS23435	0.42	-2.1
5,731,253	-		CA265_RS23435	0.44	+0.4
5,731,273	+		CA265_RS23435	0.47	-0.8
5,731,273	+		CA265_RS23435	0.47	-1.3
5,731,325	-		CA265_RS23435	0.53	+0.8
5,731,351	-		CA265_RS23435	0.57	-0.3
5,731,352	+		CA265_RS23435	0.57	-0.1
5,731,353	-		CA265_RS23435	0.57	+0.1
5,731,353	-		CA265_RS23435	0.57	-0.8
5,731,353	-		CA265_RS23435	0.57	+1.0
5,731,373	+		CA265_RS23435	0.60	+1.8
5,731,386	-		CA265_RS23435	0.62	+0.3
5,731,390	+		CA265_RS23435	0.62	-0.4
5,731,390	+		CA265_RS23435	0.62	+0.0
5,731,402	+		CA265_RS23435	0.64	+0.3
5,731,445	+		CA265_RS23435	0.69	-0.6
5,731,461	+		CA265_RS23435	0.71	+0.8
5,731,501	+		CA265_RS23435	0.77	-1.2
5,731,502	-		CA265_RS23435	0.77	+0.8
5,731,574	-		CA265_RS23435	0.86	+0.1
5,731,592	-		CA265_RS23435	0.89	+0.2
5,731,617	+				+0.1
5,731,618	-				+0.6
5,731,675	-				+0.6
5,731,685	-				-0.5
5,731,695	+				-1.2
5,731,695	+				-0.2
5,731,797	+				-3.1
5,731,852	-				-1.6
5,731,893	-				+0.4
5,731,898	+				-1.2
5,731,930	+				-2.0
5,731,940	-				-3.1
5,731,946	+				-2.7
5,731,949	+				-1.7
5,731,949	+				-1.4
5,731,950	-				-2.3
5,731,955	-				-3.8
5,731,969	-				-0.6
5,732,025	-				-2.4
5,732,027	-				-2.5
5,732,027	-				-4.1
5,732,027	-				-1.7
5,732,027	-				-2.1
5,732,076	-				-4.1
5,732,091	+				-1.4
5,732,093	+				-1.2
5,732,094	-				-4.2
5,732,094	-				-4.4
5,732,149	+				-3.1
5,732,195	+				-1.3
5,732,196	-				-0.6
5,732,204	-				-3.3
5,732,214	+				-3.4
5,732,255	+				-0.9
5,732,256	-				-4.4
5,732,259	-				-3.0
5,732,378	+				-2.7
5,732,399	+		CA265_RS23440	0.10	-3.2
5,732,400	-		CA265_RS23440	0.10	-1.3
5,732,440	+		CA265_RS23440	0.11	-1.0
5,732,490	+		CA265_RS23440	0.13	-1.7
5,732,533	+		CA265_RS23440	0.14	-2.5
5,732,534	-		CA265_RS23440	0.14	-2.2
5,732,534	-		CA265_RS23440	0.14	-3.5
5,732,537	-		CA265_RS23440	0.14	-3.1
5,732,537	-		CA265_RS23440	0.14	-3.8
5,732,564	-		CA265_RS23440	0.15	-1.7
5,732,564	-		CA265_RS23440	0.15	-2.9
5,732,608	+		CA265_RS23440	0.16	-3.1
5,732,609	-		CA265_RS23440	0.16	-3.6
5,732,726	-		CA265_RS23440	0.19	-1.5
5,732,729	+		CA265_RS23440	0.19	-1.3
5,732,854	-		CA265_RS23440	0.23	-2.7
5,732,897	+		CA265_RS23440	0.24	-2.7
5,732,940	-		CA265_RS23440	0.25	-1.8
5,732,942	+		CA265_RS23440	0.25	-2.4
5,732,955	-		CA265_RS23440	0.25	-3.7
5,732,955	-		CA265_RS23440	0.25	-1.7
5,732,964	-		CA265_RS23440	0.26	-4.1
5,732,970	-		CA265_RS23440	0.26	-2.5
5,733,053	+		CA265_RS23440	0.28	-0.4
5,733,074	-		CA265_RS23440	0.28	-2.1
5,733,095	+		CA265_RS23440	0.29	-2.5
5,733,167	-		CA265_RS23440	0.31	-2.4
5,733,311	+		CA265_RS23440	0.35	-1.6
5,733,337	+		CA265_RS23440	0.36	+0.1
5,733,429	+		CA265_RS23440	0.38	-2.3
5,733,430	-		CA265_RS23440	0.38	-2.8
5,733,517	-		CA265_RS23440	0.40	-3.8
5,733,517	-		CA265_RS23440	0.40	-3.8
5,733,517	-		CA265_RS23440	0.40	-4.6
5,733,558	-		CA265_RS23440	0.42	-3.3
5,733,561	-		CA265_RS23440	0.42	-5.3
5,733,616	-		CA265_RS23440	0.43	-2.4
5,733,672	-		CA265_RS23440	0.45	-3.8
5,733,719	+		CA265_RS23440	0.46	-2.0
5,733,723	-		CA265_RS23440	0.46	-0.9
5,733,778	+		CA265_RS23440	0.48	-0.6
5,733,779	-		CA265_RS23440	0.48	-2.3
5,733,779	-		CA265_RS23440	0.48	-3.2
5,733,903	+		CA265_RS23440	0.51	-0.2
5,734,015	-		CA265_RS23440	0.54	-4.3
5,734,051	-		CA265_RS23440	0.55	-2.9
5,734,051	-		CA265_RS23440	0.55	-2.3
5,734,106	-		CA265_RS23440	0.56	-3.9
5,734,106	-		CA265_RS23440	0.56	-5.4
5,734,185	+		CA265_RS23440	0.59	-1.4
5,734,190	-		CA265_RS23440	0.59	-1.9
5,734,259	-		CA265_RS23440	0.61	-4.3
5,734,259	-		CA265_RS23440	0.61	-2.6
5,734,259	-		CA265_RS23440	0.61	-3.2
5,734,273	+		CA265_RS23440	0.61	-2.8
5,734,305	-		CA265_RS23440	0.62	-3.7
5,734,329	-		CA265_RS23440	0.62	-2.0
5,734,412	+		CA265_RS23440	0.65	-4.0
5,734,420	+		CA265_RS23440	0.65	-2.7
5,734,421	-		CA265_RS23440	0.65	-3.6
5,734,434	-		CA265_RS23440	0.65	-1.9
5,734,502	-		CA265_RS23440	0.67	-4.3
5,734,506	-		CA265_RS23440	0.67	-4.2
5,734,506	-		CA265_RS23440	0.67	-3.2
5,734,507	+		CA265_RS23440	0.67	-4.2
5,734,652	-		CA265_RS23440	0.71	-1.4
5,734,652	-		CA265_RS23440	0.71	-1.9
5,734,672	-		CA265_RS23440	0.72	-5.1
5,734,754	+		CA265_RS23440	0.74	-4.1
5,734,754	+		CA265_RS23440	0.74	-1.8
5,734,755	-		CA265_RS23440	0.74	-3.2
5,734,777	+		CA265_RS23440	0.75	-4.5
5,734,778	-		CA265_RS23440	0.75	-3.8
5,734,778	-		CA265_RS23440	0.75	+0.4
5,734,818	+		CA265_RS23440	0.76	-3.0
5,734,818	+		CA265_RS23440	0.76	-1.4
5,734,819	-		CA265_RS23440	0.76	-1.3
5,734,819	-		CA265_RS23440	0.76	-3.4
5,734,826	-		CA265_RS23440	0.76	-2.0
5,734,842	+		CA265_RS23440	0.76	-1.7
5,734,843	-		CA265_RS23440	0.76	-1.7
5,734,843	-		CA265_RS23440	0.76	-4.1
5,734,960	+		CA265_RS23440	0.79	-0.4
5,734,964	-		CA265_RS23440	0.80	-3.1
5,735,028	-		CA265_RS23440	0.81	-4.6
5,735,028	-		CA265_RS23440	0.81	-2.9
5,735,028	-		CA265_RS23440	0.81	-2.6
5,735,042	+		CA265_RS23440	0.82	-2.6
5,735,061	-		CA265_RS23440	0.82	-2.4
5,735,072	-		CA265_RS23440	0.82	+0.3
5,735,118	-		CA265_RS23440	0.84	-2.4
5,735,118	-		CA265_RS23440	0.84	-3.6
5,735,167	-		CA265_RS23440	0.85	-3.3
5,735,167	-		CA265_RS23440	0.85	-2.9
5,735,173	+		CA265_RS23440	0.85	-1.2
5,735,214	+		CA265_RS23440	0.86	-2.0
5,735,292	+		CA265_RS23440	0.88	-1.2
5,735,434	-				-2.7
5,735,481	-				-2.3
5,735,550	+				-2.0
5,735,652	+				-2.0
5,735,653	-				-4.6
5,735,669	+				-0.9
5,735,669	+				-1.7
5,735,698	+				-2.7
5,735,715	+				+1.2
5,735,812	-				-3.1
5,735,812	-				-0.6
5,735,852	+				+0.4
5,735,855	+				-1.0
5,735,880	-				-0.5
5,735,891	-		CA265_RS23445	0.10	-2.5
5,735,909	+		CA265_RS23445	0.12	-2.9
5,735,910	-		CA265_RS23445	0.12	-2.2
5,735,910	-		CA265_RS23445	0.12	-4.1
5,735,931	+		CA265_RS23445	0.14	-3.1
5,736,051	+		CA265_RS23445	0.27	-2.3
5,736,052	-		CA265_RS23445	0.27	-4.0
5,736,056	-		CA265_RS23445	0.27	+1.4
5,736,180	+		CA265_RS23445	0.40	-2.1
5,736,180	+		CA265_RS23445	0.40	-2.6
5,736,223	+		CA265_RS23445	0.45	-1.2
5,736,229	-		CA265_RS23445	0.46	-3.2
5,736,229	-		CA265_RS23445	0.46	-4.1
5,736,298	-		CA265_RS23445	0.53	-3.5
5,736,313	-		CA265_RS23445	0.54	-2.5
5,736,393	-		CA265_RS23445	0.63	-0.4
5,736,416	+		CA265_RS23445	0.65	-1.3
5,736,496	-		CA265_RS23445	0.74	-3.1
5,736,497	+		CA265_RS23445	0.74	-2.7
5,736,498	-		CA265_RS23445	0.74	-3.4
5,736,519	+		CA265_RS23445	0.76	-3.3
5,736,520	-		CA265_RS23445	0.76	-3.4
5,736,695	-				-2.5